Wall clock time and date at job start Mon Mar 30 2020 03:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00125 * 2 1 4 4 H 1.48505 * 109.47070 * 270.00037 * 3 2 1 5 5 H 1.48504 * 109.47015 * 29.99839 * 3 2 1 6 6 H 1.48496 * 109.47265 * 149.99938 * 3 2 1 7 7 C 1.37879 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99915 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99601 * 359.97438 * 7 2 1 10 10 O 1.42906 * 109.46609 * 179.97438 * 9 7 2 11 11 C 1.42898 * 113.99730 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.53801 * 30.09922 * 11 10 9 13 13 C 1.53124 * 109.50233 * 270.00313 * 11 10 9 14 14 C 1.53126 * 109.15878 * 182.40634 * 13 11 10 15 15 C 1.53037 * 109.27801 * 57.65645 * 14 13 11 16 16 N 1.46854 * 109.51886 * 300.81620 * 15 14 13 17 17 C 1.46897 * 110.99665 * 185.84309 * 16 15 14 18 18 C 1.53004 * 117.50263 * 7.57493 * 17 16 15 19 19 C 1.52998 * 59.99965 * 252.51126 * 18 17 16 20 20 C 1.46844 * 111.19703 * 61.74789 * 16 15 14 21 21 H 0.97000 * 120.00341 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.47246 * 60.00552 * 9 7 2 23 23 H 1.09000 * 109.47639 * 299.99711 * 9 7 2 24 24 H 1.08998 * 109.52745 * 62.49962 * 13 11 10 25 25 H 1.08999 * 109.52030 * 302.30418 * 13 11 10 26 26 H 1.09000 * 109.49775 * 177.59563 * 14 13 11 27 27 H 1.08992 * 109.50023 * 297.71261 * 14 13 11 28 28 H 1.08994 * 109.46593 * 60.83220 * 15 14 13 29 29 H 1.09004 * 109.46132 * 180.80891 * 15 14 13 30 30 H 1.08996 * 115.55277 * 153.28739 * 17 16 15 31 31 H 1.09009 * 117.49447 * 0.02562 * 18 17 16 32 32 H 1.08998 * 117.49921 * 145.01891 * 18 17 16 33 33 H 1.09004 * 117.49488 * 252.50390 * 19 18 17 34 34 H 1.09003 * 117.51423 * 107.48191 * 19 18 17 35 35 H 1.09002 * 109.46133 * 58.27161 * 20 16 15 36 36 H 1.09002 * 109.46211 * 178.23687 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0017 10 8 2.1796 -3.5853 0.0015 11 6 1.5650 -4.8754 0.0019 12 1 0.6057 -4.8223 -0.5128 13 6 1.3458 -5.3366 1.4455 14 6 0.7425 -6.7440 1.4372 15 6 1.6765 -7.6896 0.6785 16 7 1.8536 -7.2054 -0.6966 17 6 2.6322 -8.1615 -1.4950 18 6 2.9556 -9.5150 -0.8590 19 6 4.0586 -8.4694 -1.0351 20 6 2.4751 -5.8751 -0.7152 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5575 -0.8881 23 1 0.6246 -2.5563 0.8920 24 1 0.6633 -4.6508 1.9474 25 1 2.3002 -5.3525 1.9717 26 1 0.6237 -7.0949 2.4623 27 1 -0.2296 -6.7203 0.9450 28 1 2.6441 -7.7233 1.1791 29 1 1.2430 -8.6895 0.6584 30 1 2.4428 -8.1418 -2.5682 31 1 2.5901 -9.6961 0.1519 32 1 2.9786 -10.3861 -1.5138 33 1 4.8074 -8.6528 -1.8057 34 1 4.4193 -7.9624 -0.1401 35 1 3.4390 -5.9175 -0.2080 36 1 2.6217 -5.5572 -1.7475 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259966778.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:43 Heat of formation + Delta-G solvation = -23.486148 kcal Electronic energy + Delta-G solvation = -15780.078162 eV Core-core repulsion = 13264.801998 eV Total energy + Delta-G solvation = -2515.276164 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.69903 -37.15867 -34.93364 -32.66738 -31.33784 -29.63030 -26.94762 -24.51547 -23.17178 -22.30778 -21.94707 -20.59576 -19.20813 -16.85280 -16.31613 -15.49316 -15.46484 -14.61367 -14.36425 -14.23536 -13.94202 -13.42938 -12.76247 -12.65290 -12.31414 -12.21035 -11.84475 -11.53511 -11.00183 -10.91948 -10.84483 -10.77100 -10.46244 -10.37246 -10.25371 -10.22950 -9.80037 -9.08667 -8.78668 -8.21439 -8.11578 -6.09608 -4.11385 3.31132 3.36001 3.41122 3.56516 3.87732 4.37891 4.66963 4.79198 4.82753 4.93100 5.12405 5.16664 5.25319 5.27521 5.46531 5.54418 5.64296 5.67592 5.79031 5.90322 5.93720 5.97847 6.02707 6.12449 6.24142 6.27860 6.56379 6.66726 7.10113 7.15725 7.18198 7.46329 7.81121 8.17339 8.60537 9.02190 9.53402 11.01838 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.051815 B = 0.005354 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.257052 B = 5228.041228 C = 5524.543481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.197 3.803 10 O -0.391 6.391 11 C 0.094 3.906 12 H 0.060 0.940 13 C -0.143 4.143 14 C -0.114 4.114 15 C 0.050 3.950 16 N -0.505 5.505 17 C 0.028 3.972 18 C -0.187 4.187 19 C -0.216 4.216 20 C 0.065 3.935 21 H 0.264 0.736 22 H 0.006 0.994 23 H 0.006 0.994 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.125 0.875 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.040 0.960 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.465 -16.759 -0.004 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.123 3.877 10 O -0.310 6.310 11 C 0.034 3.966 12 H 0.078 0.922 13 C -0.181 4.181 14 C -0.152 4.152 15 C -0.078 4.078 16 N -0.229 5.229 17 C -0.081 4.081 18 C -0.225 4.225 19 C -0.255 4.255 20 C -0.062 4.062 21 H 0.073 0.927 22 H 0.024 0.976 23 H 0.023 0.977 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.058 0.942 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.029 -16.523 -0.203 16.799 hybrid contribution 0.883 0.788 0.401 1.250 sum 3.912 -15.734 0.198 16.215 Atomic orbital electron populations 1.69963 1.06090 1.27139 1.50523 1.24941 0.94963 0.99387 0.95147 0.86348 0.79665 0.82308 0.78241 1.20447 1.21076 1.19655 1.21067 0.94048 0.89408 1.50852 0.91598 1.20240 0.88678 0.83381 0.95406 1.87847 1.35683 1.12717 1.94726 1.21739 0.95836 0.85217 0.93786 0.92219 1.22109 1.01318 0.95977 0.98677 1.21558 0.99381 0.94917 0.99380 1.22264 0.98503 0.98676 0.88332 1.61829 1.47477 1.01655 1.11941 1.22830 0.93180 0.93850 0.98239 1.23314 1.03313 0.93026 1.02806 1.23400 0.93628 1.04340 1.04179 1.22012 0.95792 0.87012 1.01391 0.92658 0.97633 0.97655 0.91296 0.91932 0.91529 0.91052 0.94876 0.90509 0.85739 0.88163 0.88451 0.88580 0.88936 0.94174 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.91 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -15.34 9.43 -34.44 -0.32 -15.67 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.20 5.48 5.50 36.01 0.20 5.68 16 10 O -0.39 -9.61 9.98 -35.23 -0.35 -9.96 16 11 C 0.09 1.83 2.77 -26.65 -0.07 1.75 16 12 H 0.06 1.21 7.79 -51.93 -0.40 0.81 16 13 C -0.14 -2.44 5.62 -26.60 -0.15 -2.59 16 14 C -0.11 -1.54 6.09 -26.65 -0.16 -1.71 16 15 C 0.05 0.63 4.12 -3.83 -0.02 0.61 16 16 N -0.51 -7.11 4.88 -226.69 -1.11 -8.22 16 17 C 0.03 0.33 6.26 -67.71 -0.42 -0.10 16 18 C -0.19 -1.78 9.50 -26.73 -0.25 -2.04 16 19 C -0.22 -2.29 9.50 -26.73 -0.25 -2.54 16 20 C 0.07 1.08 4.89 -3.84 -0.02 1.06 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.01 0.17 8.09 -51.93 -0.42 -0.25 16 23 H 0.01 0.16 7.94 -51.93 -0.41 -0.25 16 24 H 0.07 1.26 7.94 -51.93 -0.41 0.84 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.03 0.42 7.33 -51.93 -0.38 0.04 16 29 H 0.08 0.84 6.53 -51.93 -0.34 0.50 16 30 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.10 0.93 5.82 -51.92 -0.30 0.63 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.08 7.24 -51.93 -0.38 0.70 16 35 H 0.04 0.67 7.52 -51.93 -0.39 0.28 16 36 H 0.08 1.36 8.12 -51.93 -0.42 0.93 16 LS Contribution 287.46 15.07 4.33 4.33 Total: -1.00 -30.72 287.46 -8.93 -39.64 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.94 Total: -2.46 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -1.58 Total: -13.97 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: -0.37 Total: -34.54 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.35 Total: -9.96 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.72 -8.93 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966778.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.158 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds