Wall clock time and date at job start Mon Mar 30 2020 02:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99839 * 2 1 4 4 H 1.48497 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47395 * 299.99950 * 3 2 1 6 6 H 1.48508 * 109.47283 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00176 * 163.08478 * 7 2 1 9 9 N 1.36937 * 120.00340 * 343.07630 * 7 2 1 10 10 C 1.46922 * 120.66287 * 151.85901 * 9 7 2 11 11 C 1.53164 * 108.76505 * 126.32358 * 10 9 7 12 12 C 1.53107 * 109.35953 * 54.78221 * 11 10 9 13 13 O 1.42900 * 109.56155 * 58.90078 * 12 11 10 14 14 C 1.53111 * 109.19901 * 179.23455 * 12 11 10 15 15 C 1.53017 * 109.34672 * 59.22945 * 14 12 11 16 16 C 1.52983 * 109.53248 * 60.09342 * 15 14 12 17 17 C 1.53014 * 109.53932 * 300.21689 * 16 15 14 18 18 C 1.52976 * 109.40359 * 59.83894 * 17 16 15 19 19 H 1.09002 * 109.49215 * 59.65844 * 18 17 16 20 20 C 1.46921 * 120.65753 * 331.88498 * 9 7 2 21 21 H 0.97000 * 120.00533 * 0.02562 * 1 2 3 22 22 H 1.09008 * 109.59289 * 246.10342 * 10 9 7 23 23 H 1.08995 * 109.58961 * 6.54042 * 10 9 7 24 24 H 1.09000 * 109.49024 * 174.74961 * 11 10 9 25 25 H 1.09003 * 109.48707 * 294.81753 * 11 10 9 26 26 H 0.96701 * 114.00131 * 59.87451 * 13 12 11 27 27 H 1.09001 * 109.49460 * 179.19339 * 14 12 11 28 28 H 1.09000 * 109.49428 * 299.24495 * 14 12 11 29 29 H 1.08999 * 109.45987 * 180.10950 * 15 14 12 30 30 H 1.08996 * 109.46127 * 300.07698 * 15 14 12 31 31 H 1.09002 * 109.45993 * 60.24249 * 16 15 14 32 32 H 1.09004 * 109.45963 * 180.21342 * 16 15 14 33 33 H 1.08989 * 109.48488 * 299.85686 * 17 16 15 34 34 H 1.09004 * 109.48272 * 179.81517 * 17 16 15 35 35 H 1.09007 * 109.57920 * 353.33068 * 20 9 7 36 36 H 1.09006 * 109.57575 * 113.71320 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0552 -1.2222 -0.2727 9 7 1.3701 -2.3625 0.3441 10 6 1.8138 -3.6531 -0.2000 11 6 2.0686 -4.6167 0.9629 12 6 0.8128 -4.7039 1.8343 13 8 -0.2876 -5.1581 1.0438 14 6 1.0650 -5.6825 2.9846 15 6 2.2541 -5.1937 3.8144 16 6 1.9452 -3.8079 4.3839 17 6 1.6839 -2.8297 3.2366 18 6 0.4943 -3.3218 2.4103 19 1 -0.3882 -3.3879 3.0467 20 6 0.2255 -2.3416 1.2651 21 1 -0.4851 0.8400 -0.0004 22 1 1.0397 -4.0614 -0.8499 23 1 2.7340 -3.5136 -0.7673 24 1 2.3083 -5.6050 0.5705 25 1 2.9025 -4.2510 1.5622 26 1 -0.1536 -6.0297 0.6471 27 1 0.1785 -5.7374 3.6165 28 1 1.2850 -6.6704 2.5800 29 1 2.4365 -5.8902 4.6328 30 1 3.1397 -5.1371 3.1817 31 1 1.0622 -3.8653 5.0204 32 1 2.7944 -3.4593 4.9717 33 1 2.5676 -2.7697 2.6016 34 1 1.4607 -1.8434 3.6435 35 1 0.0984 -1.3364 1.6670 36 1 -0.6773 -2.6409 0.7325 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088022526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:13 Heat of formation + Delta-G solvation = -65.287018 kcal Electronic energy + Delta-G solvation = -17144.582975 eV Core-core repulsion = 14627.494189 eV Total energy + Delta-G solvation = -2517.088786 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.23144 -36.98101 -36.43798 -33.77052 -32.57148 -30.90761 -29.81126 -27.01574 -24.68181 -23.29116 -23.06995 -21.68097 -19.53455 -18.59750 -17.15383 -16.88471 -16.38208 -15.99750 -15.58134 -15.22550 -14.66852 -14.51926 -14.12173 -13.86230 -13.42341 -13.20650 -13.01098 -12.85291 -12.63328 -12.45807 -12.21543 -12.09676 -11.90589 -11.67808 -11.59614 -11.23667 -11.16847 -10.69757 -10.49694 -10.36734 -8.61735 -7.84352 -5.30163 1.44489 1.45859 1.56799 2.51441 3.27660 3.40525 3.71493 3.85262 3.91718 4.05337 4.26497 4.34411 4.38864 4.52544 4.64914 4.68410 4.76425 4.83070 4.94218 5.01732 5.08355 5.13709 5.22005 5.26312 5.36727 5.39048 5.39733 5.49570 5.54841 5.65139 5.70552 5.84404 6.40823 7.08097 7.16885 7.89651 8.43525 9.21752 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.036445 B = 0.009957 C = 0.009111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.100075 B = 2811.546165 C = 3072.481566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.603 5.603 10 C 0.143 3.857 11 C -0.149 4.149 12 C 0.145 3.855 13 O -0.576 6.576 14 C -0.133 4.133 15 C -0.112 4.112 16 C -0.116 4.116 17 C -0.097 4.097 18 C -0.091 4.091 19 H 0.054 0.946 20 C 0.195 3.805 21 H 0.248 0.752 22 H 0.007 0.993 23 H 0.050 0.950 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.382 0.618 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.039 0.961 35 H 0.046 0.954 36 H -0.018 1.018 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.004 -12.159 7.763 15.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.249 4.249 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.326 5.326 10 C 0.018 3.982 11 C -0.188 4.188 12 C 0.104 3.896 13 O -0.383 6.383 14 C -0.171 4.171 15 C -0.150 4.150 16 C -0.153 4.153 17 C -0.135 4.135 18 C -0.111 4.111 19 H 0.072 0.928 20 C 0.069 3.931 21 H 0.057 0.943 22 H 0.025 0.975 23 H 0.068 0.932 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.231 0.769 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.000 1.000 Dipole moment (debyes) X Y Z Total from point charges 4.683 -11.460 7.928 14.700 hybrid contribution 0.014 0.851 -0.613 1.048 sum 4.697 -10.609 7.315 13.716 Atomic orbital electron populations 1.70233 1.06852 1.25550 1.55857 1.25816 0.95948 1.01560 1.01598 0.85242 0.78778 0.79990 0.76691 1.18766 1.22079 1.21769 1.19538 0.92690 0.85964 1.40351 0.91530 1.44208 1.35589 1.02226 1.50551 1.20958 0.96605 0.86337 0.94343 1.22645 0.98342 0.99770 0.98010 1.21070 0.85481 0.93084 0.89936 1.86606 1.42666 1.39809 1.69231 1.22185 0.99305 0.98650 0.96931 1.21529 0.97643 0.96168 0.99631 1.21576 1.01730 0.95214 0.96789 1.21385 0.97628 0.97829 0.96622 1.21542 0.98035 0.94719 0.96773 0.92773 1.20378 0.87458 0.96538 0.88762 0.94329 0.97459 0.93165 0.89725 0.90622 0.76917 0.91852 0.89816 0.89767 0.91526 0.91970 0.90913 0.92193 0.94177 0.93526 0.99978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.30 11.20 21.65 0.24 -58.06 16 2 C -0.05 -3.15 4.92 84.86 0.42 -2.73 16 3 Si 0.96 46.16 29.59 68.60 2.03 48.19 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.26 -14.44 9.59 84.03 0.81 -13.64 16 8 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 9 N -0.60 -31.53 2.45 -699.30 -1.71 -33.24 16 10 C 0.14 6.17 6.28 86.35 0.54 6.71 16 11 C -0.15 -4.86 4.34 30.68 0.13 -4.73 16 12 C 0.14 4.74 0.74 -10.69 -0.01 4.73 16 13 O -0.58 -19.96 11.78 -148.98 -1.76 -21.72 16 14 C -0.13 -3.20 5.10 30.64 0.16 -3.05 16 15 C -0.11 -2.48 5.64 30.59 0.17 -2.31 16 16 C -0.12 -3.02 5.92 30.59 0.18 -2.83 16 17 C -0.10 -3.50 4.82 30.59 0.15 -3.35 16 18 C -0.09 -3.64 2.20 -10.74 -0.02 -3.66 16 19 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 20 C 0.19 10.18 4.46 86.34 0.39 10.56 16 21 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 22 H 0.01 0.34 7.82 -2.38 -0.02 0.32 16 23 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 24 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.08 2.48 4.72 -2.39 -0.01 2.46 16 26 H 0.38 9.31 9.05 -74.06 -0.67 8.64 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.49 6.39 -2.39 -0.02 1.47 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.06 2.36 5.97 -2.39 -0.01 2.35 16 34 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.05 2.74 6.06 -2.38 -0.01 2.73 16 36 H -0.02 -1.06 7.84 -2.38 -0.02 -1.08 16 Total: -1.00 -68.61 267.47 2.10 -66.51 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.39 Total: 12.60 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 2.91 Total: -14.28 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -1.47 Total: -91.30 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -1.76 Total: -21.72 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -68.61 2.10 -66.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088022526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.220 kcal (2) G-P(sol) polarization free energy of solvation -68.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds