Wall clock time and date at job start Mon Mar 30 2020 03:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00099 * 2 1 4 4 H 1.48500 * 109.47247 * 270.00314 * 3 2 1 5 5 H 1.48504 * 109.47014 * 29.99719 * 3 2 1 6 6 H 1.48492 * 109.47295 * 149.99954 * 3 2 1 7 7 C 1.37874 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99871 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.45516 * 305.41477 * 9 7 2 11 11 C 1.53040 * 109.46186 * 65.38669 * 9 7 2 12 12 C 1.53126 * 109.27655 * 179.19385 * 11 9 7 13 13 C 1.53114 * 109.15979 * 302.34711 * 12 11 9 14 14 C 1.53039 * 109.27906 * 57.65757 * 13 12 11 15 15 N 1.46844 * 109.52399 * 300.81506 * 14 13 12 16 16 C 1.46897 * 111.00115 * 185.83911 * 15 14 13 17 17 H 1.09003 * 110.98620 * 189.11025 * 16 15 14 18 18 C 1.55303 * 111.16358 * 313.33640 * 16 15 14 19 19 C 1.54385 * 102.25358 * 152.06636 * 18 16 15 20 20 O 1.43239 * 107.58756 * 338.64605 * 19 18 16 21 21 C 1.43644 * 109.97065 * 358.28872 * 20 19 18 22 22 H 0.97010 * 120.00198 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.49957 * 59.25657 * 11 9 7 24 24 H 1.08995 * 109.50373 * 299.13877 * 11 9 7 25 25 H 1.08995 * 109.51937 * 182.44399 * 12 11 9 26 26 H 1.08995 * 109.56960 * 62.28565 * 12 11 9 27 27 H 1.09001 * 109.50923 * 297.71101 * 13 12 11 28 28 H 1.09000 * 109.49986 * 177.59563 * 13 12 11 29 29 H 1.08998 * 109.46181 * 180.80088 * 14 13 12 30 30 H 1.08998 * 109.46157 * 60.83692 * 14 13 12 31 31 H 1.09004 * 110.84715 * 33.87576 * 18 16 15 32 32 H 1.09001 * 110.84833 * 270.25725 * 18 16 15 33 33 H 1.08992 * 109.82890 * 219.13144 * 19 18 16 34 34 H 1.08998 * 109.82539 * 98.15512 * 19 18 16 35 35 H 1.09004 * 110.30979 * 143.34496 * 21 20 19 36 36 H 1.09003 * 110.30912 * 265.41350 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.5540 -2.5152 0.8396 11 6 0.4751 -2.6411 -1.3098 12 6 -0.2726 -3.9773 -1.3126 13 6 0.7332 -5.1165 -1.1255 14 6 1.5016 -4.9027 0.1806 15 7 2.2001 -3.6119 0.1334 16 6 3.0589 -3.4347 1.3120 17 1 3.4512 -2.4188 1.3599 18 6 2.3032 -3.8051 2.6172 19 6 3.4523 -4.2559 3.5444 20 8 4.5613 -4.6196 2.7140 21 6 4.2050 -4.4773 1.3297 22 1 -0.4851 0.8401 -0.0004 23 1 1.1702 -2.6113 -2.1488 24 1 -0.2401 -1.8236 -1.3997 25 1 -0.7918 -4.1022 -2.2628 26 1 -0.9961 -3.9926 -0.4975 27 1 1.4324 -5.1257 -1.9617 28 1 0.2023 -6.0675 -1.0839 29 1 2.2286 -5.7045 0.3097 30 1 0.8034 -4.9076 1.0176 31 1 1.6032 -4.6219 2.4417 32 1 1.7910 -2.9355 3.0290 33 1 3.1352 -5.1153 4.1351 34 1 3.7377 -3.4368 4.2046 35 1 5.0568 -4.1130 0.7553 36 1 3.8583 -5.4296 0.9284 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259792592.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:17 Heat of formation + Delta-G solvation = -63.951567 kcal Electronic energy + Delta-G solvation = -16757.593630 eV Core-core repulsion = 14240.562753 eV Total energy + Delta-G solvation = -2517.030876 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.00817 -38.85080 -34.93039 -34.55617 -31.49555 -31.14850 -29.35056 -27.15231 -24.90165 -23.29653 -23.09425 -21.54264 -20.02908 -18.44034 -17.78396 -17.16517 -16.63441 -15.83423 -15.54536 -15.13740 -15.06406 -14.73730 -14.50796 -14.13080 -13.79482 -13.52202 -12.96752 -12.84649 -12.62687 -12.47400 -12.29767 -12.09993 -11.94440 -11.84530 -11.52037 -11.38390 -10.96612 -10.74566 -10.41979 -10.36907 -8.88990 -8.12920 -6.22662 1.39747 1.41347 1.50469 2.40706 2.90505 3.16272 3.25864 3.81321 3.98517 4.06231 4.12609 4.23767 4.26152 4.32541 4.43712 4.64065 4.74635 4.81728 4.85063 4.85717 4.93360 5.05799 5.06162 5.19316 5.22258 5.24837 5.38858 5.46000 5.64187 5.73516 5.80129 5.99341 6.26545 6.40288 6.76478 6.93350 7.46089 8.93759 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.021641 B = 0.011877 C = 0.008515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.507778 B = 2357.010319 C = 3287.388912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.016 3.984 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.230 3.770 10 H -0.032 1.032 11 C -0.098 4.098 12 C -0.118 4.118 13 C -0.105 4.105 14 C 0.046 3.954 15 N -0.525 5.525 16 C 0.058 3.942 17 H 0.082 0.918 18 C -0.187 4.187 19 C 0.060 3.940 20 O -0.402 6.402 21 C 0.063 3.937 22 H 0.260 0.740 23 H 0.035 0.965 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.023 0.977 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.921 -9.373 2.071 10.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.558 4.558 8 H 0.074 0.926 9 C 0.123 3.877 10 H -0.015 1.015 11 C -0.136 4.136 12 C -0.156 4.156 13 C -0.143 4.143 14 C -0.082 4.082 15 N -0.249 5.249 16 C -0.052 4.052 17 H 0.100 0.900 18 C -0.226 4.226 19 C -0.017 4.017 20 O -0.321 6.321 21 C -0.013 4.013 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.041 0.959 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.265 -9.320 1.727 10.025 hybrid contribution -0.689 1.490 0.654 1.767 sum 2.576 -7.830 2.382 8.580 Atomic orbital electron populations 1.70043 1.07079 1.27183 1.51484 1.25630 0.95580 1.02110 0.95033 0.85651 0.78711 0.79668 0.78198 1.20227 1.21089 1.19425 1.21425 0.93080 0.91239 1.50053 0.92606 1.18922 0.88804 0.87643 0.92347 1.01475 1.21435 0.98105 0.96182 0.97912 1.21612 0.97717 0.95610 1.00626 1.21537 0.97478 0.97968 0.97308 1.22286 0.96709 0.92044 0.97127 1.61977 1.23170 1.02682 1.37087 1.23291 0.93889 0.99855 0.88129 0.90028 1.23685 0.99351 1.01879 0.97721 1.23057 0.85343 1.00264 0.93008 1.88327 1.37716 1.89006 1.17034 1.23400 0.97449 0.98267 0.82213 0.93047 0.94625 0.93053 0.91705 0.94053 0.91518 0.89615 0.89656 0.95851 0.89823 0.91957 0.89709 0.91043 0.89339 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.58 11.73 21.45 0.25 -52.33 16 2 C 0.02 0.85 5.33 84.65 0.45 1.30 16 3 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.52 -28.14 7.55 25.60 0.19 -27.94 16 8 H 0.06 3.04 6.62 -2.91 -0.02 3.02 16 9 C 0.23 11.33 1.58 44.19 0.07 11.40 16 10 H -0.03 -1.81 7.94 -2.38 -0.02 -1.82 16 11 C -0.10 -4.60 5.19 30.65 0.16 -4.44 16 12 C -0.12 -4.37 6.00 30.67 0.18 -4.19 16 13 C -0.11 -3.27 6.09 30.65 0.19 -3.08 16 14 C 0.05 1.54 4.51 86.33 0.39 1.93 16 15 N -0.53 -21.47 4.50 -841.95 -3.79 -25.26 16 16 C 0.06 2.23 2.87 46.37 0.13 2.36 16 17 H 0.08 3.63 5.98 -2.39 -0.01 3.61 16 18 C -0.19 -6.39 5.98 31.86 0.19 -6.20 16 19 C 0.06 1.74 7.79 72.45 0.56 2.30 16 20 O -0.40 -13.05 11.36 -148.98 -1.69 -14.74 16 21 C 0.06 2.03 7.33 72.65 0.53 2.56 16 22 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 23 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.05 2.73 6.53 -2.39 -0.02 2.72 16 25 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.09 2.45 6.08 -2.39 -0.01 2.43 16 30 H 0.02 0.81 6.18 -2.39 -0.01 0.80 16 31 H 0.08 2.71 5.46 -2.39 -0.01 2.69 16 32 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.07 2.15 6.04 -2.39 -0.01 2.13 16 Total: -1.00 -59.26 271.11 0.90 -58.36 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 1.05 Total: 12.32 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 3.05 Total: -24.00 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -3.53 Total: -77.59 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -1.69 Total: -14.74 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -59.26 0.90 -58.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259792592.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.595 kcal (2) G-P(sol) polarization free energy of solvation -59.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds