Wall clock time and date at job start Mon Mar 30 2020 02:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00020 * 2 1 4 4 H 1.48501 * 109.47283 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46926 * 300.00312 * 3 2 1 6 6 H 1.48504 * 109.47052 * 60.00044 * 3 2 1 7 7 C 1.37879 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99922 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99804 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47048 * 179.97438 * 9 7 2 11 11 C 1.46021 * 120.12179 * 270.02321 * 10 9 7 12 12 C 1.53927 * 110.55308 * 277.06735 * 11 10 9 13 13 C 1.54715 * 107.32007 * 258.40416 * 12 11 10 14 14 C 1.52800 * 108.41000 * 109.73233 * 13 12 11 15 15 C 1.51051 * 113.51513 * 297.24544 * 14 13 12 16 16 C 1.52954 * 111.83103 * 292.71854 * 15 14 13 17 17 C 1.53627 * 108.19120 * 92.05289 * 16 15 14 18 18 C 1.34468 * 120.11760 * 90.00123 * 10 9 7 19 19 O 1.21283 * 120.64435 * 355.16588 * 18 10 9 20 20 H 0.97003 * 120.00198 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47068 * 59.99888 * 9 7 2 22 22 H 1.08995 * 109.46800 * 300.00277 * 9 7 2 23 23 H 1.09006 * 109.25778 * 37.34050 * 11 10 9 24 24 H 1.08994 * 109.26289 * 156.82230 * 11 10 9 25 25 H 1.08997 * 109.88559 * 17.85453 * 12 11 10 26 26 H 1.08998 * 109.89152 * 138.87842 * 12 11 10 27 27 H 1.08993 * 109.67883 * 229.46649 * 13 12 11 28 28 H 1.09005 * 109.67317 * 350.00542 * 13 12 11 29 29 H 1.08998 * 108.67441 * 58.28751 * 14 13 12 30 30 H 1.09000 * 108.67203 * 176.20249 * 14 13 12 31 31 H 1.09006 * 109.00797 * 172.12135 * 15 14 13 32 32 H 1.09000 * 109.01443 * 53.32769 * 15 14 13 33 33 H 1.09005 * 109.71452 * 332.38362 * 16 15 14 34 34 H 1.09000 * 109.72119 * 211.72963 * 16 15 14 35 35 H 1.09000 * 109.74973 * 163.12462 * 17 16 15 36 36 H 1.08997 * 109.75841 * 283.82287 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.6787 -4.1687 -1.2654 12 6 1.6678 -5.1874 -1.8221 13 6 2.2138 -6.5994 -1.5033 14 6 1.3268 -7.2289 -0.4301 15 6 1.3403 -6.4772 0.8800 16 6 2.7043 -6.5572 1.5677 17 6 3.5366 -5.3443 1.1247 18 6 2.6424 -4.1260 1.1608 19 8 2.3272 -3.6215 2.2177 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5570 0.8896 23 1 2.8101 -3.3618 -1.9865 24 1 3.6355 -4.6646 -1.1026 25 1 0.6988 -5.0477 -1.3431 26 1 1.5698 -5.0613 -2.9003 27 1 2.1923 -7.2132 -2.4037 28 1 3.2370 -6.5228 -1.1352 29 1 0.3025 -7.2652 -0.8011 30 1 1.6665 -8.2489 -0.2508 31 1 0.5843 -6.9017 1.5407 32 1 1.0985 -5.4312 0.6918 33 1 3.2103 -7.4772 1.2748 34 1 2.5725 -6.5376 2.6495 35 1 4.3763 -5.2053 1.8057 36 1 3.9061 -5.5012 0.1114 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196307458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:29 Heat of formation + Delta-G solvation = -65.524884 kcal Electronic energy + Delta-G solvation = -16618.894480 eV Core-core repulsion = 14101.795380 eV Total energy + Delta-G solvation = -2517.099100 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.35490 -37.89948 -36.61227 -34.74169 -33.63470 -31.32941 -28.83565 -27.60387 -25.38667 -23.95310 -23.12112 -20.78609 -19.49058 -18.61500 -18.13720 -17.26228 -16.72044 -16.00682 -15.86116 -15.36121 -15.01912 -14.32023 -14.27842 -14.03517 -13.50145 -13.38896 -13.05274 -12.89598 -12.85802 -12.64701 -12.41121 -12.25933 -12.15410 -11.82525 -11.68609 -11.40596 -11.13756 -11.03184 -10.67039 -10.39798 -9.38443 -8.24080 -6.39351 1.33917 1.36609 1.48661 1.88206 2.32003 2.50170 3.04666 3.66657 3.80341 3.90563 4.05583 4.16910 4.33092 4.39239 4.45443 4.54625 4.58439 4.85813 4.90494 4.98022 5.03994 5.06600 5.11249 5.13963 5.21820 5.30566 5.33738 5.42796 5.51675 5.57808 5.62979 5.87318 6.05280 6.69039 6.84794 7.26990 7.52706 8.82914 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038733 B = 0.008074 C = 0.007528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.728785 B = 3466.915372 C = 3718.401575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.052 0.948 9 C 0.263 3.737 10 N -0.598 5.598 11 C 0.097 3.903 12 C -0.138 4.138 13 C -0.115 4.115 14 C -0.109 4.109 15 C -0.142 4.142 16 C -0.097 4.097 17 C -0.143 4.143 18 C 0.502 3.498 19 O -0.611 6.611 20 H 0.267 0.733 21 H 0.020 0.980 22 H -0.010 1.010 23 H 0.064 0.936 24 H 0.109 0.891 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.111 0.889 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.101 -15.741 -5.333 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.070 0.930 9 C 0.141 3.859 10 N -0.328 5.328 11 C -0.025 4.025 12 C -0.177 4.177 13 C -0.152 4.152 14 C -0.146 4.146 15 C -0.180 4.180 16 C -0.134 4.134 17 C -0.182 4.182 18 C 0.292 3.708 19 O -0.494 6.494 20 H 0.076 0.924 21 H 0.038 0.962 22 H 0.008 0.992 23 H 0.082 0.918 24 H 0.126 0.874 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.130 0.870 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.774 -15.362 -4.829 17.470 hybrid contribution -0.346 1.494 0.344 1.572 sum 6.428 -13.868 -4.485 15.930 Atomic orbital electron populations 1.70063 1.07583 1.28084 1.51142 1.25902 0.95858 1.03180 0.94433 0.85339 0.78728 0.78522 0.78034 1.19136 1.19214 1.20724 1.21747 0.93222 0.92090 1.51029 0.93000 1.18640 0.88028 0.84124 0.95066 1.48162 1.44437 1.33436 1.06746 1.22241 0.98392 0.97273 0.84572 1.22634 0.98188 0.95605 1.01281 1.22139 0.99646 0.94409 0.99051 1.21128 1.00110 0.99678 0.93712 1.21526 0.97757 1.00774 0.97947 1.21542 0.94913 0.97138 0.99843 1.22405 0.98182 0.91840 1.05817 1.21432 0.81084 0.85352 0.82917 1.90630 1.61629 1.64557 1.32581 0.92409 0.96172 0.99221 0.91789 0.87360 0.93612 0.89685 0.89381 0.90081 0.93062 0.90022 0.92779 0.94250 0.87038 0.92627 0.88484 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 2 C 0.00 0.30 5.46 84.66 0.46 0.76 16 3 Si 0.97 46.12 29.54 68.60 2.03 48.15 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 7 C -0.54 -32.44 9.39 25.60 0.24 -32.20 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.26 14.76 5.17 85.63 0.44 15.21 16 10 N -0.60 -26.16 1.69 -825.39 -1.39 -27.55 16 11 C 0.10 3.07 5.54 86.78 0.48 3.55 16 12 C -0.14 -3.58 5.70 31.49 0.18 -3.41 16 13 C -0.12 -2.10 5.62 31.11 0.17 -1.92 16 14 C -0.11 -2.20 4.90 29.89 0.15 -2.05 16 15 C -0.14 -3.90 5.24 29.94 0.16 -3.75 16 16 C -0.10 -2.33 5.77 30.79 0.18 -2.15 16 17 C -0.14 -4.03 5.54 30.21 0.17 -3.87 16 18 C 0.50 21.78 4.94 87.85 0.43 22.21 16 19 O -0.61 -33.83 16.81 -3.04 -0.05 -33.89 16 20 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 21 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 22 H -0.01 -0.67 7.52 -2.39 -0.02 -0.69 16 23 H 0.06 2.15 8.12 -2.38 -0.02 2.13 16 24 H 0.11 2.61 4.71 -2.39 -0.01 2.60 16 25 H 0.05 1.48 6.80 -2.39 -0.02 1.46 16 26 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 1.27 5.00 -2.38 -0.01 1.25 16 29 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 30 H 0.08 1.23 8.04 -2.39 -0.02 1.21 16 31 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.04 1.44 3.79 -2.39 -0.01 1.43 16 33 H 0.11 1.77 7.83 -2.38 -0.02 1.75 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.12 2.54 3.42 -2.39 -0.01 2.53 16 Total: -1.00 -76.54 274.17 4.99 -71.55 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.06 Total: 6.73 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 3.06 Total: -7.61 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -1.11 Total: -84.93 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.05 Total: -33.89 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -76.54 4.99 -71.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196307458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.025 kcal (2) G-P(sol) polarization free energy of solvation -76.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds