Wall clock time and date at job start Mon Mar 30 2020 03:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99746 * 2 1 4 4 H 1.48500 * 109.47094 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47209 * 299.99781 * 3 2 1 6 6 H 1.48500 * 109.47096 * 59.99991 * 3 2 1 7 7 C 1.37882 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99758 * 0.02562 * 7 2 1 10 10 H 1.08991 * 110.27680 * 302.09162 * 9 7 2 11 11 C 1.54603 * 110.38760 * 64.23861 * 9 7 2 12 12 C 1.54936 * 102.91701 * 140.91580 * 11 9 7 13 13 N 1.48537 * 103.22973 * 322.58115 * 12 11 9 14 14 C 1.46901 * 111.00144 * 159.72567 * 13 12 11 15 15 H 1.08999 * 109.51762 * 299.03373 * 14 13 12 16 16 C 1.53175 * 109.57424 * 178.87682 * 14 13 12 17 17 C 1.53171 * 109.03624 * 183.08069 * 16 14 13 18 18 C 1.53101 * 109.16354 * 56.97976 * 17 16 14 19 19 O 1.42897 * 109.41357 * 302.38903 * 18 17 16 20 20 C 1.42906 * 114.09841 * 61.15978 * 19 18 17 21 21 C 1.47903 * 105.81624 * 39.20896 * 13 12 11 22 22 H 0.96998 * 120.00075 * 0.02562 * 1 2 3 23 23 H 1.09005 * 110.72109 * 259.26872 * 11 9 7 24 24 H 1.08996 * 110.72839 * 22.55446 * 11 9 7 25 25 H 1.09006 * 110.66749 * 204.14789 * 12 11 9 26 26 H 1.08999 * 110.67540 * 81.01884 * 12 11 9 27 27 H 1.09000 * 109.53858 * 302.94717 * 16 14 13 28 28 H 1.09002 * 109.54362 * 63.11982 * 16 14 13 29 29 H 1.08998 * 109.52332 * 176.88518 * 17 16 14 30 30 H 1.09000 * 109.52511 * 297.07247 * 17 16 14 31 31 H 1.09004 * 109.48104 * 182.40550 * 18 17 16 32 32 H 1.08996 * 109.47600 * 62.37242 * 18 17 16 33 33 H 1.08996 * 109.48166 * 58.82153 * 20 19 18 34 34 H 1.09001 * 109.48473 * 178.85640 * 20 19 18 35 35 H 1.09000 * 109.91154 * 94.02997 * 21 13 12 36 36 H 1.09003 * 109.91427 * 215.11940 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5915 -2.5545 0.8664 11 6 0.4368 -2.6510 -1.3049 12 6 0.6014 -4.1540 -1.6429 13 7 2.0050 -4.4392 -1.2496 14 6 2.2112 -5.8787 -1.0410 15 1 1.5611 -6.2271 -0.2385 16 6 3.6732 -6.1385 -0.6649 17 6 3.8926 -7.6480 -0.5258 18 6 3.4986 -8.3359 -1.8356 19 8 2.1374 -8.0283 -2.1428 20 6 1.8821 -6.6349 -2.3309 21 6 2.2346 -3.6841 0.0012 22 1 -0.4850 0.8400 -0.0004 23 1 -0.6118 -2.4061 -1.1360 24 1 0.8566 -2.0295 -2.0959 25 1 0.4581 -4.3264 -2.7097 26 1 -0.0923 -4.7582 -1.0581 27 1 4.3256 -5.7454 -1.4446 28 1 3.8990 -5.6470 0.2815 29 1 4.9431 -7.8452 -0.3125 30 1 3.2765 -8.0323 0.2872 31 1 3.6122 -9.4146 -1.7281 32 1 4.1421 -7.9808 -2.6404 33 1 2.5045 -6.2576 -3.1423 34 1 0.8312 -6.4881 -2.5802 35 1 2.0436 -4.3248 0.8620 36 1 3.2611 -3.3185 0.0311 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259692043.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:14 Heat of formation + Delta-G solvation = -72.575438 kcal Electronic energy + Delta-G solvation = -16168.850696 eV Core-core repulsion = 13651.445861 eV Total energy + Delta-G solvation = -2517.404835 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.82563 -38.98977 -35.44284 -34.14683 -32.61097 -30.09421 -29.49951 -26.62751 -25.56138 -24.06682 -21.88865 -21.36324 -20.80094 -18.56679 -17.61590 -17.11478 -16.54135 -16.30283 -16.00558 -15.36143 -15.12186 -14.63347 -14.46409 -13.73266 -13.67220 -13.50171 -13.21343 -12.95504 -12.63055 -12.48584 -12.32440 -12.19525 -12.04195 -11.61248 -11.51149 -11.25928 -11.21314 -10.84017 -10.51423 -10.41371 -9.31303 -8.13554 -6.22230 1.40503 1.42366 1.53983 2.43585 2.77228 3.17545 3.26296 3.73122 3.86354 3.98883 4.04982 4.18040 4.27284 4.38717 4.47659 4.49338 4.53249 4.71371 4.75937 4.82224 4.87633 4.97610 4.99898 5.05111 5.16664 5.21682 5.31867 5.35803 5.53911 5.70920 5.83811 6.07967 6.12535 6.33972 6.40320 6.86218 7.44690 8.96482 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.054667 B = 0.006224 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.069573 B = 4497.869958 C = 4798.731997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.029 3.971 10 H -0.002 1.002 11 C -0.084 4.084 12 C 0.039 3.961 13 N -0.513 5.513 14 C 0.042 3.958 15 H 0.033 0.967 16 C -0.114 4.114 17 C -0.147 4.147 18 C 0.053 3.947 19 O -0.399 6.399 20 C 0.076 3.924 21 C 0.063 3.937 22 H 0.260 0.740 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.089 0.911 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.026 0.974 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.138 -14.172 -3.400 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.561 4.561 8 H 0.072 0.928 9 C 0.010 3.990 10 H 0.016 0.984 11 C -0.123 4.123 12 C -0.089 4.089 13 N -0.238 5.238 14 C -0.067 4.067 15 H 0.051 0.949 16 C -0.151 4.151 17 C -0.185 4.185 18 C -0.023 4.023 19 O -0.317 6.317 20 C -0.001 4.001 21 C -0.065 4.065 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.107 0.893 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.044 0.956 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.228 -14.070 -3.821 15.853 hybrid contribution -0.333 1.240 0.963 1.605 sum 5.895 -12.830 -2.858 14.405 Atomic orbital electron populations 1.70093 1.07273 1.27207 1.51537 1.25761 0.95668 1.02464 0.94850 0.85538 0.79117 0.79659 0.77550 1.19087 1.20647 1.20661 1.21519 0.92795 0.91529 1.50298 0.92795 1.19500 0.93043 0.92967 0.93518 0.98393 1.22172 0.98533 0.93286 0.98308 1.23271 0.88654 0.96297 1.00652 1.64750 1.22962 1.06308 1.29794 1.22482 0.97935 0.88376 0.97910 0.94930 1.21620 0.94631 0.96953 1.01940 1.22177 1.03380 0.94043 0.98901 1.22824 0.82284 1.01398 0.95791 1.87902 1.29006 1.23684 1.91100 1.22498 1.01885 0.80556 0.95202 1.22762 1.00128 0.94270 0.89331 0.93070 0.94142 0.94143 0.89277 0.94299 0.91132 0.92292 0.88468 0.91606 0.86804 0.92226 0.91980 0.88881 0.95561 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.16 12.63 21.45 0.27 -53.89 16 2 C 0.01 0.62 5.34 84.66 0.45 1.07 16 3 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.52 -29.29 8.38 25.60 0.21 -29.08 16 8 H 0.05 2.98 7.35 -2.92 -0.02 2.96 16 9 C 0.03 1.48 2.87 -10.66 -0.03 1.45 16 10 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 11 C -0.08 -4.03 5.75 31.80 0.18 -3.85 16 12 C 0.04 1.46 5.39 86.65 0.47 1.93 16 13 N -0.51 -19.15 5.11 -857.32 -4.38 -23.53 16 14 C 0.04 1.29 1.83 45.01 0.08 1.37 16 15 H 0.03 1.08 7.98 -2.39 -0.02 1.06 16 16 C -0.11 -2.99 5.22 30.71 0.16 -2.83 16 17 C -0.15 -2.92 6.14 30.69 0.19 -2.73 16 18 C 0.05 1.02 6.84 72.02 0.49 1.52 16 19 O -0.40 -10.32 10.77 -148.98 -1.60 -11.93 16 20 C 0.08 2.05 5.90 72.01 0.42 2.47 16 21 C 0.06 2.68 5.21 86.44 0.45 3.13 16 22 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 23 H 0.04 2.04 8.12 -2.38 -0.02 2.02 16 24 H 0.04 2.07 7.86 -2.39 -0.02 2.05 16 25 H 0.09 2.95 7.72 -2.38 -0.02 2.93 16 26 H 0.04 1.41 8.01 -2.39 -0.02 1.39 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.06 1.65 7.40 -2.39 -0.02 1.64 16 29 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.11 1.65 8.14 -2.38 -0.02 1.64 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 2.46 7.06 -2.39 -0.02 2.45 16 35 H 0.03 1.06 7.64 -2.39 -0.02 1.05 16 36 H 0.06 2.81 7.40 -2.39 -0.02 2.79 16 Total: -1.00 -61.50 280.07 0.42 -61.08 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.03 Total: 7.66 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 3.09 Total: -25.55 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -4.11 Total: -77.43 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -1.60 Total: -11.93 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -61.50 0.42 -61.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692043.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.499 kcal (2) G-P(sol) polarization free energy of solvation -61.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds