Wall clock time and date at job start Mon Mar 30 2020 03:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99607 * 2 1 4 4 H 1.48505 * 109.46783 * 85.16687 * 3 2 1 5 5 H 1.48503 * 109.47213 * 205.16078 * 3 2 1 6 6 H 1.48498 * 109.47298 * 325.16707 * 3 2 1 7 7 C 1.37879 * 120.00414 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99678 * 173.51381 * 7 2 1 9 9 C 1.50692 * 119.99813 * 353.50623 * 7 2 1 10 10 H 1.08994 * 110.27595 * 55.88311 * 9 7 2 11 11 C 1.54595 * 110.31167 * 293.79483 * 9 7 2 12 12 C 1.55096 * 102.85071 * 219.18601 * 11 9 7 13 13 N 1.48536 * 103.28178 * 37.30644 * 12 11 9 14 14 C 1.46905 * 111.00155 * 200.33241 * 13 12 11 15 15 C 1.53000 * 109.46907 * 287.39707 * 14 13 12 16 16 H 1.09001 * 110.33385 * 307.24621 * 15 14 13 17 17 C 1.54480 * 110.36877 * 184.99798 * 15 14 13 18 18 C 1.54516 * 104.06386 * 217.18974 * 17 15 14 19 19 C 1.54483 * 104.05998 * 0.02562 * 18 17 15 20 20 O 1.44425 * 104.80421 * 23.97926 * 19 18 17 21 21 C 1.47900 * 105.82104 * 320.84528 * 13 12 11 22 22 H 0.96992 * 120.00128 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.72592 * 337.49140 * 11 9 7 24 24 H 1.09000 * 110.72503 * 100.76797 * 11 9 7 25 25 H 1.08998 * 110.59414 * 278.87753 * 12 11 9 26 26 H 1.08997 * 110.68707 * 155.77766 * 12 11 9 27 27 H 1.09003 * 109.46668 * 47.39212 * 14 13 12 28 28 H 1.08996 * 109.47378 * 167.39314 * 14 13 12 29 29 H 1.09006 * 110.51261 * 335.83429 * 17 15 14 30 30 H 1.08998 * 110.51548 * 98.40864 * 17 15 14 31 31 H 1.08996 * 110.50901 * 118.64175 * 18 17 15 32 32 H 1.09001 * 110.50965 * 241.35609 * 18 17 15 33 33 H 1.08997 * 110.36859 * 142.81003 * 19 18 17 34 34 H 1.09001 * 110.37078 * 265.15034 * 19 18 17 35 35 H 1.09000 * 109.91870 * 265.97843 * 21 13 12 36 36 H 1.08996 * 110.08030 * 144.76938 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.3943 2.1055 1.3952 5 1 3.5940 1.4130 -0.5953 6 1 1.5013 2.6211 -0.7997 7 6 2.0046 -1.1940 -0.0005 8 1 3.0794 -1.1968 -0.1062 9 6 1.2584 -2.4950 0.1465 10 1 0.4935 -2.5809 -0.6252 11 6 0.6177 -2.5904 1.5501 12 6 0.8281 -4.0807 1.9248 13 7 2.1695 -4.3871 1.3651 14 6 2.3484 -5.8346 1.1891 15 6 2.5244 -6.4967 2.5572 16 1 3.3182 -6.0029 3.1176 17 6 2.8388 -7.9999 2.3905 18 6 2.0856 -8.6730 3.5597 19 6 1.4046 -7.4967 4.2941 20 8 1.2841 -6.4591 3.2967 21 6 2.2348 -3.6832 0.0660 22 1 -0.4850 0.8400 0.0004 23 1 1.1343 -1.9391 2.2551 24 1 -0.4442 -2.3483 1.5067 25 1 0.0653 -4.7045 1.4589 26 1 0.8242 -4.2099 3.0070 27 1 1.4714 -6.2514 0.6939 28 1 3.2326 -6.0199 0.5793 29 1 2.4639 -8.3648 1.4342 30 1 3.9112 -8.1772 2.4719 31 1 1.3383 -9.3705 3.1815 32 1 2.7854 -9.1832 4.2216 33 1 0.4195 -7.7934 4.6539 34 1 2.0256 -7.1562 5.1227 35 1 1.9347 -4.3567 -0.7368 36 1 3.2470 -3.3205 -0.1126 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251386100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:46 Heat of formation + Delta-G solvation = -50.204436 kcal Electronic energy + Delta-G solvation = -15972.151167 eV Core-core repulsion = 13455.716411 eV Total energy + Delta-G solvation = -2516.434756 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.44630 -37.57419 -33.26663 -32.10575 -31.26113 -28.64160 -28.03213 -25.04567 -23.72211 -21.73966 -20.93741 -19.95446 -19.22966 -16.58421 -16.30841 -15.74126 -15.37935 -14.74957 -14.32142 -13.88159 -13.65425 -13.18972 -12.49709 -12.29479 -12.10269 -11.75883 -11.40630 -11.29655 -11.10890 -10.93787 -10.75262 -10.60944 -10.51164 -10.43477 -9.99538 -9.64683 -9.48641 -9.17522 -8.71959 -8.30976 -7.61792 -5.94461 -3.94644 3.36488 3.43164 3.46543 4.00942 4.49214 4.53402 4.60721 4.84343 4.98202 5.26264 5.30199 5.38648 5.52377 5.55683 5.66221 5.73327 5.82771 5.91026 5.94360 6.03045 6.24486 6.28378 6.37368 6.48509 6.78029 6.94414 7.01538 7.22824 7.34273 7.57841 7.71497 7.89543 7.99189 8.12064 8.53345 9.06849 9.67699 11.16192 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.061767 B = 0.005676 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.209835 B = 4931.830622 C = 5074.110063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.288 1.288 7 C -0.506 4.506 8 H 0.057 0.943 9 C 0.039 3.961 10 H 0.032 0.968 11 C -0.098 4.098 12 C 0.042 3.958 13 N -0.517 5.517 14 C 0.052 3.948 15 C 0.082 3.918 16 H 0.076 0.924 17 C -0.151 4.151 18 C -0.154 4.154 19 C 0.042 3.958 20 O -0.362 6.362 21 C 0.044 3.956 22 H 0.259 0.741 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.028 0.972 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.018 0.982 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.693 -15.285 5.897 16.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.214 1.214 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.020 3.980 10 H 0.050 0.950 11 C -0.137 4.137 12 C -0.086 4.086 13 N -0.241 5.241 14 C -0.077 4.077 15 C 0.024 3.976 16 H 0.093 0.907 17 C -0.189 4.189 18 C -0.192 4.192 19 C -0.036 4.036 20 O -0.281 6.281 21 C -0.083 4.083 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.780 -14.842 6.187 16.518 hybrid contribution -0.036 0.391 -0.472 0.614 sum 3.744 -14.451 5.715 15.985 Atomic orbital electron populations 1.69977 1.05936 1.26374 1.50736 1.24977 0.94786 0.99017 0.95222 0.86629 0.79954 0.83766 0.77935 1.20759 1.19915 1.21432 1.21187 0.93227 0.90425 1.49590 0.92506 1.19493 0.93155 0.91876 0.93488 0.94977 1.22509 1.00002 0.91806 0.99395 1.23307 0.88133 0.97854 0.99270 1.64721 1.30326 1.05392 1.23631 1.22288 1.00736 0.90496 0.94157 1.23059 0.87265 0.93746 0.93504 0.90656 1.22974 1.00861 0.95806 0.99293 1.22920 0.99893 0.98731 0.97644 1.23357 1.00862 0.87347 0.91994 1.89270 1.36767 1.54688 1.47339 1.23071 1.01677 0.95838 0.87711 0.93162 0.92244 0.92633 0.95417 0.91028 0.94537 0.90333 0.90798 0.90635 0.90984 0.90894 0.89543 0.92573 0.96387 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 12.94 55.43 0.72 -25.63 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.51 -14.29 8.35 -34.44 -0.29 -14.58 16 8 H 0.06 1.59 7.36 -52.49 -0.39 1.20 16 9 C 0.04 1.01 2.79 -90.42 -0.25 0.76 16 10 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 11 C -0.10 -2.43 6.07 -24.78 -0.15 -2.58 16 12 C 0.04 0.88 5.38 -1.81 -0.01 0.87 16 13 N -0.52 -10.50 5.25 -230.34 -1.21 -11.71 16 14 C 0.05 0.85 4.44 -3.82 -0.02 0.84 16 15 C 0.08 1.17 3.45 -25.95 -0.09 1.08 16 16 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 17 C -0.15 -1.61 6.63 -25.16 -0.17 -1.77 16 18 C -0.15 -1.45 7.09 -25.16 -0.18 -1.63 16 19 C 0.04 0.47 7.63 37.94 0.29 0.76 16 20 O -0.36 -5.60 9.11 -35.23 -0.32 -5.92 16 21 C 0.04 0.98 6.32 -2.75 -0.02 0.96 16 22 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.06 1.56 7.86 -51.93 -0.41 1.15 16 24 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 25 H 0.03 0.58 7.81 -51.93 -0.41 0.17 16 26 H 0.07 1.48 7.04 -51.93 -0.37 1.11 16 27 H 0.04 0.61 7.83 -51.93 -0.41 0.21 16 28 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 29 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.02 0.37 7.77 -51.93 -0.40 -0.03 16 36 H 0.07 1.57 7.39 -51.93 -0.38 1.18 16 LS Contribution 284.05 15.07 4.28 4.28 Total: -1.00 -30.11 284.05 -8.63 -38.74 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -6.10 Total: -2.89 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -0.97 Total: -13.65 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.49 Total: -37.34 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.32 Total: -5.92 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.11 -8.63 -38.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251386100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.462 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds