Wall clock time and date at job start Mon Mar 30 2020 03:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00125 * 2 1 4 4 H 1.48505 * 109.47070 * 270.00037 * 3 2 1 5 5 H 1.48504 * 109.47015 * 29.99839 * 3 2 1 6 6 H 1.48496 * 109.47265 * 149.99938 * 3 2 1 7 7 C 1.37879 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99915 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99601 * 359.97438 * 7 2 1 10 10 O 1.42906 * 109.46609 * 179.97438 * 9 7 2 11 11 C 1.42898 * 113.99730 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.53801 * 30.09922 * 11 10 9 13 13 C 1.53124 * 109.50233 * 270.00313 * 11 10 9 14 14 C 1.53126 * 109.15878 * 182.40634 * 13 11 10 15 15 C 1.53037 * 109.27801 * 57.65645 * 14 13 11 16 16 N 1.46854 * 109.51886 * 300.81620 * 15 14 13 17 17 C 1.46897 * 110.99665 * 185.84309 * 16 15 14 18 18 C 1.53004 * 117.50263 * 7.57493 * 17 16 15 19 19 C 1.52998 * 59.99965 * 252.51126 * 18 17 16 20 20 C 1.46844 * 111.19703 * 61.74789 * 16 15 14 21 21 H 0.97000 * 120.00341 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.47246 * 60.00552 * 9 7 2 23 23 H 1.09000 * 109.47639 * 299.99711 * 9 7 2 24 24 H 1.08998 * 109.52745 * 62.49962 * 13 11 10 25 25 H 1.08999 * 109.52030 * 302.30418 * 13 11 10 26 26 H 1.09000 * 109.49775 * 177.59563 * 14 13 11 27 27 H 1.08992 * 109.50023 * 297.71261 * 14 13 11 28 28 H 1.08994 * 109.46593 * 60.83220 * 15 14 13 29 29 H 1.09004 * 109.46132 * 180.80891 * 15 14 13 30 30 H 1.08996 * 115.55277 * 153.28739 * 17 16 15 31 31 H 1.09009 * 117.49447 * 0.02562 * 18 17 16 32 32 H 1.08998 * 117.49921 * 145.01891 * 18 17 16 33 33 H 1.09004 * 117.49488 * 252.50390 * 19 18 17 34 34 H 1.09003 * 117.51423 * 107.48191 * 19 18 17 35 35 H 1.09002 * 109.46133 * 58.27161 * 20 16 15 36 36 H 1.09002 * 109.46211 * 178.23687 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0017 10 8 2.1796 -3.5853 0.0015 11 6 1.5650 -4.8754 0.0019 12 1 0.6057 -4.8223 -0.5128 13 6 1.3458 -5.3366 1.4455 14 6 0.7425 -6.7440 1.4372 15 6 1.6765 -7.6896 0.6785 16 7 1.8536 -7.2054 -0.6966 17 6 2.6322 -8.1615 -1.4950 18 6 2.9556 -9.5150 -0.8590 19 6 4.0586 -8.4694 -1.0351 20 6 2.4751 -5.8751 -0.7152 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5575 -0.8881 23 1 0.6246 -2.5563 0.8920 24 1 0.6633 -4.6508 1.9474 25 1 2.3002 -5.3525 1.9717 26 1 0.6237 -7.0949 2.4623 27 1 -0.2296 -6.7203 0.9450 28 1 2.6441 -7.7233 1.1791 29 1 1.2430 -8.6895 0.6584 30 1 2.4428 -8.1418 -2.5682 31 1 2.5901 -9.6961 0.1519 32 1 2.9786 -10.3861 -1.5138 33 1 4.8074 -8.6528 -1.8057 34 1 4.4193 -7.9624 -0.1401 35 1 3.4390 -5.9175 -0.2080 36 1 2.6217 -5.5572 -1.7475 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966778.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:43 Heat of formation + Delta-G solvation = -43.703250 kcal Electronic energy + Delta-G solvation = -15780.954841 eV Core-core repulsion = 13264.801998 eV Total energy + Delta-G solvation = -2516.152843 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85643 -38.73768 -36.29939 -34.84950 -32.49851 -31.13893 -29.05090 -25.75327 -24.59922 -24.13150 -22.90226 -21.84967 -20.40440 -18.69940 -17.84118 -17.26961 -16.46926 -16.32035 -15.99327 -15.78173 -15.35064 -14.71984 -14.41771 -14.04472 -13.85466 -13.55086 -13.21883 -12.91708 -12.81806 -12.54223 -12.25987 -12.03765 -11.99111 -11.77445 -11.64828 -11.37795 -11.28630 -11.09901 -10.83358 -10.17767 -9.27700 -8.33641 -6.46870 1.39019 1.42223 1.54206 2.30514 2.51482 2.94964 2.99907 3.38130 3.69703 3.83248 3.90705 3.97423 4.06503 4.07322 4.22728 4.36929 4.51195 4.58767 4.63816 4.74430 4.78212 4.85936 4.91238 4.98664 4.99703 5.09972 5.14856 5.20032 5.23961 5.33236 5.53618 5.93143 5.97525 6.11740 6.52007 6.79636 7.25199 8.78757 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.051815 B = 0.005354 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.257052 B = 5228.041228 C = 5524.543481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.985 3.015 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.062 0.938 9 C 0.215 3.785 10 O -0.406 6.406 11 C 0.083 3.917 12 H 0.045 0.955 13 C -0.139 4.139 14 C -0.107 4.107 15 C 0.051 3.949 16 N -0.514 5.514 17 C 0.005 3.995 18 C -0.165 4.165 19 C -0.217 4.217 20 C 0.079 3.921 21 H 0.271 0.729 22 H -0.017 1.017 23 H -0.014 1.014 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.104 0.896 30 H 0.129 0.871 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.284 -17.845 0.191 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.080 0.920 9 C 0.140 3.860 10 O -0.325 6.325 11 C 0.024 3.976 12 H 0.063 0.937 13 C -0.177 4.177 14 C -0.145 4.145 15 C -0.077 4.077 16 N -0.238 5.238 17 C -0.103 4.103 18 C -0.202 4.202 19 C -0.257 4.257 20 C -0.049 4.049 21 H 0.080 0.920 22 H 0.001 0.999 23 H 0.004 0.996 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.112 0.888 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.122 0.878 30 H 0.147 0.853 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.847 -17.645 -0.011 18.060 hybrid contribution 0.593 1.039 0.330 1.241 sum 4.441 -16.606 0.319 17.193 Atomic orbital electron populations 1.70073 1.07807 1.28729 1.50283 1.25977 0.95965 1.03410 0.93754 0.85164 0.78343 0.76873 0.78906 1.19194 1.19768 1.18868 1.21392 0.94102 0.90825 1.52588 0.92021 1.19826 0.88471 0.84444 0.93305 1.87790 1.35653 1.14132 1.94911 1.22073 0.95772 0.83758 0.95986 0.93720 1.22048 1.01140 0.98099 0.96379 1.21554 0.99064 0.92547 1.01348 1.22345 0.98565 0.99439 0.87304 1.61791 1.47899 1.00889 1.13225 1.22929 0.94061 0.94990 0.98361 1.23421 1.01070 0.92432 1.03238 1.23405 0.93469 1.04824 1.03956 1.21755 0.94900 0.88052 1.00157 0.91966 0.99934 0.99578 0.93275 0.91973 0.88768 0.91382 0.94498 0.87810 0.85330 0.87520 0.86312 0.87398 0.90141 0.94472 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.98 44.96 29.54 68.60 2.03 46.98 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.55 -33.74 9.43 25.60 0.24 -33.49 16 8 H 0.06 3.73 7.81 -2.91 -0.02 3.70 16 9 C 0.21 12.54 5.50 71.24 0.39 12.93 16 10 O -0.41 -20.89 9.98 -148.98 -1.49 -22.37 16 11 C 0.08 3.35 2.77 30.65 0.08 3.44 16 12 H 0.04 1.93 7.79 -2.39 -0.02 1.91 16 13 C -0.14 -4.82 5.62 30.68 0.17 -4.65 16 14 C -0.11 -2.75 6.09 30.65 0.19 -2.56 16 15 C 0.05 1.16 4.12 86.32 0.36 1.52 16 16 N -0.51 -13.92 4.88 -871.12 -4.25 -18.17 16 17 C 0.01 0.11 6.26 44.92 0.28 0.39 16 18 C -0.16 -2.59 9.50 30.59 0.29 -2.30 16 19 C -0.22 -4.14 9.50 30.59 0.29 -3.85 16 20 C 0.08 2.66 4.89 86.33 0.42 3.09 16 21 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 22 H -0.02 -1.05 8.09 -2.38 -0.02 -1.07 16 23 H -0.01 -0.82 7.94 -2.39 -0.02 -0.84 16 24 H 0.05 1.87 7.94 -2.39 -0.02 1.85 16 25 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 0.84 7.33 -2.39 -0.02 0.82 16 29 H 0.10 1.88 6.53 -2.39 -0.02 1.86 16 30 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.11 1.56 5.82 -2.38 -0.01 1.55 16 32 H 0.12 1.40 8.14 -2.39 -0.02 1.39 16 33 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.75 7.24 -2.39 -0.02 1.73 16 35 H 0.04 1.26 7.52 -2.39 -0.02 1.24 16 36 H 0.07 2.47 8.12 -2.39 -0.02 2.45 16 Total: -1.00 -67.24 287.46 0.79 -66.46 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.03 Total: 8.23 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 3.18 Total: -24.58 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -3.97 Total: -74.72 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -1.49 Total: -22.37 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -67.24 0.79 -66.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966778.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.754 kcal (2) G-P(sol) polarization free energy of solvation -67.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds