Wall clock time and date at job start Mon Mar 30 2020 03:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 119.99691 * 2 1 4 4 H 1.48497 * 109.46791 * 239.99737 * 3 2 1 5 5 H 1.48501 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47239 * 119.99564 * 3 2 1 7 7 C 1.37877 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00030 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.64151 * 56.85034 * 9 7 2 11 11 C 1.54593 * 110.72661 * 293.50256 * 9 7 2 12 12 C 1.53988 * 105.13853 * 219.68321 * 11 9 7 13 13 N 1.48064 * 107.14543 * 358.91767 * 12 11 9 14 14 C 1.46902 * 111.16437 * 145.63064 * 13 12 11 15 15 H 1.08996 * 109.52135 * 297.48567 * 14 13 12 16 16 C 1.53178 * 109.51627 * 57.60454 * 14 13 12 17 17 C 1.53183 * 109.03022 * 176.88562 * 16 14 13 18 18 C 1.53095 * 109.16618 * 303.02034 * 17 16 14 19 19 O 1.42902 * 109.41252 * 57.60511 * 18 17 16 20 20 C 1.42899 * 114.10244 * 298.84580 * 19 18 17 21 21 C 1.48537 * 105.73449 * 25.07892 * 13 12 11 22 22 H 0.96994 * 120.00150 * 0.02562 * 1 2 3 23 23 H 1.09005 * 110.30927 * 338.60104 * 11 9 7 24 24 H 1.08999 * 110.30665 * 100.66671 * 11 9 7 25 25 H 1.09006 * 109.91426 * 118.12915 * 12 11 9 26 26 H 1.09000 * 109.91854 * 239.41907 * 12 11 9 27 27 H 1.09000 * 109.54629 * 296.75111 * 16 14 13 28 28 H 1.08996 * 109.54321 * 57.02484 * 16 14 13 29 29 H 1.08996 * 109.52148 * 62.92549 * 17 16 14 30 30 H 1.09003 * 109.52010 * 183.11487 * 17 16 14 31 31 H 1.08994 * 109.48390 * 177.59109 * 18 17 16 32 32 H 1.09001 * 109.47897 * 297.62978 * 18 17 16 33 33 H 1.08993 * 109.48125 * 301.17491 * 20 19 18 34 34 H 1.09002 * 109.48401 * 181.13859 * 20 19 18 35 35 H 1.09002 * 110.66696 * 202.50331 * 21 13 12 36 36 H 1.09001 * 110.66368 * 79.54170 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5763 -2.5533 -0.8537 11 6 0.4777 -2.6844 1.3262 12 6 0.6353 -4.1751 1.6788 13 7 1.4300 -4.7981 0.5959 14 6 2.2995 -5.8600 1.1198 15 1 3.0141 -5.4320 1.8228 16 6 1.4471 -6.9134 1.8340 17 6 2.3547 -8.0530 2.3075 18 6 3.1051 -8.6308 1.1046 19 8 3.8528 -7.5927 0.4679 20 6 3.0519 -6.5224 -0.0372 21 6 2.2321 -3.6984 0.0011 22 1 -0.4850 0.8400 -0.0004 23 1 0.9132 -2.0625 2.1084 24 1 -0.5745 -2.4359 1.1882 25 1 1.1610 -4.2786 2.6280 26 1 -0.3450 -4.6476 1.7408 27 1 0.9520 -6.4607 2.6931 28 1 0.6990 -7.3054 1.1450 29 1 3.0712 -7.6701 3.0341 30 1 1.7491 -8.8335 2.7681 31 1 3.7844 -9.4137 1.4417 32 1 2.3897 -9.0498 0.3969 33 1 2.3358 -6.9138 -0.7597 34 1 3.6929 -5.7864 -0.5226 35 1 2.5340 -3.9491 -1.0158 36 1 3.1044 -3.4817 0.6177 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259692037.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:11 Heat of formation + Delta-G solvation = -73.555613 kcal Electronic energy + Delta-G solvation = -16140.454821 eV Core-core repulsion = 13623.007482 eV Total energy + Delta-G solvation = -2517.447339 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81788 -38.97635 -35.47190 -34.10071 -32.63782 -30.25207 -29.33263 -26.62008 -25.73710 -23.90291 -21.97364 -21.36340 -20.78871 -18.46597 -17.41861 -17.24574 -16.52758 -16.33712 -16.04363 -15.46288 -15.12530 -14.66866 -14.38801 -13.97071 -13.67320 -13.45810 -13.01458 -12.98126 -12.68381 -12.52310 -12.33756 -12.21954 -12.06217 -11.69298 -11.54200 -11.22702 -11.08994 -10.85319 -10.51201 -10.42739 -9.34083 -8.14835 -6.25293 1.41397 1.42630 1.50400 2.41687 2.77394 3.16425 3.26532 3.72242 3.87077 3.99232 4.06175 4.14901 4.26751 4.37946 4.44798 4.51536 4.59009 4.71452 4.76722 4.82448 4.85964 4.96850 5.00340 5.04518 5.15137 5.23923 5.26411 5.34488 5.58137 5.75973 5.83334 5.98688 6.08144 6.35518 6.39072 6.84602 7.42642 8.94854 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.055298 B = 0.006120 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.222986 B = 4574.059898 C = 4859.789254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.015 3.985 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.054 0.946 9 C 0.044 3.956 10 H 0.006 0.994 11 C -0.099 4.099 12 C 0.050 3.950 13 N -0.516 5.516 14 C 0.043 3.957 15 H 0.031 0.969 16 C -0.113 4.113 17 C -0.147 4.147 18 C 0.051 3.949 19 O -0.400 6.400 20 C 0.076 3.924 21 C 0.053 3.947 22 H 0.262 0.738 23 H 0.034 0.966 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 -15.078 4.081 16.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.072 0.928 9 C 0.025 3.975 10 H 0.024 0.976 11 C -0.138 4.138 12 C -0.078 4.078 13 N -0.241 5.241 14 C -0.066 4.066 15 H 0.049 0.951 16 C -0.151 4.151 17 C -0.185 4.185 18 C -0.025 4.025 19 O -0.319 6.319 20 C -0.001 4.001 21 C -0.075 4.075 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.312 -15.242 3.682 16.026 hybrid contribution 0.402 1.726 0.595 1.869 sum 3.714 -13.516 4.278 14.655 Atomic orbital electron populations 1.70084 1.07308 1.27442 1.50915 1.25755 0.95645 1.02451 0.94591 0.85659 0.78410 0.78983 0.78898 1.19489 1.20900 1.19672 1.21408 0.92931 0.91783 1.51297 0.92803 1.19477 0.92925 0.91894 0.93251 0.97602 1.22167 0.99523 0.93293 0.98778 1.22808 0.98127 0.94365 0.92492 1.64771 1.22016 1.09515 1.27814 1.22461 0.94382 0.93301 0.96488 0.95077 1.21665 0.97955 0.95332 1.00122 1.22183 0.99184 0.98516 0.98662 1.22845 0.96304 0.89609 0.93722 1.87908 1.35038 1.32468 1.76464 1.22429 0.94408 0.88999 0.94259 1.23151 0.95115 0.90813 0.98372 0.92958 0.94740 0.94219 0.94101 0.90214 0.91493 0.90813 0.91688 0.88199 0.86921 0.92167 0.91937 0.89718 0.91098 0.95257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.02 12.77 21.45 0.27 -53.75 16 2 C 0.01 0.83 5.36 84.65 0.45 1.28 16 3 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.54 -29.93 8.37 25.60 0.21 -29.72 16 8 H 0.05 2.94 7.77 -2.91 -0.02 2.92 16 9 C 0.04 2.25 2.90 -10.34 -0.03 2.22 16 10 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 11 C -0.10 -4.73 5.81 31.47 0.18 -4.54 16 12 C 0.05 1.88 5.46 86.41 0.47 2.35 16 13 N -0.52 -19.09 5.11 -856.89 -4.38 -23.47 16 14 C 0.04 1.31 1.83 45.00 0.08 1.40 16 15 H 0.03 1.05 8.00 -2.39 -0.02 1.03 16 16 C -0.11 -2.75 5.09 30.72 0.16 -2.59 16 17 C -0.15 -2.78 6.14 30.69 0.19 -2.59 16 18 C 0.05 0.99 6.84 72.01 0.49 1.48 16 19 O -0.40 -10.83 10.76 -148.98 -1.60 -12.43 16 20 C 0.08 2.19 6.05 72.01 0.44 2.62 16 21 C 0.05 2.25 5.04 86.65 0.44 2.69 16 22 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 23 H 0.03 1.73 7.84 -2.38 -0.02 1.71 16 24 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.04 1.45 7.41 -2.38 -0.02 1.43 16 26 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.07 1.63 7.05 -2.39 -0.02 1.61 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 2.55 7.21 -2.39 -0.02 2.53 16 35 H 0.07 2.88 7.76 -2.39 -0.02 2.86 16 36 H 0.03 1.27 7.81 -2.39 -0.02 1.25 16 Total: -1.00 -61.34 280.84 0.43 -60.92 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.03 Total: 8.22 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 3.08 Total: -25.39 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -4.11 Total: -77.21 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -1.60 Total: -12.43 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -61.34 0.43 -60.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692037.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.639 kcal (2) G-P(sol) polarization free energy of solvation -61.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds