Wall clock time and date at job start Mon Mar 30 2020 03:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48505 * 109.47057 * 240.00143 * 3 2 1 5 5 H 1.48495 * 109.47343 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47005 * 120.00230 * 3 2 1 7 7 C 1.37881 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99696 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99635 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.43885 * 57.46712 * 9 7 2 11 11 C 1.54881 * 110.60153 * 294.84161 * 9 7 2 12 12 C 1.54891 * 102.75247 * 203.32838 * 11 9 7 13 13 C 1.54268 * 104.19412 * 37.94090 * 12 11 9 14 14 H 1.08997 * 110.07492 * 95.69686 * 13 12 11 15 15 N 1.46900 * 110.03564 * 217.11059 * 13 12 11 16 16 C 1.48720 * 111.01831 * 181.65786 * 15 13 12 17 17 C 1.54381 * 104.51692 * 158.96284 * 16 15 13 18 18 C 1.54257 * 105.14978 * 336.27274 * 17 16 15 19 19 H 1.09009 * 110.32136 * 241.05045 * 18 17 16 20 20 O 1.42897 * 110.32932 * 118.94591 * 18 17 16 21 21 C 1.48567 * 110.99718 * 297.16768 * 15 13 12 22 22 C 1.53876 * 106.59828 * 336.39472 * 13 12 11 23 23 H 0.96999 * 120.00305 * 0.02562 * 1 2 3 24 24 H 1.09007 * 110.75923 * 321.63887 * 11 9 7 25 25 H 1.08996 * 110.75876 * 84.82709 * 11 9 7 26 26 H 1.09001 * 110.48496 * 279.26487 * 12 11 9 27 27 H 1.08994 * 110.49254 * 156.62214 * 12 11 9 28 28 H 1.09004 * 110.38960 * 40.24251 * 16 15 13 29 29 H 1.08996 * 110.50963 * 277.74694 * 16 15 13 30 30 H 1.09002 * 110.32526 * 217.32092 * 17 16 15 31 31 H 1.08998 * 110.32190 * 95.21733 * 17 16 15 32 32 H 0.96700 * 113.99805 * 61.44815 * 20 18 17 33 33 H 1.08999 * 110.41133 * 82.17552 * 21 15 13 34 34 H 1.09001 * 110.41003 * 319.73948 * 21 15 13 35 35 H 1.08996 * 110.03310 * 119.28344 * 22 13 12 36 36 H 1.09009 * 110.03024 * 240.71310 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5847 -2.5539 -0.8614 11 6 0.4516 -2.6668 1.3154 12 6 0.2735 -4.2023 1.4139 13 6 1.6111 -4.7721 0.8982 14 1 2.2741 -4.9872 1.7362 15 7 1.3707 -5.9950 0.1204 16 6 2.6505 -6.5853 -0.3544 17 6 2.3098 -8.0620 -0.6489 18 6 1.0734 -8.3715 0.2200 19 1 1.2990 -9.1678 0.9294 20 8 -0.0331 -8.7417 -0.6050 21 6 0.7700 -7.0562 0.9691 22 6 2.2327 -3.6892 -0.0011 23 1 -0.4850 0.8400 -0.0004 24 1 1.0213 -2.2889 2.1644 25 1 -0.5144 -2.1667 1.2469 26 1 -0.5508 -4.5321 0.7815 27 1 0.1050 -4.5013 2.4484 28 1 3.4112 -6.5186 0.4235 29 1 2.9885 -6.0849 -1.2618 30 1 3.1422 -8.7063 -0.3661 31 1 2.0727 -8.1924 -1.7048 32 1 0.1188 -9.5376 -1.1327 33 1 -0.3063 -6.9085 1.0574 34 1 1.2356 -7.0638 1.9546 35 1 3.1968 -3.3782 0.4010 36 1 2.3559 -4.0711 -1.0146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260629940.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:19 Heat of formation + Delta-G solvation = -56.769722 kcal Electronic energy + Delta-G solvation = -16027.625127 eV Core-core repulsion = 13510.905679 eV Total energy + Delta-G solvation = -2516.719448 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.34499 -37.01863 -34.99459 -32.38392 -30.15039 -28.81835 -27.69703 -25.99939 -23.71154 -21.47627 -20.85066 -19.22619 -18.64005 -17.42623 -16.50938 -16.00214 -14.75355 -14.53640 -14.25217 -13.91440 -13.68385 -12.91098 -12.61561 -12.35378 -12.18968 -11.75022 -11.49701 -11.27091 -10.94164 -10.76887 -10.61993 -10.49058 -10.24079 -10.01398 -9.91635 -9.76405 -9.46199 -9.06429 -8.69186 -8.28209 -8.05607 -5.92172 -3.94709 3.36469 3.41158 3.43480 4.16146 4.28504 4.50473 4.68231 4.70934 5.10178 5.29633 5.38564 5.55143 5.61229 5.66459 5.73709 5.77920 5.91764 6.03148 6.08343 6.12904 6.36232 6.60940 6.63168 6.78384 6.91479 7.12040 7.23488 7.25576 7.43346 7.62591 7.66713 7.80058 7.98712 8.15550 8.55657 9.08303 9.68531 11.17388 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.057695 B = 0.005928 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.195703 B = 4721.827043 C = 4938.774347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.052 3.948 10 H 0.032 0.968 11 C -0.099 4.099 12 C -0.120 4.120 13 C 0.071 3.929 14 H 0.031 0.969 15 N -0.496 5.496 16 C 0.034 3.966 17 C -0.157 4.157 18 C 0.100 3.900 19 H 0.058 0.942 20 O -0.556 6.556 21 C 0.038 3.962 22 C -0.107 4.107 23 H 0.259 0.741 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.372 0.628 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 -15.738 1.400 16.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.033 3.967 10 H 0.051 0.949 11 C -0.138 4.138 12 C -0.157 4.157 13 C -0.037 4.037 14 H 0.049 0.951 15 N -0.221 5.221 16 C -0.094 4.094 17 C -0.196 4.196 18 C 0.041 3.959 19 H 0.076 0.924 20 O -0.361 6.361 21 C -0.090 4.090 22 C -0.145 4.145 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.219 0.781 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.521 -14.905 1.240 15.167 hybrid contribution 1.362 0.237 0.518 1.476 sum 3.883 -14.668 1.759 15.274 Atomic orbital electron populations 1.69955 1.05851 1.26405 1.50631 1.24979 0.94809 0.98891 0.95251 0.86734 0.79643 0.83530 0.78499 1.20374 1.21373 1.20400 1.21188 0.92610 0.90729 1.50622 0.92914 1.19383 0.92475 0.90950 0.93843 0.94948 1.22406 1.01360 0.90266 0.99744 1.22518 0.95990 0.99113 0.98127 1.22638 0.97278 0.89701 0.94060 0.95138 1.65642 1.19747 1.02939 1.33755 1.23059 0.92160 0.93466 1.00719 1.23097 0.98003 0.97127 1.01353 1.22551 0.85820 0.96095 0.91471 0.92438 1.86615 1.39931 1.48916 1.60628 1.23065 1.02075 0.89694 0.94157 1.22316 0.99295 0.95389 0.97466 0.93104 0.93647 0.91429 0.91597 0.94003 0.94127 0.89829 0.91326 0.90203 0.78103 0.89146 0.93131 0.93091 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 12.29 55.43 0.68 -25.53 16 2 C 0.06 1.76 5.35 -17.82 -0.10 1.67 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.43 8.47 -34.44 -0.29 -14.72 16 8 H 0.05 1.46 7.54 -52.49 -0.40 1.06 16 9 C 0.05 1.34 2.71 -90.12 -0.24 1.10 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 11 C -0.10 -2.39 5.75 -24.74 -0.14 -2.53 16 12 C -0.12 -2.39 5.68 -25.07 -0.14 -2.53 16 13 C 0.07 1.35 2.42 -66.59 -0.16 1.19 16 14 H 0.03 0.56 8.01 -51.93 -0.42 0.14 16 15 N -0.50 -8.41 5.08 -220.54 -1.12 -9.54 16 16 C 0.03 0.48 5.79 -2.09 -0.01 0.47 16 17 C -0.16 -1.76 6.79 -25.35 -0.17 -1.93 16 18 C 0.10 1.18 4.42 -25.35 -0.11 1.07 16 19 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 20 O -0.56 -6.90 13.27 -35.23 -0.47 -7.36 16 21 C 0.04 0.55 5.57 -2.18 -0.01 0.54 16 22 C -0.11 -2.31 5.68 -25.61 -0.15 -2.45 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 24 H 0.04 1.11 8.06 -51.92 -0.42 0.69 16 25 H 0.07 1.76 7.55 -51.93 -0.39 1.37 16 26 H 0.07 1.35 8.05 -51.93 -0.42 0.94 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.55 7.94 -51.93 -0.41 0.14 16 29 H 0.08 1.23 7.43 -51.93 -0.39 0.84 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.88 7.98 -51.93 -0.41 0.46 16 32 H 0.37 2.77 9.11 45.56 0.41 3.19 16 33 H 0.09 1.41 7.99 -51.93 -0.41 1.00 16 34 H 0.05 0.68 7.96 -51.93 -0.41 0.26 16 35 H 0.05 1.10 7.66 -51.93 -0.40 0.70 16 36 H 0.05 1.11 6.93 -51.92 -0.36 0.75 16 LS Contribution 283.24 15.07 4.27 4.27 Total: -1.00 -30.74 283.24 -8.44 -39.18 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.25 Total: 0.47 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -1.53 Total: -18.13 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.44 Total: -35.06 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.47 Total: -7.36 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.74 -8.44 -39.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260629940.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.592 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds