Wall clock time and date at job start Mon Mar 30 2020 03:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99607 * 2 1 4 4 H 1.48505 * 109.46783 * 85.16687 * 3 2 1 5 5 H 1.48503 * 109.47213 * 205.16078 * 3 2 1 6 6 H 1.48498 * 109.47298 * 325.16707 * 3 2 1 7 7 C 1.37879 * 120.00414 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99678 * 173.51381 * 7 2 1 9 9 C 1.50692 * 119.99813 * 353.50623 * 7 2 1 10 10 H 1.08994 * 110.27595 * 55.88311 * 9 7 2 11 11 C 1.54595 * 110.31167 * 293.79483 * 9 7 2 12 12 C 1.55096 * 102.85071 * 219.18601 * 11 9 7 13 13 N 1.48536 * 103.28178 * 37.30644 * 12 11 9 14 14 C 1.46905 * 111.00155 * 200.33241 * 13 12 11 15 15 C 1.53000 * 109.46907 * 287.39707 * 14 13 12 16 16 H 1.09001 * 110.33385 * 307.24621 * 15 14 13 17 17 C 1.54480 * 110.36877 * 184.99798 * 15 14 13 18 18 C 1.54516 * 104.06386 * 217.18974 * 17 15 14 19 19 C 1.54483 * 104.05998 * 0.02562 * 18 17 15 20 20 O 1.44425 * 104.80421 * 23.97926 * 19 18 17 21 21 C 1.47900 * 105.82104 * 320.84528 * 13 12 11 22 22 H 0.96992 * 120.00128 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.72592 * 337.49140 * 11 9 7 24 24 H 1.09000 * 110.72503 * 100.76797 * 11 9 7 25 25 H 1.08998 * 110.59414 * 278.87753 * 12 11 9 26 26 H 1.08997 * 110.68707 * 155.77766 * 12 11 9 27 27 H 1.09003 * 109.46668 * 47.39212 * 14 13 12 28 28 H 1.08996 * 109.47378 * 167.39314 * 14 13 12 29 29 H 1.09006 * 110.51261 * 335.83429 * 17 15 14 30 30 H 1.08998 * 110.51548 * 98.40864 * 17 15 14 31 31 H 1.08996 * 110.50901 * 118.64175 * 18 17 15 32 32 H 1.09001 * 110.50965 * 241.35609 * 18 17 15 33 33 H 1.08997 * 110.36859 * 142.81003 * 19 18 17 34 34 H 1.09001 * 110.37078 * 265.15034 * 19 18 17 35 35 H 1.09000 * 109.91870 * 265.97843 * 21 13 12 36 36 H 1.08996 * 110.08030 * 144.76938 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.3943 2.1055 1.3952 5 1 3.5940 1.4130 -0.5953 6 1 1.5013 2.6211 -0.7997 7 6 2.0046 -1.1940 -0.0005 8 1 3.0794 -1.1968 -0.1062 9 6 1.2584 -2.4950 0.1465 10 1 0.4935 -2.5809 -0.6252 11 6 0.6177 -2.5904 1.5501 12 6 0.8281 -4.0807 1.9248 13 7 2.1695 -4.3871 1.3651 14 6 2.3484 -5.8346 1.1891 15 6 2.5244 -6.4967 2.5572 16 1 3.3182 -6.0029 3.1176 17 6 2.8388 -7.9999 2.3905 18 6 2.0856 -8.6730 3.5597 19 6 1.4046 -7.4967 4.2941 20 8 1.2841 -6.4591 3.2967 21 6 2.2348 -3.6832 0.0660 22 1 -0.4850 0.8400 0.0004 23 1 1.1343 -1.9391 2.2551 24 1 -0.4442 -2.3483 1.5067 25 1 0.0653 -4.7045 1.4589 26 1 0.8242 -4.2099 3.0070 27 1 1.4714 -6.2514 0.6939 28 1 3.2326 -6.0199 0.5793 29 1 2.4639 -8.3648 1.4342 30 1 3.9112 -8.1772 2.4719 31 1 1.3383 -9.3705 3.1815 32 1 2.7854 -9.1832 4.2216 33 1 0.4195 -7.7934 4.6539 34 1 2.0256 -7.1562 5.1227 35 1 1.9347 -4.3567 -0.7368 36 1 3.2470 -3.3205 -0.1126 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251386100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:46 Heat of formation + Delta-G solvation = -70.119203 kcal Electronic energy + Delta-G solvation = -15973.014736 eV Core-core repulsion = 13455.716411 eV Total energy + Delta-G solvation = -2517.298325 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.56691 -39.20358 -35.19606 -33.26081 -32.72339 -30.07460 -29.89918 -26.68247 -25.36170 -22.78834 -22.07820 -21.54195 -21.14854 -18.58816 -17.50536 -16.96912 -16.51736 -16.39256 -16.02200 -15.56412 -14.78150 -14.52383 -14.25771 -13.90687 -13.59131 -13.09116 -12.96063 -12.70368 -12.62060 -12.54120 -12.32592 -12.22836 -11.96166 -11.65861 -11.53744 -11.44256 -11.13296 -10.84461 -10.62953 -10.49203 -9.25958 -8.13095 -6.20731 1.41673 1.43264 1.53668 2.44589 3.05208 3.13239 3.20575 3.73123 3.91465 4.08470 4.16603 4.17829 4.26323 4.42793 4.50958 4.57875 4.59420 4.69624 4.73638 4.87907 4.94018 5.00012 5.01862 5.04752 5.17551 5.23406 5.24768 5.39250 5.56538 5.67621 5.84102 6.02398 6.17391 6.29494 6.39341 6.87835 7.45507 8.97577 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.061767 B = 0.005676 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.209835 B = 4931.830622 C = 5074.110063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.030 3.970 10 H 0.000 1.000 11 C -0.092 4.092 12 C 0.062 3.938 13 N -0.523 5.523 14 C 0.051 3.949 15 C 0.080 3.920 16 H 0.069 0.931 17 C -0.144 4.144 18 C -0.147 4.147 19 C 0.033 3.967 20 O -0.396 6.396 21 C 0.055 3.945 22 H 0.260 0.740 23 H 0.038 0.962 24 H 0.035 0.965 25 H 0.029 0.971 26 H 0.079 0.921 27 H 0.033 0.967 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.072 -16.658 6.432 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.189 1.189 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.074 0.926 9 C 0.011 3.989 10 H 0.018 0.982 11 C -0.131 4.131 12 C -0.066 4.066 13 N -0.247 5.247 14 C -0.078 4.078 15 C 0.023 3.977 16 H 0.087 0.913 17 C -0.183 4.183 18 C -0.184 4.184 19 C -0.044 4.044 20 O -0.316 6.316 21 C -0.073 4.073 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.097 0.903 27 H 0.052 0.948 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.170 -16.239 6.725 18.321 hybrid contribution -0.496 0.786 -0.629 1.122 sum 4.674 -15.452 6.096 17.256 Atomic orbital electron populations 1.70101 1.07435 1.27292 1.51494 1.25788 0.95617 1.02584 0.94776 0.85572 0.78916 0.79306 0.78049 1.20313 1.18931 1.20913 1.21517 0.93376 0.91717 1.49648 0.92596 1.19479 0.93274 0.93115 0.93032 0.98165 1.22314 0.98255 0.94140 0.98381 1.23059 0.88869 0.94962 0.99681 1.64689 1.29375 1.08232 1.22441 1.22443 1.01420 0.87668 0.96227 1.23050 0.86825 0.95954 0.91920 0.91334 1.22950 1.02311 0.92975 1.00022 1.22911 1.00242 0.98012 0.97267 1.23591 1.01984 0.87219 0.91576 1.89219 1.37395 1.56436 1.48540 1.22837 1.00279 0.94856 0.89282 0.93069 0.94330 0.94588 0.95266 0.90321 0.94842 0.88379 0.90480 0.88695 0.90250 0.88666 0.88590 0.91958 0.95008 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.79 12.94 21.45 0.28 -55.51 16 2 C 0.01 0.62 5.30 84.66 0.45 1.07 16 3 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.52 -30.09 8.35 25.60 0.21 -29.88 16 8 H 0.06 3.14 7.36 -2.91 -0.02 3.12 16 9 C 0.03 1.60 2.79 -10.66 -0.03 1.57 16 10 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 11 C -0.09 -4.68 6.07 31.86 0.19 -4.49 16 12 C 0.06 2.62 5.38 86.70 0.47 3.09 16 13 N -0.52 -20.84 5.25 -882.67 -4.63 -25.47 16 14 C 0.05 1.56 4.44 86.30 0.38 1.94 16 15 C 0.08 2.11 3.45 31.10 0.11 2.22 16 16 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 17 C -0.14 -2.61 6.63 31.61 0.21 -2.40 16 18 C -0.15 -2.27 7.09 31.61 0.22 -2.04 16 19 C 0.03 0.66 7.63 72.49 0.55 1.22 16 20 O -0.40 -11.67 9.11 -148.98 -1.36 -13.03 16 21 C 0.06 2.42 6.32 86.45 0.55 2.97 16 22 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 23 H 0.04 2.07 7.86 -2.39 -0.02 2.05 16 24 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.03 1.22 7.81 -2.39 -0.02 1.20 16 26 H 0.08 3.23 7.04 -2.39 -0.02 3.21 16 27 H 0.03 1.06 7.83 -2.39 -0.02 1.04 16 28 H 0.10 2.62 8.08 -2.39 -0.02 2.60 16 29 H 0.08 1.36 7.87 -2.38 -0.02 1.34 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.03 1.29 7.77 -2.39 -0.02 1.27 16 36 H 0.07 3.00 7.39 -2.39 -0.02 2.98 16 Total: -1.00 -65.04 284.05 0.66 -64.38 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.03 Total: 7.36 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 3.32 Total: -24.73 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -4.35 Total: -80.99 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -1.36 Total: -13.03 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -65.04 0.66 -64.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251386100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.734 kcal (2) G-P(sol) polarization free energy of solvation -65.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds