Wall clock time and date at job start Mon Mar 30 2020 03:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99923 * 2 1 4 4 H 1.48500 * 109.47029 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47126 * 300.00355 * 3 2 1 6 6 H 1.48501 * 109.46859 * 60.00198 * 3 2 1 7 7 C 1.37875 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99718 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99979 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.27378 * 302.08381 * 9 7 2 11 11 C 1.54593 * 110.39572 * 64.23008 * 9 7 2 12 12 C 1.54943 * 102.91873 * 140.91547 * 11 9 7 13 13 N 1.48529 * 103.23110 * 322.58517 * 12 11 9 14 14 C 1.46896 * 111.00073 * 159.72217 * 13 12 11 15 15 H 1.09000 * 109.52039 * 297.60667 * 14 13 12 16 16 C 1.53170 * 109.52187 * 57.73222 * 14 13 12 17 17 C 1.53188 * 109.03109 * 176.82516 * 16 14 13 18 18 C 1.53089 * 109.21559 * 303.11252 * 17 16 14 19 19 O 1.42911 * 109.41170 * 57.57528 * 18 17 16 20 20 C 1.42898 * 114.09847 * 298.84200 * 19 18 17 21 21 C 1.47906 * 105.81645 * 39.20833 * 13 12 11 22 22 H 0.97009 * 119.99859 * 359.97438 * 1 2 3 23 23 H 1.08999 * 110.72465 * 259.27602 * 11 9 7 24 24 H 1.09004 * 110.72424 * 22.38286 * 11 9 7 25 25 H 1.08995 * 110.66363 * 81.02624 * 12 11 9 26 26 H 1.09004 * 110.66081 * 203.98526 * 12 11 9 27 27 H 1.09003 * 109.54535 * 296.75384 * 16 14 13 28 28 H 1.08998 * 109.54810 * 57.02246 * 16 14 13 29 29 H 1.09007 * 109.52705 * 183.17457 * 17 16 14 30 30 H 1.08998 * 109.52313 * 63.05185 * 17 16 14 31 31 H 1.09005 * 109.48170 * 297.59761 * 18 17 16 32 32 H 1.09000 * 109.48408 * 177.55477 * 18 17 16 33 33 H 1.09011 * 109.48050 * 301.17979 * 20 19 18 34 34 H 1.08995 * 109.49334 * 181.15194 * 20 19 18 35 35 H 1.08998 * 109.91583 * 215.31824 * 21 13 12 36 36 H 1.09004 * 109.91554 * 94.02407 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5915 -2.5544 0.8666 11 6 0.4366 -2.6510 -1.3047 12 6 0.6011 -4.1541 -1.6427 13 7 2.0047 -4.4393 -1.2496 14 6 2.2109 -5.8786 -1.0410 15 1 1.5795 -6.2220 -0.2215 16 6 1.8475 -6.6385 -2.3203 17 6 2.1416 -8.1281 -2.1172 18 6 3.6133 -8.3034 -1.7340 19 8 3.8903 -7.5467 -0.5537 20 6 3.6800 -6.1408 -0.6993 21 6 2.2345 -3.6841 0.0012 22 1 -0.4850 0.8401 0.0004 23 1 -0.6120 -2.4061 -1.1357 24 1 0.8544 -2.0271 -2.0949 25 1 -0.0926 -4.7580 -1.0578 26 1 0.4548 -4.3267 -2.7090 27 1 0.7882 -6.5013 -2.5375 28 1 2.4433 -6.2602 -3.1510 29 1 1.9390 -8.6689 -3.0417 30 1 1.5087 -8.5190 -1.3205 31 1 4.2456 -7.9505 -2.5488 32 1 3.8170 -9.3576 -1.5460 33 1 4.3132 -5.7596 -1.5006 34 1 3.9318 -5.6369 0.2338 35 1 3.2599 -3.3155 0.0293 36 1 2.0436 -4.3248 0.8621 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259692040.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:13 Heat of formation + Delta-G solvation = -72.508415 kcal Electronic energy + Delta-G solvation = -16168.857701 eV Core-core repulsion = 13651.455772 eV Total energy + Delta-G solvation = -2517.401929 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.82409 -38.99149 -35.47080 -34.07947 -32.62695 -30.25751 -29.31152 -26.57654 -25.74149 -23.91845 -22.05769 -21.11218 -20.92516 -18.58070 -17.61516 -17.04227 -16.50348 -16.27426 -16.07968 -15.63709 -14.82412 -14.65890 -14.39848 -13.91249 -13.70146 -13.52636 -13.06470 -12.82937 -12.65783 -12.48744 -12.41363 -12.17375 -12.03573 -11.65703 -11.53520 -11.24102 -11.16725 -10.83188 -10.50855 -10.42472 -9.31082 -8.13369 -6.21938 1.40760 1.42630 1.54359 2.43893 2.76491 3.17986 3.27022 3.72651 3.86926 3.99416 4.05984 4.18006 4.26930 4.41383 4.47811 4.49123 4.51611 4.70992 4.77473 4.83592 4.86709 4.97688 5.01874 5.05104 5.15914 5.21394 5.31304 5.37256 5.54265 5.70978 5.84024 6.08144 6.12936 6.33682 6.41034 6.86543 7.45010 8.96659 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.054225 B = 0.006245 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.246735 B = 4482.172287 C = 4795.006116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.029 3.971 10 H -0.002 1.002 11 C -0.085 4.085 12 C 0.046 3.954 13 N -0.513 5.513 14 C 0.043 3.957 15 H 0.033 0.967 16 C -0.113 4.113 17 C -0.147 4.147 18 C 0.051 3.949 19 O -0.400 6.400 20 C 0.076 3.924 21 C 0.056 3.944 22 H 0.260 0.740 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.176 -14.697 -5.175 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.561 4.561 8 H 0.073 0.927 9 C 0.010 3.990 10 H 0.016 0.984 11 C -0.124 4.124 12 C -0.081 4.081 13 N -0.238 5.238 14 C -0.067 4.067 15 H 0.051 0.949 16 C -0.150 4.150 17 C -0.185 4.185 18 C -0.025 4.025 19 O -0.319 6.319 20 C -0.001 4.001 21 C -0.072 4.072 22 H 0.069 0.931 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.131 0.869 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.480 -14.535 -5.401 16.140 hybrid contribution -0.630 1.148 0.689 1.480 sum 3.850 -13.387 -4.712 14.705 Atomic orbital electron populations 1.70096 1.07273 1.27188 1.51579 1.25758 0.95668 1.02459 0.94856 0.85540 0.79136 0.79664 0.77537 1.19077 1.20649 1.20679 1.21530 0.92832 0.91533 1.50250 0.92745 1.19493 0.93020 0.92934 0.93510 0.98398 1.22176 0.98509 0.93370 0.98322 1.23180 0.88408 0.96021 1.00519 1.64727 1.23245 1.06300 1.29544 1.22472 0.97621 0.88475 0.98096 0.94926 1.21656 1.02124 0.95016 0.96238 1.22179 0.97427 0.95568 1.03339 1.22849 0.95187 0.97020 0.87455 1.87906 1.88331 1.18288 1.37351 1.22428 0.94165 0.81486 1.02053 1.22849 1.00330 0.94496 0.89506 0.93084 0.94183 0.94176 0.94449 0.89439 0.91300 0.90930 0.88201 0.91583 0.92280 0.86890 0.92143 0.89816 0.91562 0.95404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.20 12.63 21.45 0.27 -53.93 16 2 C 0.01 0.62 5.34 84.65 0.45 1.07 16 3 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.52 -29.32 8.38 25.60 0.21 -29.11 16 8 H 0.05 3.01 7.34 -2.91 -0.02 2.99 16 9 C 0.03 1.52 2.86 -10.66 -0.03 1.49 16 10 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 11 C -0.08 -4.06 5.75 31.80 0.18 -3.88 16 12 C 0.05 1.73 5.33 86.65 0.46 2.20 16 13 N -0.51 -19.13 5.11 -857.33 -4.38 -23.51 16 14 C 0.04 1.30 1.85 45.00 0.08 1.38 16 15 H 0.03 1.08 7.96 -2.39 -0.02 1.06 16 16 C -0.11 -2.73 5.03 30.71 0.15 -2.57 16 17 C -0.15 -2.75 6.13 30.69 0.19 -2.56 16 18 C 0.05 0.99 6.84 72.01 0.49 1.48 16 19 O -0.40 -10.88 10.77 -148.98 -1.60 -12.49 16 20 C 0.08 2.21 6.07 72.01 0.44 2.65 16 21 C 0.06 2.39 5.26 86.45 0.45 2.84 16 22 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 23 H 0.04 2.01 8.12 -2.39 -0.02 1.99 16 24 H 0.04 2.05 7.86 -2.39 -0.02 2.03 16 25 H 0.04 1.35 8.02 -2.39 -0.02 1.33 16 26 H 0.09 2.90 7.73 -2.39 -0.02 2.88 16 27 H 0.07 1.64 7.08 -2.39 -0.02 1.63 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.08 2.56 7.44 -2.39 -0.02 2.54 16 35 H 0.07 2.89 7.39 -2.39 -0.02 2.87 16 36 H 0.03 1.13 7.65 -2.38 -0.02 1.11 16 Total: -1.00 -61.64 280.11 0.43 -61.21 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.03 Total: 7.48 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 3.09 Total: -25.01 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -4.11 Total: -77.43 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -1.60 Total: -12.49 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -61.64 0.43 -61.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692040.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.303 kcal (2) G-P(sol) polarization free energy of solvation -61.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds