Wall clock time and date at job start Mon Mar 30 2020 03:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00099 * 2 1 4 4 H 1.48500 * 109.47247 * 270.00314 * 3 2 1 5 5 H 1.48504 * 109.47014 * 29.99719 * 3 2 1 6 6 H 1.48492 * 109.47295 * 149.99954 * 3 2 1 7 7 C 1.37874 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99871 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.45516 * 305.41477 * 9 7 2 11 11 C 1.53040 * 109.46186 * 65.38669 * 9 7 2 12 12 C 1.53126 * 109.27655 * 179.19385 * 11 9 7 13 13 C 1.53114 * 109.15979 * 302.34711 * 12 11 9 14 14 C 1.53039 * 109.27906 * 57.65757 * 13 12 11 15 15 N 1.46844 * 109.52399 * 300.81506 * 14 13 12 16 16 C 1.46897 * 111.00115 * 185.83911 * 15 14 13 17 17 H 1.09003 * 110.98620 * 189.11025 * 16 15 14 18 18 C 1.55303 * 111.16358 * 313.33640 * 16 15 14 19 19 C 1.54385 * 102.25358 * 152.06636 * 18 16 15 20 20 O 1.43239 * 107.58756 * 338.64605 * 19 18 16 21 21 C 1.43644 * 109.97065 * 358.28872 * 20 19 18 22 22 H 0.97010 * 120.00198 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.49957 * 59.25657 * 11 9 7 24 24 H 1.08995 * 109.50373 * 299.13877 * 11 9 7 25 25 H 1.08995 * 109.51937 * 182.44399 * 12 11 9 26 26 H 1.08995 * 109.56960 * 62.28565 * 12 11 9 27 27 H 1.09001 * 109.50923 * 297.71101 * 13 12 11 28 28 H 1.09000 * 109.49986 * 177.59563 * 13 12 11 29 29 H 1.08998 * 109.46181 * 180.80088 * 14 13 12 30 30 H 1.08998 * 109.46157 * 60.83692 * 14 13 12 31 31 H 1.09004 * 110.84715 * 33.87576 * 18 16 15 32 32 H 1.09001 * 110.84833 * 270.25725 * 18 16 15 33 33 H 1.08992 * 109.82890 * 219.13144 * 19 18 16 34 34 H 1.08998 * 109.82539 * 98.15512 * 19 18 16 35 35 H 1.09004 * 110.30979 * 143.34496 * 21 20 19 36 36 H 1.09003 * 110.30912 * 265.41350 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.5540 -2.5152 0.8396 11 6 0.4751 -2.6411 -1.3098 12 6 -0.2726 -3.9773 -1.3126 13 6 0.7332 -5.1165 -1.1255 14 6 1.5016 -4.9027 0.1806 15 7 2.2001 -3.6119 0.1334 16 6 3.0589 -3.4347 1.3120 17 1 3.4512 -2.4188 1.3599 18 6 2.3032 -3.8051 2.6172 19 6 3.4523 -4.2559 3.5444 20 8 4.5613 -4.6196 2.7140 21 6 4.2050 -4.4773 1.3297 22 1 -0.4851 0.8401 -0.0004 23 1 1.1702 -2.6113 -2.1488 24 1 -0.2401 -1.8236 -1.3997 25 1 -0.7918 -4.1022 -2.2628 26 1 -0.9961 -3.9926 -0.4975 27 1 1.4324 -5.1257 -1.9617 28 1 0.2023 -6.0675 -1.0839 29 1 2.2286 -5.7045 0.3097 30 1 0.8034 -4.9076 1.0176 31 1 1.6032 -4.6219 2.4417 32 1 1.7910 -2.9355 3.0290 33 1 3.1352 -5.1153 4.1351 34 1 3.7377 -3.4368 4.2046 35 1 5.0568 -4.1130 0.7553 36 1 3.8583 -5.4296 0.9284 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259792592.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:17 Heat of formation + Delta-G solvation = -46.376007 kcal Electronic energy + Delta-G solvation = -16756.831496 eV Core-core repulsion = 14240.562753 eV Total energy + Delta-G solvation = -2516.268743 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.52462 -37.31867 -33.04455 -32.95252 -29.85152 -29.58426 -27.90467 -25.22043 -23.34223 -21.92751 -21.39223 -19.97772 -18.38793 -16.58932 -16.25852 -15.64512 -14.82785 -14.41177 -13.93893 -13.66120 -13.42192 -13.20805 -12.98488 -12.45700 -12.11189 -11.93398 -11.38966 -11.05257 -10.95328 -10.79220 -10.70559 -10.61359 -10.23656 -10.07863 -9.94238 -9.67705 -9.40828 -9.00141 -8.81220 -8.43325 -7.21953 -6.06891 -4.10706 3.28114 3.35029 3.38111 4.26026 4.37884 4.77721 5.22588 5.25199 5.36381 5.42580 5.55411 5.65446 5.67584 5.73576 5.89618 6.07945 6.11803 6.18983 6.26869 6.33294 6.37639 6.50702 6.53192 6.72252 6.79838 6.85774 7.07669 7.21518 7.32855 7.50177 7.66414 7.78668 8.10805 8.25208 8.54864 8.96630 9.54496 11.00761 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.021641 B = 0.011877 C = 0.008515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.507778 B = 2357.010319 C = 3287.388912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.063 0.937 9 C 0.220 3.780 10 H 0.005 0.995 11 C -0.102 4.102 12 C -0.123 4.123 13 C -0.111 4.111 14 C 0.049 3.951 15 N -0.520 5.520 16 C 0.067 3.933 17 H 0.114 0.886 18 C -0.193 4.193 19 C 0.056 3.944 20 O -0.393 6.393 21 C 0.052 3.948 22 H 0.261 0.739 23 H 0.044 0.956 24 H 0.084 0.916 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 -7.739 2.004 8.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.115 3.885 10 H 0.023 0.977 11 C -0.140 4.140 12 C -0.161 4.161 13 C -0.149 4.149 14 C -0.079 4.079 15 N -0.244 5.244 16 C -0.043 4.043 17 H 0.132 0.868 18 C -0.232 4.232 19 C -0.021 4.021 20 O -0.312 6.312 21 C -0.025 4.025 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.503 -7.672 1.655 8.237 hybrid contribution -0.454 0.990 0.653 1.270 sum 2.048 -6.682 2.308 7.360 Atomic orbital electron populations 1.69920 1.05884 1.26624 1.50534 1.24922 0.94846 0.99088 0.95125 0.86569 0.79808 0.83310 0.78182 1.20625 1.21349 1.19870 1.21140 0.93235 0.89759 1.50582 0.91888 1.19204 0.89046 0.86938 0.93348 0.97726 1.21604 0.98808 0.94664 0.98944 1.21687 0.97540 0.97085 0.99780 1.21539 0.97973 0.97495 0.97880 1.22138 0.96141 0.93083 0.96558 1.62034 1.23793 1.02472 1.36106 1.23352 0.92900 1.00525 0.87547 0.86835 1.23776 0.98759 1.02438 0.98239 1.22970 0.86694 0.98849 0.93542 1.88339 1.37001 1.88913 1.16921 1.23488 0.98391 0.98577 0.82011 0.92939 0.93682 0.89740 0.93676 0.93359 0.91821 0.93212 0.92232 0.95506 0.90638 0.89905 0.92428 0.91728 0.89804 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.74 11.73 55.43 0.65 -24.09 16 2 C 0.06 1.66 5.33 -17.82 -0.09 1.57 16 3 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -13.39 7.55 -34.44 -0.26 -13.65 16 8 H 0.06 1.67 6.62 -52.49 -0.35 1.32 16 9 C 0.22 5.31 1.58 -68.87 -0.11 5.20 16 10 H 0.01 0.14 7.94 -51.93 -0.41 -0.28 16 11 C -0.10 -2.35 5.19 -26.65 -0.14 -2.49 16 12 C -0.12 -2.36 6.00 -26.61 -0.16 -2.52 16 13 C -0.11 -1.89 6.09 -26.65 -0.16 -2.05 16 14 C 0.05 0.88 4.51 -3.83 -0.02 0.86 16 15 N -0.52 -10.75 4.50 -217.47 -0.98 -11.73 16 16 C 0.07 1.29 2.87 -65.47 -0.19 1.10 16 17 H 0.11 2.46 5.98 -51.93 -0.31 2.15 16 18 C -0.19 -3.36 5.98 -24.78 -0.15 -3.51 16 19 C 0.06 0.88 7.79 37.88 0.30 1.18 16 20 O -0.39 -6.86 11.36 -35.23 -0.40 -7.26 16 21 C 0.05 0.89 7.33 38.18 0.28 1.17 16 22 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 23 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.08 2.17 6.53 -51.93 -0.34 1.83 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.97 6.08 -51.93 -0.32 0.65 16 30 H 0.03 0.49 6.18 -51.93 -0.32 0.17 16 31 H 0.08 1.28 5.46 -51.93 -0.28 0.99 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.06 0.94 6.04 -51.93 -0.31 0.63 16 LS Contribution 271.11 15.07 4.09 4.09 Total: -1.00 -27.21 271.11 -7.95 -35.16 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.58 Total: 1.10 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -0.70 Total: -13.15 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.33 Total: -35.82 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.40 Total: -7.26 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.21 -7.95 -35.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259792592.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.219 kcal (2) G-P(sol) polarization free energy of solvation -27.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds