Wall clock time and date at job start Mon Mar 30 2020 02:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99839 * 2 1 4 4 H 1.48497 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47395 * 299.99950 * 3 2 1 6 6 H 1.48508 * 109.47283 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00176 * 163.08478 * 7 2 1 9 9 N 1.36937 * 120.00340 * 343.07630 * 7 2 1 10 10 C 1.46922 * 120.66287 * 151.85901 * 9 7 2 11 11 C 1.53164 * 108.76505 * 126.32358 * 10 9 7 12 12 C 1.53107 * 109.35953 * 54.78221 * 11 10 9 13 13 O 1.42900 * 109.56155 * 58.90078 * 12 11 10 14 14 C 1.53111 * 109.19901 * 179.23455 * 12 11 10 15 15 C 1.53017 * 109.34672 * 59.22945 * 14 12 11 16 16 C 1.52983 * 109.53248 * 60.09342 * 15 14 12 17 17 C 1.53014 * 109.53932 * 300.21689 * 16 15 14 18 18 C 1.52976 * 109.40359 * 59.83894 * 17 16 15 19 19 H 1.09002 * 109.49215 * 59.65844 * 18 17 16 20 20 C 1.46921 * 120.65753 * 331.88498 * 9 7 2 21 21 H 0.97000 * 120.00533 * 0.02562 * 1 2 3 22 22 H 1.09008 * 109.59289 * 246.10342 * 10 9 7 23 23 H 1.08995 * 109.58961 * 6.54042 * 10 9 7 24 24 H 1.09000 * 109.49024 * 174.74961 * 11 10 9 25 25 H 1.09003 * 109.48707 * 294.81753 * 11 10 9 26 26 H 0.96701 * 114.00131 * 59.87451 * 13 12 11 27 27 H 1.09001 * 109.49460 * 179.19339 * 14 12 11 28 28 H 1.09000 * 109.49428 * 299.24495 * 14 12 11 29 29 H 1.08999 * 109.45987 * 180.10950 * 15 14 12 30 30 H 1.08996 * 109.46127 * 300.07698 * 15 14 12 31 31 H 1.09002 * 109.45993 * 60.24249 * 16 15 14 32 32 H 1.09004 * 109.45963 * 180.21342 * 16 15 14 33 33 H 1.08989 * 109.48488 * 299.85686 * 17 16 15 34 34 H 1.09004 * 109.48272 * 179.81517 * 17 16 15 35 35 H 1.09007 * 109.57920 * 353.33068 * 20 9 7 36 36 H 1.09006 * 109.57575 * 113.71320 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0552 -1.2222 -0.2727 9 7 1.3701 -2.3625 0.3441 10 6 1.8138 -3.6531 -0.2000 11 6 2.0686 -4.6167 0.9629 12 6 0.8128 -4.7039 1.8343 13 8 -0.2876 -5.1581 1.0438 14 6 1.0650 -5.6825 2.9846 15 6 2.2541 -5.1937 3.8144 16 6 1.9452 -3.8079 4.3839 17 6 1.6839 -2.8297 3.2366 18 6 0.4943 -3.3218 2.4103 19 1 -0.3882 -3.3879 3.0467 20 6 0.2255 -2.3416 1.2651 21 1 -0.4851 0.8400 -0.0004 22 1 1.0397 -4.0614 -0.8499 23 1 2.7340 -3.5136 -0.7673 24 1 2.3083 -5.6050 0.5705 25 1 2.9025 -4.2510 1.5622 26 1 -0.1536 -6.0297 0.6471 27 1 0.1785 -5.7374 3.6165 28 1 1.2850 -6.6704 2.5800 29 1 2.4365 -5.8902 4.6328 30 1 3.1397 -5.1371 3.1817 31 1 1.0622 -3.8653 5.0204 32 1 2.7944 -3.4593 4.9717 33 1 2.5676 -2.7697 2.6016 34 1 1.4607 -1.8434 3.6435 35 1 0.0984 -1.3364 1.6670 36 1 -0.6773 -2.6409 0.7325 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088022526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:14 Heat of formation + Delta-G solvation = -44.774499 kcal Electronic energy + Delta-G solvation = -17143.693485 eV Core-core repulsion = 14627.494189 eV Total energy + Delta-G solvation = -2516.199296 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.77604 -35.17014 -35.10548 -31.82629 -31.05270 -29.28032 -28.29446 -25.10875 -23.03119 -21.70922 -21.60167 -20.20161 -17.91170 -16.79053 -15.68008 -15.00629 -14.90617 -14.43606 -13.96262 -13.64612 -13.01903 -12.88425 -12.62749 -12.49371 -11.90801 -11.62901 -11.36157 -11.07331 -10.94108 -10.78302 -10.64462 -10.52375 -10.29359 -10.06988 -9.84886 -9.74067 -9.56688 -9.15175 -8.94752 -8.36762 -6.53317 -5.69820 -3.11848 3.40582 3.48482 3.50444 4.55347 4.67872 5.05210 5.11535 5.34426 5.46539 5.55272 5.58007 5.62597 5.73519 5.90425 5.94671 5.96024 6.13780 6.22652 6.25083 6.34870 6.43210 6.52480 6.57150 6.68830 6.80123 6.88667 6.94587 7.10233 7.20476 7.51061 7.82826 7.87554 8.22993 8.54181 9.30915 9.95091 10.53738 11.38188 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.036445 B = 0.009957 C = 0.009111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.100075 B = 2811.546165 C = 3072.481566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.001 3.999 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.248 4.248 8 H 0.064 0.936 9 N -0.588 5.588 10 C 0.150 3.850 11 C -0.161 4.161 12 C 0.145 3.855 13 O -0.552 6.552 14 C -0.143 4.143 15 C -0.115 4.115 16 C -0.122 4.122 17 C -0.103 4.103 18 C -0.093 4.093 19 H 0.057 0.943 20 C 0.182 3.818 21 H 0.252 0.748 22 H 0.021 0.979 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.362 0.638 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.199 -10.140 6.482 12.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.378 4.378 8 H 0.081 0.919 9 N -0.311 5.311 10 C 0.023 3.977 11 C -0.201 4.201 12 C 0.104 3.896 13 O -0.356 6.356 14 C -0.181 4.181 15 C -0.152 4.152 16 C -0.159 4.159 17 C -0.141 4.141 18 C -0.113 4.113 19 H 0.075 0.925 20 C 0.056 3.944 21 H 0.062 0.938 22 H 0.039 0.961 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.207 0.793 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.853 -9.395 6.650 11.859 hybrid contribution 0.621 0.240 -0.134 0.679 sum 3.474 -9.155 6.516 11.762 Atomic orbital electron populations 1.70057 1.05198 1.25163 1.54133 1.25027 0.95221 0.98247 1.01199 0.86291 0.79363 0.84321 0.77225 1.20333 1.21837 1.21650 1.19196 0.92397 0.84849 1.41354 0.91872 1.43989 1.35796 1.01284 1.49994 1.20783 0.97248 0.87077 0.92580 1.22779 0.98181 0.99295 0.99807 1.21104 0.85960 0.93834 0.88679 1.86642 1.42195 1.38036 1.68689 1.22283 0.98775 0.98543 0.98459 1.21508 0.98177 0.96761 0.98784 1.21620 1.00639 0.95338 0.98351 1.21493 0.99480 0.97445 0.95673 1.21669 0.97198 0.93908 0.98568 0.92466 1.20708 0.88890 0.97194 0.87593 0.93802 0.96138 0.93331 0.93479 0.90900 0.79308 0.91936 0.92727 0.92831 0.91693 0.92680 0.92622 0.90469 0.92141 0.89801 0.95735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 11.20 55.49 0.62 -26.14 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.25 -6.88 9.59 -15.06 -0.14 -7.02 16 8 H 0.06 1.72 7.89 -52.48 -0.41 1.31 16 9 N -0.59 -14.99 2.45 -172.38 -0.42 -15.41 16 10 C 0.15 3.25 6.28 -3.73 -0.02 3.23 16 11 C -0.16 -2.84 4.34 -26.59 -0.12 -2.95 16 12 C 0.14 2.52 0.74 -90.47 -0.07 2.45 16 13 O -0.55 -9.92 11.78 -35.23 -0.42 -10.34 16 14 C -0.14 -2.03 5.10 -26.67 -0.14 -2.16 16 15 C -0.11 -1.54 5.64 -26.73 -0.15 -1.69 16 16 C -0.12 -1.78 5.92 -26.73 -0.16 -1.94 16 17 C -0.10 -1.89 4.82 -26.74 -0.13 -2.02 16 18 C -0.09 -1.86 2.20 -90.53 -0.20 -2.06 16 19 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 20 C 0.18 4.54 4.46 -3.75 -0.02 4.52 16 21 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 22 H 0.02 0.47 7.82 -51.92 -0.41 0.06 16 23 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.30 4.72 -51.93 -0.24 1.05 16 26 H 0.36 4.87 9.05 45.56 0.41 5.28 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.88 6.39 -51.93 -0.33 0.55 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.55 5.97 -51.94 -0.31 1.24 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 2.32 6.06 -51.92 -0.31 2.00 16 36 H 0.02 0.68 7.84 -51.93 -0.41 0.27 16 LS Contribution 267.47 15.07 4.03 4.03 Total: -1.00 -30.38 267.47 -7.39 -37.77 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.94 Total: 2.86 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -1.23 Total: -9.69 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.20 Total: -41.55 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.42 Total: -10.34 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.38 -7.39 -37.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088022526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.004 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds