Wall clock time and date at job start Mon Mar 30 2020 03:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 119.99691 * 2 1 4 4 H 1.48497 * 109.46791 * 239.99737 * 3 2 1 5 5 H 1.48501 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47239 * 119.99564 * 3 2 1 7 7 C 1.37877 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00030 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.64151 * 56.85034 * 9 7 2 11 11 C 1.54593 * 110.72661 * 293.50256 * 9 7 2 12 12 C 1.53988 * 105.13853 * 219.68321 * 11 9 7 13 13 N 1.48064 * 107.14543 * 358.91767 * 12 11 9 14 14 C 1.46902 * 111.16437 * 145.63064 * 13 12 11 15 15 H 1.08996 * 109.52135 * 297.48567 * 14 13 12 16 16 C 1.53178 * 109.51627 * 57.60454 * 14 13 12 17 17 C 1.53183 * 109.03022 * 176.88562 * 16 14 13 18 18 C 1.53095 * 109.16618 * 303.02034 * 17 16 14 19 19 O 1.42902 * 109.41252 * 57.60511 * 18 17 16 20 20 C 1.42899 * 114.10244 * 298.84580 * 19 18 17 21 21 C 1.48537 * 105.73449 * 25.07892 * 13 12 11 22 22 H 0.96994 * 120.00150 * 0.02562 * 1 2 3 23 23 H 1.09005 * 110.30927 * 338.60104 * 11 9 7 24 24 H 1.08999 * 110.30665 * 100.66671 * 11 9 7 25 25 H 1.09006 * 109.91426 * 118.12915 * 12 11 9 26 26 H 1.09000 * 109.91854 * 239.41907 * 12 11 9 27 27 H 1.09000 * 109.54629 * 296.75111 * 16 14 13 28 28 H 1.08996 * 109.54321 * 57.02484 * 16 14 13 29 29 H 1.08996 * 109.52148 * 62.92549 * 17 16 14 30 30 H 1.09003 * 109.52010 * 183.11487 * 17 16 14 31 31 H 1.08994 * 109.48390 * 177.59109 * 18 17 16 32 32 H 1.09001 * 109.47897 * 297.62978 * 18 17 16 33 33 H 1.08993 * 109.48125 * 301.17491 * 20 19 18 34 34 H 1.09002 * 109.48401 * 181.13859 * 20 19 18 35 35 H 1.09002 * 110.66696 * 202.50331 * 21 13 12 36 36 H 1.09001 * 110.66368 * 79.54170 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5763 -2.5533 -0.8537 11 6 0.4777 -2.6844 1.3262 12 6 0.6353 -4.1751 1.6788 13 7 1.4300 -4.7981 0.5959 14 6 2.2995 -5.8600 1.1198 15 1 3.0141 -5.4320 1.8228 16 6 1.4471 -6.9134 1.8340 17 6 2.3547 -8.0530 2.3075 18 6 3.1051 -8.6308 1.1046 19 8 3.8528 -7.5927 0.4679 20 6 3.0519 -6.5224 -0.0372 21 6 2.2321 -3.6984 0.0011 22 1 -0.4850 0.8400 -0.0004 23 1 0.9132 -2.0625 2.1084 24 1 -0.5745 -2.4359 1.1882 25 1 1.1610 -4.2786 2.6280 26 1 -0.3450 -4.6476 1.7408 27 1 0.9520 -6.4607 2.6931 28 1 0.6990 -7.3054 1.1450 29 1 3.0712 -7.6701 3.0341 30 1 1.7491 -8.8335 2.7681 31 1 3.7844 -9.4137 1.4417 32 1 2.3897 -9.0498 0.3969 33 1 2.3358 -6.9138 -0.7597 34 1 3.6929 -5.7864 -0.5226 35 1 2.5340 -3.9491 -1.0158 36 1 3.1044 -3.4817 0.6177 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259692037.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:12 Heat of formation + Delta-G solvation = -54.881559 kcal Electronic energy + Delta-G solvation = -16139.645053 eV Core-core repulsion = 13623.007482 eV Total energy + Delta-G solvation = -2516.637571 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.56507 -37.49740 -33.84793 -32.60587 -31.17997 -28.47470 -27.84484 -24.97126 -24.35129 -22.60235 -20.59167 -19.71892 -19.21303 -16.62808 -16.07199 -15.99154 -14.99477 -14.82566 -14.48421 -14.03440 -13.91121 -13.30244 -12.80605 -12.55518 -12.22106 -11.82468 -11.56848 -11.15850 -11.08505 -11.02209 -10.91509 -10.61004 -10.48685 -10.26767 -10.07177 -9.67186 -9.34451 -9.20330 -8.78904 -8.39191 -7.78627 -6.02067 -4.05426 3.31864 3.36632 3.39107 3.89004 4.41464 4.59425 4.87817 4.89846 4.97989 5.19240 5.31246 5.33769 5.50654 5.64873 5.78857 5.80335 5.83995 5.95110 5.98166 6.08100 6.19954 6.25806 6.35643 6.44878 6.53272 6.83334 7.10977 7.14761 7.21694 7.53893 7.64867 7.73404 7.87162 8.03274 8.44282 8.97303 9.58835 11.07971 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.055298 B = 0.006120 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.222986 B = 4574.059898 C = 4859.789254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.054 3.946 10 H 0.040 0.960 11 C -0.106 4.106 12 C 0.038 3.962 13 N -0.516 5.516 14 C 0.044 3.956 15 H 0.044 0.956 16 C -0.115 4.115 17 C -0.154 4.154 18 C 0.060 3.940 19 O -0.386 6.386 20 C 0.070 3.930 21 C 0.039 3.961 22 H 0.261 0.739 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.027 0.973 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.906 -13.662 3.417 14.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.073 0.927 9 C 0.035 3.965 10 H 0.058 0.942 11 C -0.145 4.145 12 C -0.089 4.089 13 N -0.241 5.241 14 C -0.066 4.066 15 H 0.062 0.938 16 C -0.153 4.153 17 C -0.192 4.192 18 C -0.017 4.017 19 O -0.304 6.304 20 C -0.006 4.006 21 C -0.088 4.088 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.616 -13.804 3.015 14.370 hybrid contribution 0.625 1.339 0.805 1.683 sum 3.241 -12.465 3.820 13.434 Atomic orbital electron populations 1.69959 1.05894 1.26642 1.50115 1.24964 0.94822 0.99004 0.94984 0.86689 0.79624 0.83243 0.78620 1.20221 1.21302 1.20344 1.21058 0.92741 0.90412 1.51357 0.92698 1.19522 0.92454 0.90765 0.93782 0.94231 1.22374 1.01410 0.90495 1.00224 1.22934 0.96804 0.97287 0.91908 1.64772 1.21803 1.09898 1.27660 1.22361 0.94485 0.93629 0.96089 0.93796 1.21665 0.97886 0.95366 1.00408 1.22206 0.99439 0.98798 0.98805 1.22552 0.95534 0.90030 0.93596 1.87922 1.34273 1.32078 1.76088 1.22576 0.94621 0.88756 0.94689 1.23415 0.96214 0.91500 0.97695 0.92962 0.92810 0.92168 0.95419 0.92038 0.91514 0.91106 0.91311 0.90995 0.89289 0.93249 0.92363 0.88745 0.91813 0.94724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 12.77 55.43 0.71 -24.85 16 2 C 0.06 1.78 5.36 -17.82 -0.10 1.69 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.17 8.37 -34.44 -0.29 -14.46 16 8 H 0.05 1.48 7.77 -52.49 -0.41 1.08 16 9 C 0.05 1.35 2.90 -89.91 -0.26 1.09 16 10 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 11 C -0.11 -2.49 5.81 -25.38 -0.15 -2.63 16 12 C 0.04 0.74 5.46 -2.67 -0.01 0.73 16 13 N -0.52 -9.76 5.11 -222.19 -1.14 -10.90 16 14 C 0.04 0.71 1.83 -67.57 -0.12 0.58 16 15 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 16 C -0.12 -1.56 5.09 -26.54 -0.14 -1.69 16 17 C -0.15 -1.71 6.14 -26.59 -0.16 -1.88 16 18 C 0.06 0.67 6.84 37.21 0.25 0.93 16 19 O -0.39 -5.62 10.76 -35.23 -0.38 -6.00 16 20 C 0.07 1.06 6.05 37.20 0.23 1.29 16 21 C 0.04 0.82 5.04 -1.90 -0.01 0.81 16 22 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 23 H 0.05 1.33 7.84 -51.93 -0.41 0.92 16 24 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 25 H 0.03 0.51 7.41 -51.93 -0.39 0.12 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.07 0.90 7.05 -51.93 -0.37 0.54 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.45 7.21 -51.93 -0.37 1.08 16 35 H 0.06 1.29 7.76 -51.93 -0.40 0.89 16 36 H 0.03 0.75 7.81 -51.93 -0.41 0.34 16 LS Contribution 280.84 15.07 4.23 4.23 Total: -1.00 -28.45 280.84 -8.46 -36.91 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.10 Total: -2.09 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -0.76 Total: -13.55 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.43 Total: -35.74 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.38 Total: -6.00 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.45 -8.46 -36.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692037.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.973 kcal (2) G-P(sol) polarization free energy of solvation -28.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds