Wall clock time and date at job start Mon Mar 30 2020 03:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99923 * 2 1 4 4 H 1.48500 * 109.47029 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47126 * 300.00355 * 3 2 1 6 6 H 1.48501 * 109.46859 * 60.00198 * 3 2 1 7 7 C 1.37875 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99718 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99979 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.27378 * 302.08381 * 9 7 2 11 11 C 1.54593 * 110.39572 * 64.23008 * 9 7 2 12 12 C 1.54943 * 102.91873 * 140.91547 * 11 9 7 13 13 N 1.48529 * 103.23110 * 322.58517 * 12 11 9 14 14 C 1.46896 * 111.00073 * 159.72217 * 13 12 11 15 15 H 1.09000 * 109.52039 * 297.60667 * 14 13 12 16 16 C 1.53170 * 109.52187 * 57.73222 * 14 13 12 17 17 C 1.53188 * 109.03109 * 176.82516 * 16 14 13 18 18 C 1.53089 * 109.21559 * 303.11252 * 17 16 14 19 19 O 1.42911 * 109.41170 * 57.57528 * 18 17 16 20 20 C 1.42898 * 114.09847 * 298.84200 * 19 18 17 21 21 C 1.47906 * 105.81645 * 39.20833 * 13 12 11 22 22 H 0.97009 * 119.99859 * 359.97438 * 1 2 3 23 23 H 1.08999 * 110.72465 * 259.27602 * 11 9 7 24 24 H 1.09004 * 110.72424 * 22.38286 * 11 9 7 25 25 H 1.08995 * 110.66363 * 81.02624 * 12 11 9 26 26 H 1.09004 * 110.66081 * 203.98526 * 12 11 9 27 27 H 1.09003 * 109.54535 * 296.75384 * 16 14 13 28 28 H 1.08998 * 109.54810 * 57.02246 * 16 14 13 29 29 H 1.09007 * 109.52705 * 183.17457 * 17 16 14 30 30 H 1.08998 * 109.52313 * 63.05185 * 17 16 14 31 31 H 1.09005 * 109.48170 * 297.59761 * 18 17 16 32 32 H 1.09000 * 109.48408 * 177.55477 * 18 17 16 33 33 H 1.09011 * 109.48050 * 301.17979 * 20 19 18 34 34 H 1.08995 * 109.49334 * 181.15194 * 20 19 18 35 35 H 1.08998 * 109.91583 * 215.31824 * 21 13 12 36 36 H 1.09004 * 109.91554 * 94.02407 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5915 -2.5544 0.8666 11 6 0.4366 -2.6510 -1.3047 12 6 0.6011 -4.1541 -1.6427 13 7 2.0047 -4.4393 -1.2496 14 6 2.2109 -5.8786 -1.0410 15 1 1.5795 -6.2220 -0.2215 16 6 1.8475 -6.6385 -2.3203 17 6 2.1416 -8.1281 -2.1172 18 6 3.6133 -8.3034 -1.7340 19 8 3.8903 -7.5467 -0.5537 20 6 3.6800 -6.1408 -0.6993 21 6 2.2345 -3.6841 0.0012 22 1 -0.4850 0.8401 0.0004 23 1 -0.6120 -2.4061 -1.1357 24 1 0.8544 -2.0271 -2.0949 25 1 -0.0926 -4.7580 -1.0578 26 1 0.4548 -4.3267 -2.7090 27 1 0.7882 -6.5013 -2.5375 28 1 2.4433 -6.2602 -3.1510 29 1 1.9390 -8.6689 -3.0417 30 1 1.5087 -8.5190 -1.3205 31 1 4.2456 -7.9505 -2.5488 32 1 3.8170 -9.3576 -1.5460 33 1 4.3132 -5.7596 -1.5006 34 1 3.9318 -5.6369 0.2338 35 1 3.2599 -3.3155 0.0293 36 1 2.0436 -4.3248 0.8621 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259692040.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:13 Heat of formation + Delta-G solvation = -53.668929 kcal Electronic energy + Delta-G solvation = -16168.040759 eV Core-core repulsion = 13651.455772 eV Total energy + Delta-G solvation = -2516.584988 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.56458 -37.51191 -33.84966 -32.59025 -31.15613 -28.47577 -27.82712 -24.93902 -24.32138 -22.62300 -20.63099 -19.64843 -19.23363 -16.54323 -16.37839 -15.87866 -15.05144 -14.74608 -14.47485 -14.26583 -13.58304 -13.15386 -12.86497 -12.55342 -12.25341 -11.88264 -11.38243 -11.22101 -11.06661 -10.95207 -10.88229 -10.68167 -10.45475 -10.22364 -10.04541 -9.66307 -9.33167 -9.26823 -8.76918 -8.39255 -7.74843 -5.99917 -4.01577 3.31621 3.39666 3.44095 3.89418 4.46020 4.58472 4.88156 4.90144 4.98649 5.18533 5.33545 5.34715 5.51047 5.65431 5.78946 5.82216 5.85101 5.95772 6.00973 6.08102 6.18311 6.24461 6.29767 6.40020 6.58189 6.87359 7.12584 7.17895 7.24186 7.45098 7.65390 7.80604 7.91483 8.03471 8.45603 9.00174 9.61925 11.10310 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.054225 B = 0.006245 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.246735 B = 4482.172287 C = 4795.006116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.506 4.506 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.092 4.092 12 C 0.032 3.968 13 N -0.509 5.509 14 C 0.043 3.957 15 H 0.043 0.957 16 C -0.115 4.115 17 C -0.154 4.154 18 C 0.060 3.940 19 O -0.386 6.386 20 C 0.070 3.930 21 C 0.043 3.957 22 H 0.259 0.741 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.028 0.972 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.367 -13.385 -4.154 14.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.131 4.131 12 C -0.095 4.095 13 N -0.235 5.235 14 C -0.067 4.067 15 H 0.060 0.940 16 C -0.153 4.153 17 C -0.192 4.192 18 C -0.017 4.017 19 O -0.304 6.304 20 C -0.007 4.007 21 C -0.084 4.084 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.047 0.953 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 3.663 -13.203 -4.376 14.384 hybrid contribution -0.368 0.793 0.362 0.947 sum 3.295 -12.410 -4.014 13.453 Atomic orbital electron populations 1.69980 1.05914 1.26337 1.50840 1.24983 0.94841 0.99076 0.95201 0.86558 0.80214 0.83899 0.77470 1.19752 1.21098 1.21152 1.21212 0.92760 0.90143 1.50289 0.92415 1.19497 0.92502 0.91947 0.94002 0.95241 1.22408 1.00272 0.90508 0.99884 1.23311 0.87993 0.99274 0.98963 1.64750 1.23559 1.04246 1.30931 1.22379 0.97060 0.90482 0.96731 0.93952 1.21652 1.02017 0.93646 0.97954 1.22205 0.97731 0.97299 1.02002 1.22552 0.94817 0.96144 0.88200 1.87918 1.88198 1.18841 1.35453 1.22584 0.94885 0.80678 1.02533 1.23127 1.01880 0.95473 0.87970 0.93172 0.92302 0.91963 0.95341 0.91814 0.91503 0.91060 0.90997 0.91346 0.93234 0.89298 0.92300 0.88781 0.91017 0.96088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 12.63 55.43 0.70 -24.99 16 2 C 0.06 1.68 5.34 -17.82 -0.10 1.58 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -13.90 8.38 -34.44 -0.29 -14.19 16 8 H 0.06 1.58 7.34 -52.49 -0.39 1.19 16 9 C 0.04 0.99 2.86 -90.42 -0.26 0.73 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.09 -2.16 5.75 -24.87 -0.14 -2.30 16 12 C 0.03 0.62 5.33 -1.90 -0.01 0.61 16 13 N -0.51 -9.74 5.11 -222.33 -1.14 -10.88 16 14 C 0.04 0.69 1.85 -67.58 -0.12 0.57 16 15 H 0.04 0.73 7.96 -51.93 -0.41 0.31 16 16 C -0.11 -1.55 5.03 -26.55 -0.13 -1.68 16 17 C -0.15 -1.71 6.13 -26.59 -0.16 -1.87 16 18 C 0.06 0.68 6.84 37.20 0.25 0.93 16 19 O -0.39 -5.65 10.77 -35.23 -0.38 -6.03 16 20 C 0.07 1.07 6.07 37.21 0.23 1.29 16 21 C 0.04 0.91 5.26 -2.75 -0.01 0.89 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.06 1.44 8.12 -51.93 -0.42 1.02 16 24 H 0.06 1.57 7.86 -51.93 -0.41 1.16 16 25 H 0.03 0.53 8.02 -51.93 -0.42 0.11 16 26 H 0.06 1.12 7.73 -51.93 -0.40 0.72 16 27 H 0.07 0.90 7.08 -51.93 -0.37 0.53 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 34 H 0.09 1.46 7.44 -51.93 -0.39 1.08 16 35 H 0.07 1.55 7.39 -51.93 -0.38 1.17 16 36 H 0.02 0.42 7.65 -51.93 -0.40 0.03 16 LS Contribution 280.11 15.07 4.22 4.22 Total: -1.00 -28.63 280.11 -8.44 -37.07 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -6.08 Total: -2.34 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -0.75 Total: -13.44 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.44 Total: -35.86 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.38 Total: -6.03 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.63 -8.44 -37.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692040.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.596 kcal (2) G-P(sol) polarization free energy of solvation -28.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds