Wall clock time and date at job start Mon Mar 30 2020 03:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00358 * 2 1 4 4 H 1.48495 * 109.46911 * 266.12255 * 3 2 1 5 5 H 1.48499 * 109.46897 * 26.12269 * 3 2 1 6 6 H 1.48502 * 109.47148 * 146.12117 * 3 2 1 7 7 C 1.38817 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00141 * 341.09839 * 7 2 1 9 9 N 1.36933 * 119.99722 * 161.10312 * 7 2 1 10 10 C 1.47428 * 125.64992 * 327.36669 * 9 7 2 11 11 C 1.54914 * 104.83131 * 155.60760 * 10 9 7 12 12 C 1.55159 * 101.57991 * 37.01069 * 11 10 9 13 13 C 1.47029 * 125.64701 * 147.06330 * 9 7 2 14 14 H 1.09002 * 109.88041 * 300.73825 * 13 9 7 15 15 C 1.52996 * 109.88061 * 61.90476 * 13 9 7 16 16 H 1.09001 * 110.43465 * 56.40337 * 15 13 9 17 17 C 1.54263 * 110.48721 * 293.85771 * 15 13 9 18 18 C 1.53876 * 106.59836 * 217.71474 * 17 15 13 19 19 C 1.54266 * 106.59884 * 0.02562 * 18 17 15 20 20 C 1.54888 * 104.19648 * 23.60885 * 19 18 17 21 21 H 1.08999 * 110.75327 * 80.37510 * 20 19 18 22 22 O 1.42897 * 110.75692 * 203.73942 * 20 19 18 23 23 H 0.97003 * 119.99921 * 0.02562 * 1 2 3 24 24 H 1.08995 * 110.37079 * 274.44683 * 10 9 7 25 25 H 1.09003 * 110.36355 * 36.66505 * 10 9 7 26 26 H 1.08996 * 111.00358 * 155.08752 * 11 10 9 27 27 H 1.09002 * 111.00627 * 278.93819 * 11 10 9 28 28 H 1.09001 * 110.71477 * 82.86026 * 12 11 10 29 29 H 1.08996 * 110.71869 * 205.95416 * 12 11 10 30 30 H 1.08994 * 110.03302 * 336.99655 * 17 15 13 31 31 H 1.08997 * 110.03389 * 98.38472 * 17 15 13 32 32 H 1.08994 * 110.03510 * 119.28707 * 18 17 15 33 33 H 1.09000 * 110.03061 * 240.71669 * 18 17 15 34 34 H 1.09004 * 110.48646 * 142.28961 * 19 18 17 35 35 H 1.09001 * 110.48827 * 264.80006 * 19 18 17 36 36 H 0.96699 * 114.00841 * 293.33121 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5797 1.9990 -1.3968 5 1 1.4092 2.6749 0.6164 6 1 3.5044 1.4651 0.7805 7 6 2.0102 -1.2022 0.0005 8 1 1.5138 -2.1121 0.3039 9 7 3.3241 -1.2344 -0.3835 10 6 3.9439 -0.3642 -1.3995 11 6 5.4483 -0.3334 -1.0308 12 6 5.6809 -1.7900 -0.5495 13 6 4.3520 -2.1382 0.1535 14 1 4.4513 -1.9893 1.2287 15 6 3.9726 -3.5909 -0.1408 16 1 3.8281 -3.7371 -1.2112 17 6 2.6983 -3.9838 0.6347 18 6 2.8932 -5.4402 1.0915 19 6 4.2795 -5.8812 0.5782 20 6 5.0584 -4.5543 0.4001 21 1 5.4459 -4.2026 1.3563 22 8 6.1149 -4.7108 -0.5492 23 1 -0.4850 0.8401 -0.0004 24 1 3.8060 -0.7856 -2.3952 25 1 3.5190 0.6384 -1.3504 26 1 6.0600 -0.1081 -1.9043 27 1 5.6393 0.3786 -0.2278 28 1 5.8541 -2.4531 -1.3971 29 1 6.5146 -1.8361 0.1511 30 1 2.5732 -3.3344 1.5010 31 1 1.8272 -3.9094 -0.0163 32 1 2.8627 -5.4976 2.1795 33 1 2.1169 -6.0733 0.6619 34 1 4.7733 -6.5179 1.3124 35 1 4.1856 -6.4016 -0.3749 36 1 6.8203 -5.3049 -0.2586 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253091966.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:48 Heat of formation + Delta-G solvation = -33.592813 kcal Electronic energy + Delta-G solvation = -16714.831027 eV Core-core repulsion = 14199.116605 eV Total energy + Delta-G solvation = -2515.714422 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.08296 -36.89144 -34.72448 -32.48931 -30.14062 -29.76979 -27.19837 -25.71689 -24.14301 -20.96978 -20.44258 -19.70712 -19.08732 -17.13855 -16.83416 -15.86634 -14.87892 -14.56121 -14.02810 -13.66581 -13.25560 -12.92980 -12.45855 -12.31645 -12.11442 -11.81451 -11.43171 -11.30136 -11.15554 -11.01186 -10.76988 -10.38140 -10.17624 -10.02635 -9.83885 -9.64943 -9.59487 -9.51085 -9.25235 -8.40872 -6.75381 -5.90323 -3.28905 3.36233 3.50547 3.56542 4.46304 4.59855 4.86256 4.96403 5.20517 5.28344 5.40684 5.54424 5.59171 5.66622 5.72877 5.86112 5.97597 5.99001 6.10104 6.15421 6.26498 6.32111 6.34826 6.47425 6.53603 6.60191 6.64527 6.75601 6.93171 6.99481 7.02213 7.18519 7.89328 7.99397 8.43742 8.95296 9.76391 10.35431 11.25519 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031667 B = 0.010648 C = 0.008334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.996185 B = 2628.999060 C = 3358.934467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.027 3.973 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.306 1.306 6 H -0.274 1.274 7 C -0.247 4.247 8 H 0.099 0.901 9 N -0.602 5.602 10 C 0.112 3.888 11 C -0.140 4.140 12 C -0.118 4.118 13 C 0.166 3.834 14 H 0.037 0.963 15 C -0.081 4.081 16 H 0.076 0.924 17 C -0.109 4.109 18 C -0.126 4.126 19 C -0.154 4.154 20 C 0.100 3.900 21 H 0.059 0.941 22 O -0.559 6.559 23 H 0.262 0.738 24 H 0.029 0.971 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.302 -8.472 1.059 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.173 4.173 3 Si 0.719 3.281 4 H -0.213 1.213 5 H -0.235 1.235 6 H -0.199 1.199 7 C -0.374 4.374 8 H 0.116 0.884 9 N -0.328 5.328 10 C -0.013 4.013 11 C -0.178 4.178 12 C -0.156 4.156 13 C 0.059 3.941 14 H 0.055 0.945 15 C -0.101 4.101 16 H 0.094 0.906 17 C -0.146 4.146 18 C -0.163 4.163 19 C -0.192 4.192 20 C 0.041 3.959 21 H 0.077 0.923 22 O -0.363 6.363 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 10.652 -7.944 0.762 13.310 hybrid contribution 0.684 0.598 0.355 0.975 sum 11.336 -7.347 1.117 13.555 Atomic orbital electron populations 1.69806 1.05686 1.26534 1.53227 1.25356 0.95171 0.97639 0.99089 0.86865 0.79582 0.84484 0.77133 1.21301 1.23462 1.19923 1.18934 0.82982 0.94714 1.40796 0.88394 1.44724 1.06181 1.40637 1.41210 1.21992 0.90988 0.95396 0.92882 1.22807 0.97490 0.97283 1.00233 1.22541 0.96745 0.95901 1.00430 1.21021 0.88143 0.89131 0.95813 0.94500 1.22391 0.92370 0.94986 1.00383 0.90556 1.22202 0.98016 0.93698 1.00717 1.22129 0.96010 0.98040 1.00153 1.23015 0.97147 0.97977 1.01092 1.22952 0.87150 0.94558 0.91243 0.92289 1.86577 1.34403 1.69740 1.45604 0.92808 0.95308 0.93752 0.91914 0.92087 0.90623 0.92395 0.90832 0.90724 0.92341 0.92231 0.92442 0.91223 0.78800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.08 13.97 55.49 0.78 -27.31 16 2 C 0.03 0.78 5.45 -17.43 -0.09 0.69 16 3 Si 0.89 23.13 25.09 -169.99 -4.26 18.87 16 4 H -0.28 -7.24 6.41 56.52 0.36 -6.87 16 5 H -0.31 -8.07 7.11 56.52 0.40 -7.67 16 6 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.25 -6.89 9.61 -15.06 -0.14 -7.03 16 8 H 0.10 2.81 4.91 -52.49 -0.26 2.55 16 9 N -0.60 -14.71 2.73 -162.57 -0.44 -15.15 16 10 C 0.11 2.55 6.26 -2.52 -0.02 2.53 16 11 C -0.14 -2.61 7.09 -24.58 -0.17 -2.79 16 12 C -0.12 -2.09 5.51 -24.90 -0.14 -2.23 16 13 C 0.17 3.37 2.63 -66.95 -0.18 3.19 16 14 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 15 C -0.08 -1.48 2.22 -88.95 -0.20 -1.67 16 16 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 17 C -0.11 -2.00 4.47 -25.61 -0.11 -2.11 16 18 C -0.13 -1.82 6.80 -25.61 -0.17 -2.00 16 19 C -0.15 -2.01 6.55 -25.07 -0.16 -2.17 16 20 C 0.10 1.45 3.36 -24.72 -0.08 1.37 16 21 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 22 O -0.56 -7.55 11.96 -35.23 -0.42 -7.97 16 23 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 1.09 2.70 -51.93 -0.14 0.95 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.08 1.34 6.94 -51.93 -0.36 0.97 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.48 7.13 -51.93 -0.37 1.11 16 31 H 0.07 1.54 7.13 -51.93 -0.37 1.17 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.37 3.21 9.12 45.56 0.42 3.62 16 LS Contribution 269.99 15.07 4.07 4.07 Total: -1.00 -31.10 269.99 -6.66 -37.77 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -4.90 Total: 1.94 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -1.48 Total: -12.22 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.33 Total: -42.45 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.42 Total: -7.97 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.26 Total: 18.87 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.10 -6.66 -37.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253091966.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.174 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds