Wall clock time and date at job start Mon Mar 30 2020 02:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00020 * 2 1 4 4 H 1.48501 * 109.47283 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46926 * 300.00312 * 3 2 1 6 6 H 1.48504 * 109.47052 * 60.00044 * 3 2 1 7 7 C 1.37879 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99922 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99804 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47048 * 179.97438 * 9 7 2 11 11 C 1.46021 * 120.12179 * 270.02321 * 10 9 7 12 12 C 1.53927 * 110.55308 * 277.06735 * 11 10 9 13 13 C 1.54715 * 107.32007 * 258.40416 * 12 11 10 14 14 C 1.52800 * 108.41000 * 109.73233 * 13 12 11 15 15 C 1.51051 * 113.51513 * 297.24544 * 14 13 12 16 16 C 1.52954 * 111.83103 * 292.71854 * 15 14 13 17 17 C 1.53627 * 108.19120 * 92.05289 * 16 15 14 18 18 C 1.34468 * 120.11760 * 90.00123 * 10 9 7 19 19 O 1.21283 * 120.64435 * 355.16588 * 18 10 9 20 20 H 0.97003 * 120.00198 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47068 * 59.99888 * 9 7 2 22 22 H 1.08995 * 109.46800 * 300.00277 * 9 7 2 23 23 H 1.09006 * 109.25778 * 37.34050 * 11 10 9 24 24 H 1.08994 * 109.26289 * 156.82230 * 11 10 9 25 25 H 1.08997 * 109.88559 * 17.85453 * 12 11 10 26 26 H 1.08998 * 109.89152 * 138.87842 * 12 11 10 27 27 H 1.08993 * 109.67883 * 229.46649 * 13 12 11 28 28 H 1.09005 * 109.67317 * 350.00542 * 13 12 11 29 29 H 1.08998 * 108.67441 * 58.28751 * 14 13 12 30 30 H 1.09000 * 108.67203 * 176.20249 * 14 13 12 31 31 H 1.09006 * 109.00797 * 172.12135 * 15 14 13 32 32 H 1.09000 * 109.01443 * 53.32769 * 15 14 13 33 33 H 1.09005 * 109.71452 * 332.38362 * 16 15 14 34 34 H 1.09000 * 109.72119 * 211.72963 * 16 15 14 35 35 H 1.09000 * 109.74973 * 163.12462 * 17 16 15 36 36 H 1.08997 * 109.75841 * 283.82287 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.6787 -4.1687 -1.2654 12 6 1.6678 -5.1874 -1.8221 13 6 2.2138 -6.5994 -1.5033 14 6 1.3268 -7.2289 -0.4301 15 6 1.3403 -6.4772 0.8800 16 6 2.7043 -6.5572 1.5677 17 6 3.5366 -5.3443 1.1247 18 6 2.6424 -4.1260 1.1608 19 8 2.3272 -3.6215 2.2177 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5570 0.8896 23 1 2.8101 -3.3618 -1.9865 24 1 3.6355 -4.6646 -1.1026 25 1 0.6988 -5.0477 -1.3431 26 1 1.5698 -5.0613 -2.9003 27 1 2.1923 -7.2132 -2.4037 28 1 3.2370 -6.5228 -1.1352 29 1 0.3025 -7.2652 -0.8011 30 1 1.6665 -8.2489 -0.2508 31 1 0.5843 -6.9017 1.5407 32 1 1.0985 -5.4312 0.6918 33 1 3.2103 -7.4772 1.2748 34 1 2.5725 -6.5376 2.6495 35 1 4.3763 -5.2053 1.8057 36 1 3.9061 -5.5012 0.1114 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196307458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:29 Heat of formation + Delta-G solvation = -44.785295 kcal Electronic energy + Delta-G solvation = -16617.995144 eV Core-core repulsion = 14101.795380 eV Total energy + Delta-G solvation = -2516.199764 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.83067 -36.50110 -34.99793 -32.70233 -32.31007 -29.81350 -26.94811 -26.37366 -23.61403 -22.54838 -21.75090 -19.68678 -17.91530 -16.68590 -16.41160 -15.71851 -15.00988 -14.61539 -14.23364 -14.08988 -13.66075 -12.85348 -12.76324 -12.35522 -12.22582 -11.68617 -11.60703 -11.43579 -11.22507 -10.95057 -10.92538 -10.72227 -10.52637 -10.41471 -10.13293 -10.06986 -9.94109 -9.54680 -8.70579 -8.40995 -7.58086 -6.01406 -4.05557 3.31453 3.38780 3.42747 3.52969 4.06241 4.47960 4.82600 4.94842 5.02277 5.09306 5.28452 5.32834 5.45208 5.52744 5.60543 5.65482 5.69918 5.92109 5.98441 6.11368 6.12524 6.17387 6.25975 6.31477 6.39084 6.42893 6.57031 6.69319 7.12969 7.46758 7.61073 7.95637 8.27602 8.50951 8.94881 9.18976 9.59588 11.06637 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038733 B = 0.008074 C = 0.007528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.728785 B = 3466.915372 C = 3718.401575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.245 3.755 10 N -0.596 5.596 11 C 0.105 3.895 12 C -0.143 4.143 13 C -0.123 4.123 14 C -0.112 4.112 15 C -0.140 4.140 16 C -0.102 4.102 17 C -0.157 4.157 18 C 0.512 3.488 19 O -0.546 6.546 20 H 0.262 0.738 21 H 0.031 0.969 22 H 0.040 0.960 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.907 -14.060 -3.916 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.075 0.925 9 C 0.126 3.874 10 N -0.328 5.328 11 C -0.019 4.019 12 C -0.181 4.181 13 C -0.161 4.161 14 C -0.150 4.150 15 C -0.178 4.178 16 C -0.140 4.140 17 C -0.197 4.197 18 C 0.299 3.701 19 O -0.425 6.425 20 H 0.072 0.928 21 H 0.049 0.951 22 H 0.058 0.942 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.563 -13.643 -3.365 14.774 hybrid contribution 0.407 0.989 -0.101 1.074 sum 4.970 -12.654 -3.467 14.030 Atomic orbital electron populations 1.69942 1.05968 1.26809 1.50769 1.24942 0.94884 0.99213 0.95178 0.86452 0.80020 0.83459 0.77541 1.19833 1.21009 1.20902 1.21481 0.93387 0.90722 1.50571 0.92455 1.19242 0.87577 0.82486 0.98138 1.48172 1.45506 1.34674 1.04401 1.21865 0.96150 0.96806 0.87115 1.22689 1.00367 0.94319 1.00766 1.22141 0.99520 0.96372 0.98021 1.21156 0.99888 0.98679 0.95238 1.21517 0.97114 1.03046 0.96075 1.21494 0.95543 0.96389 1.00560 1.22381 0.99149 0.94680 1.03531 1.20269 0.81297 0.84313 0.84175 1.90675 1.59101 1.62319 1.30359 0.92843 0.95055 0.94196 0.90621 0.90840 0.90600 0.91428 0.92211 0.91480 0.92504 0.92964 0.92377 0.89993 0.91474 0.91447 0.89733 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.52 -15.09 9.39 -34.44 -0.32 -15.41 16 8 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 9 C 0.24 6.47 5.17 -5.19 -0.03 6.44 16 10 N -0.60 -12.66 1.69 -174.76 -0.29 -12.96 16 11 C 0.10 1.71 5.54 -3.82 -0.02 1.68 16 12 C -0.14 -1.96 5.70 -25.35 -0.14 -2.10 16 13 C -0.12 -1.38 5.62 -25.93 -0.15 -1.52 16 14 C -0.11 -1.31 4.90 -27.81 -0.14 -1.44 16 15 C -0.14 -1.99 5.24 -27.73 -0.15 -2.14 16 16 C -0.10 -1.36 5.77 -26.43 -0.15 -1.52 16 17 C -0.16 -2.40 5.54 -27.33 -0.15 -2.55 16 18 C 0.51 10.88 4.94 -10.90 -0.05 10.83 16 19 O -0.55 -14.34 16.81 5.55 0.09 -14.24 16 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 21 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 22 H 0.04 1.19 7.52 -51.93 -0.39 0.80 16 23 H 0.08 1.29 8.12 -51.93 -0.42 0.87 16 24 H 0.07 1.01 4.71 -51.93 -0.24 0.76 16 25 H 0.08 1.20 6.80 -51.93 -0.35 0.85 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.72 5.00 -51.93 -0.26 0.46 16 29 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.05 0.53 8.04 -51.93 -0.42 0.11 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.46 3.79 -51.93 -0.20 1.26 16 33 H 0.07 0.72 7.83 -51.93 -0.41 0.31 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.09 1.14 3.42 -51.93 -0.18 0.96 16 LS Contribution 274.17 15.07 4.13 4.13 Total: -1.00 -32.77 274.17 -7.12 -39.89 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.37 Total: -1.71 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.40 Total: -6.11 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.44 Total: -39.15 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.09 Total: -14.24 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.77 -7.12 -39.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196307458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.900 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds