Wall clock time and date at job start Mon Mar 30 2020 03:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99738 * 2 1 4 4 H 1.48499 * 109.47000 * 240.00149 * 3 2 1 5 5 H 1.48496 * 109.46936 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46871 * 120.00376 * 3 2 1 7 7 C 1.37874 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99974 * 173.59816 * 7 2 1 9 9 C 1.50700 * 119.99963 * 353.59447 * 7 2 1 10 10 C 1.52997 * 115.55112 * 85.44763 * 9 7 2 11 11 N 1.46897 * 109.46902 * 65.04875 * 10 9 7 12 12 C 1.46904 * 111.00061 * 185.34943 * 11 10 9 13 13 C 1.52999 * 109.47374 * 179.97438 * 12 11 10 14 14 H 1.09004 * 110.32593 * 57.75267 * 13 12 11 15 15 C 1.54477 * 110.37416 * 180.02562 * 13 12 11 16 16 C 1.54504 * 104.06293 * 142.92388 * 15 13 12 17 17 C 1.54480 * 104.06274 * 0.02562 * 16 15 13 18 18 O 1.44424 * 110.46703 * 295.44065 * 13 12 11 19 19 C 1.52999 * 117.49854 * 231.11887 * 9 7 2 20 20 C 1.53007 * 117.49816 * 299.77723 * 9 7 2 21 21 H 0.96999 * 119.99835 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47286 * 305.05132 * 10 9 7 23 23 H 1.09000 * 109.47292 * 185.05009 * 10 9 7 24 24 H 1.00907 * 111.00220 * 61.39900 * 11 10 9 25 25 H 1.09002 * 109.46542 * 60.00018 * 12 11 10 26 26 H 1.09000 * 109.47306 * 300.00374 * 12 11 10 27 27 H 1.09003 * 110.50695 * 24.27824 * 15 13 12 28 28 H 1.09007 * 110.62744 * 261.62774 * 15 13 12 29 29 H 1.08998 * 110.51463 * 118.64670 * 16 15 13 30 30 H 1.09002 * 110.51242 * 241.35477 * 16 15 13 31 31 H 1.09001 * 110.37656 * 94.85553 * 17 16 15 32 32 H 1.09007 * 110.37211 * 217.19242 * 17 16 15 33 33 H 1.09006 * 117.50175 * 215.00209 * 19 9 7 34 34 H 1.09004 * 117.49978 * 0.02562 * 19 9 7 35 35 H 1.08995 * 117.49889 * 359.97438 * 20 9 7 36 36 H 1.08999 * 117.49328 * 144.99726 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1969 -0.1048 9 6 1.2582 -2.4951 0.1445 10 6 0.7038 -3.0861 -1.1533 11 7 1.8170 -3.4572 -2.0370 12 6 1.3229 -3.9110 -3.3440 13 6 2.5085 -4.2873 -4.2348 14 1 3.1101 -5.0609 -3.7576 15 6 2.0119 -4.7674 -5.6165 16 6 3.0600 -4.2113 -6.6062 17 6 4.0662 -3.4616 -5.7052 18 8 3.3169 -3.1244 -4.5174 19 6 1.7458 -3.4738 1.2147 20 6 0.4401 -2.7018 1.4209 21 1 -0.4850 0.8401 0.0004 22 1 0.0763 -2.3463 -1.6505 23 1 0.1103 -3.9714 -0.9250 24 1 2.4009 -4.1593 -1.6077 25 1 0.7545 -3.1094 -3.8156 26 1 0.6800 -4.7806 -3.2075 27 1 1.0262 -4.3551 -5.8325 28 1 1.9869 -5.8564 -5.6585 29 1 3.5549 -5.0254 -7.1358 30 1 2.5925 -3.5242 -7.3115 31 1 4.9064 -4.1090 -5.4541 32 1 4.4182 -2.5567 -6.2008 33 1 1.6717 -4.5387 0.9941 34 1 2.6062 -3.1764 1.8141 35 1 0.4422 -1.8969 2.1559 36 1 -0.4929 -3.2588 1.3359 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853687.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:51 Heat of formation + Delta-G solvation = -45.235756 kcal Electronic energy + Delta-G solvation = -15768.099384 eV Core-core repulsion = 13251.880086 eV Total energy + Delta-G solvation = -2516.219298 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.30376 -38.73095 -35.85852 -33.88798 -32.93139 -30.95839 -27.77151 -26.74648 -24.49041 -22.93833 -22.49970 -21.87020 -20.82013 -18.12603 -17.30224 -17.00317 -16.51109 -16.47915 -15.78846 -15.32314 -15.06875 -14.76085 -14.48281 -13.92553 -13.35713 -13.07768 -12.90852 -12.82709 -12.59966 -12.52515 -12.37612 -12.08841 -11.99952 -11.91974 -11.46924 -11.24883 -10.73441 -10.60848 -10.35540 -9.90217 -8.99189 -8.03160 -6.08639 1.41854 1.44280 1.50798 2.48571 3.03868 3.26200 3.30185 3.64731 3.76317 3.95870 4.07264 4.21260 4.33470 4.42812 4.51773 4.57840 4.63969 4.71126 4.74518 4.79905 4.89512 4.97424 4.99380 5.00094 5.08502 5.17367 5.24408 5.29129 5.65369 5.76204 5.88870 6.08770 6.37914 6.53753 6.78707 6.94192 7.56102 9.05976 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026078 B = 0.007433 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.434832 B = 3765.904157 C = 4433.209895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.020 3.980 3 Si 0.944 3.056 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.480 4.480 8 H 0.044 0.956 9 C 0.021 3.979 10 C 0.124 3.876 11 N -0.679 5.679 12 C 0.067 3.933 13 C 0.078 3.922 14 H 0.073 0.927 15 C -0.146 4.146 16 C -0.147 4.147 17 C 0.029 3.971 18 O -0.392 6.392 19 C -0.187 4.187 20 C -0.164 4.164 21 H 0.256 0.744 22 H 0.037 0.963 23 H 0.010 0.990 24 H 0.337 0.663 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.104 -11.335 -10.919 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.770 3.230 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.021 3.979 10 C -0.005 4.005 11 N -0.310 5.310 12 C -0.062 4.062 13 C 0.020 3.980 14 H 0.091 0.909 15 C -0.184 4.184 16 C -0.185 4.185 17 C -0.047 4.047 18 O -0.312 6.312 19 C -0.224 4.224 20 C -0.203 4.203 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.028 0.972 24 H 0.155 0.845 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.059 -10.355 -11.013 15.652 hybrid contribution -0.180 0.267 0.328 0.459 sum 3.879 -10.088 -10.685 15.198 Atomic orbital electron populations 1.70102 1.06823 1.26636 1.51701 1.25580 0.95548 1.01592 0.95110 0.85846 0.78577 0.80087 0.78478 1.20489 1.21001 1.19711 1.20515 0.92410 0.90304 1.48615 0.93802 1.18938 0.98341 0.93981 0.86664 1.21174 0.90879 0.95206 0.93224 1.60039 1.21423 1.46116 1.03411 1.22034 0.95551 0.98546 0.90090 1.23087 0.91483 0.87660 0.95756 0.90912 1.22972 0.99929 1.02544 0.92955 1.22920 0.96504 1.00885 0.98147 1.23628 0.94969 1.00494 0.85656 1.89344 1.58581 1.37657 1.45570 1.22977 0.97131 0.96499 1.05774 1.22435 0.93480 1.01281 1.03060 0.93521 0.94431 0.97180 0.84539 0.92892 0.92883 0.90901 0.88238 0.88249 0.90619 0.91497 0.89163 0.89031 0.90688 0.92479 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.64 12.92 21.45 0.28 -54.36 16 2 C 0.02 1.18 5.39 84.65 0.46 1.64 16 3 Si 0.94 46.39 29.54 68.60 2.03 48.42 16 4 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 5 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.48 -27.72 8.74 25.60 0.22 -27.50 16 8 H 0.04 2.59 7.82 -2.91 -0.02 2.57 16 9 C 0.02 1.09 1.55 -52.93 -0.08 1.00 16 10 C 0.12 5.77 5.51 86.30 0.48 6.24 16 11 N -0.68 -27.94 6.34 -513.88 -3.26 -31.20 16 12 C 0.07 2.24 5.29 86.30 0.46 2.70 16 13 C 0.08 2.19 3.47 31.10 0.11 2.30 16 14 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 15 C -0.15 -2.93 6.63 31.61 0.21 -2.72 16 16 C -0.15 -2.64 7.09 31.61 0.22 -2.42 16 17 C 0.03 0.69 7.63 72.49 0.55 1.24 16 18 O -0.39 -13.58 11.31 -148.98 -1.69 -15.26 16 19 C -0.19 -8.05 9.96 30.62 0.30 -7.75 16 20 C -0.16 -7.91 9.41 30.62 0.29 -7.62 16 21 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 22 H 0.04 2.00 8.13 -2.39 -0.02 1.98 16 23 H 0.01 0.43 8.09 -2.39 -0.02 0.41 16 24 H 0.34 12.60 8.79 -89.69 -0.79 11.81 16 25 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 1.51 7.87 -2.39 -0.02 1.50 16 28 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.09 3.35 8.14 -2.38 -0.02 3.34 16 34 H 0.07 3.24 8.14 -2.38 -0.02 3.22 16 35 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -66.70 298.82 0.83 -65.87 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.25 Total: 19.43 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 3.22 Total: -32.89 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -2.98 Total: -85.56 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -1.69 Total: -15.26 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -66.70 0.83 -65.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853687.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.638 kcal (2) G-P(sol) polarization free energy of solvation -66.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds