Wall clock time and date at job start Mon Mar 30 2020 03:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99746 * 2 1 4 4 H 1.48500 * 109.47094 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47209 * 299.99781 * 3 2 1 6 6 H 1.48500 * 109.47096 * 59.99991 * 3 2 1 7 7 C 1.37882 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99758 * 0.02562 * 7 2 1 10 10 H 1.08991 * 110.27680 * 302.09162 * 9 7 2 11 11 C 1.54603 * 110.38760 * 64.23861 * 9 7 2 12 12 C 1.54936 * 102.91701 * 140.91580 * 11 9 7 13 13 N 1.48537 * 103.22973 * 322.58115 * 12 11 9 14 14 C 1.46901 * 111.00144 * 159.72567 * 13 12 11 15 15 H 1.08999 * 109.51762 * 299.03373 * 14 13 12 16 16 C 1.53175 * 109.57424 * 178.87682 * 14 13 12 17 17 C 1.53171 * 109.03624 * 183.08069 * 16 14 13 18 18 C 1.53101 * 109.16354 * 56.97976 * 17 16 14 19 19 O 1.42897 * 109.41357 * 302.38903 * 18 17 16 20 20 C 1.42906 * 114.09841 * 61.15978 * 19 18 17 21 21 C 1.47903 * 105.81624 * 39.20896 * 13 12 11 22 22 H 0.96998 * 120.00075 * 0.02562 * 1 2 3 23 23 H 1.09005 * 110.72109 * 259.26872 * 11 9 7 24 24 H 1.08996 * 110.72839 * 22.55446 * 11 9 7 25 25 H 1.09006 * 110.66749 * 204.14789 * 12 11 9 26 26 H 1.08999 * 110.67540 * 81.01884 * 12 11 9 27 27 H 1.09000 * 109.53858 * 302.94717 * 16 14 13 28 28 H 1.09002 * 109.54362 * 63.11982 * 16 14 13 29 29 H 1.08998 * 109.52332 * 176.88518 * 17 16 14 30 30 H 1.09000 * 109.52511 * 297.07247 * 17 16 14 31 31 H 1.09004 * 109.48104 * 182.40550 * 18 17 16 32 32 H 1.08996 * 109.47600 * 62.37242 * 18 17 16 33 33 H 1.08996 * 109.48166 * 58.82153 * 20 19 18 34 34 H 1.09001 * 109.48473 * 178.85640 * 20 19 18 35 35 H 1.09000 * 109.91154 * 94.02997 * 21 13 12 36 36 H 1.09003 * 109.91427 * 215.11940 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5915 -2.5545 0.8664 11 6 0.4368 -2.6510 -1.3049 12 6 0.6014 -4.1540 -1.6429 13 7 2.0050 -4.4392 -1.2496 14 6 2.2112 -5.8787 -1.0410 15 1 1.5611 -6.2271 -0.2385 16 6 3.6732 -6.1385 -0.6649 17 6 3.8926 -7.6480 -0.5258 18 6 3.4986 -8.3359 -1.8356 19 8 2.1374 -8.0283 -2.1428 20 6 1.8821 -6.6349 -2.3309 21 6 2.2346 -3.6841 0.0012 22 1 -0.4850 0.8400 -0.0004 23 1 -0.6118 -2.4061 -1.1360 24 1 0.8566 -2.0295 -2.0959 25 1 0.4581 -4.3264 -2.7097 26 1 -0.0923 -4.7582 -1.0581 27 1 4.3256 -5.7454 -1.4446 28 1 3.8990 -5.6470 0.2815 29 1 4.9431 -7.8452 -0.3125 30 1 3.2765 -8.0323 0.2872 31 1 3.6122 -9.4146 -1.7281 32 1 4.1421 -7.9808 -2.6404 33 1 2.5045 -6.2576 -3.1423 34 1 0.8312 -6.4881 -2.5802 35 1 2.0436 -4.3248 0.8620 36 1 3.2611 -3.3185 0.0311 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259692043.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:15 Heat of formation + Delta-G solvation = -53.755964 kcal Electronic energy + Delta-G solvation = -16168.034623 eV Core-core repulsion = 13651.445861 eV Total energy + Delta-G solvation = -2516.588762 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.57229 -37.51558 -33.81503 -32.66497 -31.11304 -28.35341 -27.97294 -25.09968 -24.00646 -22.81737 -20.48266 -19.80964 -19.16166 -16.51181 -16.39277 -15.96069 -15.09119 -14.74135 -14.47962 -13.92988 -13.86192 -13.24788 -12.77220 -12.54955 -12.03872 -11.86820 -11.76602 -11.12683 -11.02688 -10.96533 -10.79919 -10.66331 -10.47796 -10.15951 -10.11261 -9.66953 -9.40372 -9.21001 -8.77203 -8.39697 -7.74785 -6.00195 -4.01888 3.31148 3.39209 3.43459 3.87318 4.45681 4.57994 4.90170 4.92712 4.99785 5.17653 5.32224 5.34806 5.50869 5.64636 5.77551 5.81456 5.88546 5.94378 6.00846 6.09542 6.19366 6.25750 6.31470 6.43271 6.56857 6.87767 7.13242 7.17556 7.21382 7.45494 7.65495 7.80035 7.91430 8.03294 8.45373 8.99829 9.61553 11.10042 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.054667 B = 0.006224 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.069573 B = 4497.869958 C = 4798.731997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.506 4.506 8 H 0.057 0.943 9 C 0.039 3.961 10 H 0.029 0.971 11 C -0.091 4.091 12 C 0.026 3.974 13 N -0.509 5.509 14 C 0.043 3.957 15 H 0.042 0.958 16 C -0.114 4.114 17 C -0.154 4.154 18 C 0.060 3.940 19 O -0.387 6.387 20 C 0.069 3.931 21 C 0.048 3.952 22 H 0.259 0.741 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.019 0.981 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 -12.979 -2.796 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.130 4.130 12 C -0.101 4.101 13 N -0.235 5.235 14 C -0.066 4.066 15 H 0.060 0.940 16 C -0.152 4.152 17 C -0.192 4.192 18 C -0.017 4.017 19 O -0.304 6.304 20 C -0.008 4.008 21 C -0.079 4.079 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.037 0.963 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.934 -12.857 -3.216 14.142 hybrid contribution 0.063 0.910 0.750 1.181 sum 4.998 -11.947 -2.467 13.183 Atomic orbital electron populations 1.69976 1.05904 1.26351 1.50808 1.24984 0.94842 0.99068 0.95204 0.86559 0.80190 0.83913 0.77483 1.19784 1.21074 1.21156 1.21206 0.92737 0.90145 1.50320 0.92456 1.19503 0.92520 0.91970 0.94014 0.95248 1.22405 1.00290 0.90435 0.99852 1.23384 0.88196 0.99539 0.99019 1.64772 1.23294 1.04254 1.31157 1.22379 0.96655 0.90525 0.97089 0.93963 1.21613 0.96207 0.94766 1.02582 1.22205 1.01818 0.96440 0.98776 1.22561 0.83574 0.99832 0.95721 1.87909 1.27089 1.24423 1.91024 1.22617 1.01656 0.80244 0.96280 1.23060 1.01742 0.95261 0.87826 0.93157 0.92252 0.91953 0.91728 0.95152 0.91037 0.91326 0.90933 0.91342 0.89285 0.93219 0.92348 0.88994 0.96283 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 12.63 55.43 0.70 -24.97 16 2 C 0.06 1.68 5.34 -17.82 -0.10 1.58 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -13.90 8.38 -34.44 -0.29 -14.19 16 8 H 0.06 1.57 7.35 -52.49 -0.39 1.18 16 9 C 0.04 0.98 2.87 -90.41 -0.26 0.72 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.09 -2.14 5.75 -24.87 -0.14 -2.28 16 12 C 0.03 0.50 5.39 -1.90 -0.01 0.49 16 13 N -0.51 -9.75 5.11 -222.33 -1.14 -10.88 16 14 C 0.04 0.69 1.83 -67.57 -0.12 0.57 16 15 H 0.04 0.73 7.98 -51.93 -0.41 0.31 16 16 C -0.11 -1.61 5.22 -26.55 -0.14 -1.75 16 17 C -0.15 -1.76 6.14 -26.59 -0.16 -1.92 16 18 C 0.06 0.68 6.84 37.21 0.25 0.93 16 19 O -0.39 -5.52 10.77 -35.23 -0.38 -5.90 16 20 C 0.07 1.01 5.90 37.21 0.22 1.23 16 21 C 0.05 1.03 5.21 -2.76 -0.01 1.01 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.06 1.45 8.12 -51.93 -0.42 1.03 16 24 H 0.06 1.57 7.86 -51.93 -0.41 1.16 16 25 H 0.06 1.13 7.72 -51.93 -0.40 0.73 16 26 H 0.03 0.56 8.01 -51.93 -0.42 0.15 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.01 7.40 -51.93 -0.38 0.62 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.32 7.06 -51.93 -0.37 0.95 16 35 H 0.02 0.38 7.64 -51.93 -0.40 -0.01 16 36 H 0.07 1.54 7.40 -51.93 -0.38 1.15 16 LS Contribution 280.07 15.07 4.22 4.22 Total: -1.00 -28.64 280.07 -8.45 -37.09 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -6.07 Total: -2.31 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -0.76 Total: -13.60 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.44 Total: -35.85 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.38 Total: -5.90 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.64 -8.45 -37.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692043.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.668 kcal (2) G-P(sol) polarization free energy of solvation -28.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds