Wall clock time and date at job start Mon Mar 30 2020 03:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99738 * 2 1 4 4 H 1.48499 * 109.47000 * 240.00149 * 3 2 1 5 5 H 1.48496 * 109.46936 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46871 * 120.00376 * 3 2 1 7 7 C 1.37874 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99974 * 173.59816 * 7 2 1 9 9 C 1.50700 * 119.99963 * 353.59447 * 7 2 1 10 10 C 1.52997 * 115.55112 * 85.44763 * 9 7 2 11 11 N 1.46897 * 109.46902 * 65.04875 * 10 9 7 12 12 C 1.46904 * 111.00061 * 185.34943 * 11 10 9 13 13 C 1.52999 * 109.47374 * 179.97438 * 12 11 10 14 14 H 1.09004 * 110.32593 * 57.75267 * 13 12 11 15 15 C 1.54477 * 110.37416 * 180.02562 * 13 12 11 16 16 C 1.54504 * 104.06293 * 142.92388 * 15 13 12 17 17 C 1.54480 * 104.06274 * 0.02562 * 16 15 13 18 18 O 1.44424 * 110.46703 * 295.44065 * 13 12 11 19 19 C 1.52999 * 117.49854 * 231.11887 * 9 7 2 20 20 C 1.53007 * 117.49816 * 299.77723 * 9 7 2 21 21 H 0.96999 * 119.99835 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47286 * 305.05132 * 10 9 7 23 23 H 1.09000 * 109.47292 * 185.05009 * 10 9 7 24 24 H 1.00907 * 111.00220 * 61.39900 * 11 10 9 25 25 H 1.09002 * 109.46542 * 60.00018 * 12 11 10 26 26 H 1.09000 * 109.47306 * 300.00374 * 12 11 10 27 27 H 1.09003 * 110.50695 * 24.27824 * 15 13 12 28 28 H 1.09007 * 110.62744 * 261.62774 * 15 13 12 29 29 H 1.08998 * 110.51463 * 118.64670 * 16 15 13 30 30 H 1.09002 * 110.51242 * 241.35477 * 16 15 13 31 31 H 1.09001 * 110.37656 * 94.85553 * 17 16 15 32 32 H 1.09007 * 110.37211 * 217.19242 * 17 16 15 33 33 H 1.09006 * 117.50175 * 215.00209 * 19 9 7 34 34 H 1.09004 * 117.49978 * 0.02562 * 19 9 7 35 35 H 1.08995 * 117.49889 * 359.97438 * 20 9 7 36 36 H 1.08999 * 117.49328 * 144.99726 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1969 -0.1048 9 6 1.2582 -2.4951 0.1445 10 6 0.7038 -3.0861 -1.1533 11 7 1.8170 -3.4572 -2.0370 12 6 1.3229 -3.9110 -3.3440 13 6 2.5085 -4.2873 -4.2348 14 1 3.1101 -5.0609 -3.7576 15 6 2.0119 -4.7674 -5.6165 16 6 3.0600 -4.2113 -6.6062 17 6 4.0662 -3.4616 -5.7052 18 8 3.3169 -3.1244 -4.5174 19 6 1.7458 -3.4738 1.2147 20 6 0.4401 -2.7018 1.4209 21 1 -0.4850 0.8401 0.0004 22 1 0.0763 -2.3463 -1.6505 23 1 0.1103 -3.9714 -0.9250 24 1 2.4009 -4.1593 -1.6077 25 1 0.7545 -3.1094 -3.8156 26 1 0.6800 -4.7806 -3.2075 27 1 1.0262 -4.3551 -5.8325 28 1 1.9869 -5.8564 -5.6585 29 1 3.5549 -5.0254 -7.1358 30 1 2.5925 -3.5242 -7.3115 31 1 4.9064 -4.1090 -5.4541 32 1 4.4182 -2.5567 -6.2008 33 1 1.6717 -4.5387 0.9941 34 1 2.6062 -3.1764 1.8141 35 1 0.4422 -1.8969 2.1559 36 1 -0.4929 -3.2588 1.3359 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853687.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:51 Heat of formation + Delta-G solvation = -24.690788 kcal Electronic energy + Delta-G solvation = -15767.208487 eV Core-core repulsion = 13251.880086 eV Total energy + Delta-G solvation = -2515.328401 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.20635 -36.89178 -34.26884 -31.92090 -31.72282 -29.71056 -25.96187 -24.99978 -23.02314 -21.55250 -20.94035 -20.75971 -18.85509 -16.36529 -16.17297 -15.42742 -15.40672 -14.51961 -14.17652 -13.83086 -13.51045 -13.36172 -12.98139 -12.40208 -11.70936 -11.67831 -11.52196 -11.17094 -11.02906 -10.81282 -10.79135 -10.58828 -10.53051 -10.35667 -10.07517 -9.49498 -9.32650 -8.70124 -8.26047 -7.96365 -7.39499 -5.84925 -3.85356 3.45190 3.47733 3.52820 4.09466 4.57644 4.62736 4.69967 4.94624 5.05117 5.25626 5.40352 5.45216 5.55513 5.61294 5.65985 5.73031 5.81970 5.92678 5.98229 6.04246 6.24376 6.34961 6.42315 6.57612 6.72050 6.81328 6.96680 7.15119 7.19870 7.55504 7.68198 8.06046 8.08925 8.27973 8.67291 9.13321 9.77244 11.25292 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026078 B = 0.007433 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.434832 B = 3765.904157 C = 4433.209895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.466 4.466 8 H 0.059 0.941 9 C 0.053 3.947 10 C 0.108 3.892 11 N -0.661 5.661 12 C 0.066 3.934 13 C 0.080 3.920 14 H 0.062 0.938 15 C -0.151 4.151 16 C -0.154 4.154 17 C 0.038 3.962 18 O -0.343 6.343 19 C -0.216 4.216 20 C -0.159 4.159 21 H 0.257 0.743 22 H 0.076 0.924 23 H -0.008 1.008 24 H 0.328 0.672 25 H 0.076 0.924 26 H 0.029 0.971 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.396 -9.743 -10.030 14.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.504 4.504 8 H 0.077 0.923 9 C 0.053 3.947 10 C -0.020 4.020 11 N -0.291 5.291 12 C -0.064 4.064 13 C 0.022 3.978 14 H 0.080 0.920 15 C -0.190 4.190 16 C -0.192 4.192 17 C -0.039 4.039 18 O -0.261 6.261 19 C -0.254 4.254 20 C -0.197 4.197 21 H 0.066 0.934 22 H 0.094 0.906 23 H 0.010 0.990 24 H 0.145 0.855 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.338 -8.750 -10.120 13.789 hybrid contribution 0.003 -0.207 0.062 0.216 sum 3.341 -8.957 -10.058 13.877 Atomic orbital electron populations 1.70004 1.05804 1.26140 1.50741 1.24926 0.94752 0.98702 0.95089 0.86722 0.79650 0.83408 0.78577 1.20157 1.21608 1.20524 1.20279 0.92863 0.88378 1.48907 0.92279 1.18819 0.97018 0.93727 0.85177 1.21548 0.90588 0.95716 0.94191 1.60168 1.21714 1.44787 1.02408 1.21986 0.94147 0.98569 0.91660 1.23002 0.92411 0.88123 0.94280 0.92009 1.22982 1.00007 1.00953 0.95032 1.22931 0.97325 1.00263 0.98707 1.23388 0.94348 0.99605 0.86560 1.89401 1.57462 1.35856 1.43414 1.22991 0.98521 0.95379 1.08476 1.22516 0.91892 1.01164 1.04135 0.93380 0.90590 0.99010 0.85548 0.90559 0.95320 0.90548 0.90910 0.91037 0.90864 0.92801 0.89451 0.92275 0.90538 0.90078 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 12.92 55.43 0.72 -25.38 16 2 C 0.07 1.91 5.39 -17.82 -0.10 1.81 16 3 Si 0.89 22.30 29.54 -169.99 -5.02 17.27 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.47 -13.27 8.74 -34.44 -0.30 -13.57 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.05 1.35 1.55 -155.66 -0.24 1.11 16 10 C 0.11 2.51 5.51 -3.83 -0.02 2.49 16 11 N -0.66 -13.74 6.34 -113.78 -0.72 -14.46 16 12 C 0.07 1.13 5.29 -3.82 -0.02 1.11 16 13 C 0.08 1.19 3.47 -25.96 -0.09 1.10 16 14 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 15 C -0.15 -1.72 6.63 -25.17 -0.17 -1.89 16 16 C -0.15 -1.60 7.09 -25.17 -0.18 -1.78 16 17 C 0.04 0.48 7.63 37.93 0.29 0.77 16 18 O -0.34 -6.02 11.31 -35.23 -0.40 -6.42 16 19 C -0.22 -4.85 9.96 -26.69 -0.27 -5.12 16 20 C -0.16 -3.85 9.41 -26.69 -0.25 -4.11 16 21 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 22 H 0.08 1.98 8.13 -51.93 -0.42 1.55 16 23 H -0.01 -0.18 8.09 -51.93 -0.42 -0.60 16 24 H 0.33 6.34 8.79 -39.29 -0.35 6.00 16 25 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.87 7.87 -51.93 -0.41 0.46 16 28 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.01 8.14 -51.92 -0.42 0.58 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 35 H 0.08 2.09 8.14 -51.93 -0.42 1.67 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 298.82 15.07 4.50 4.50 Total: -1.00 -30.72 298.82 -8.48 -39.20 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.21 Total: 3.35 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -1.34 Total: -18.08 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: -0.01 Total: -39.84 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.40 Total: -6.42 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.72 -8.48 -39.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853687.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.508 kcal (2) G-P(sol) polarization free energy of solvation -30.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds