Wall clock time and date at job start Mon Mar 30 2020 03:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48505 * 109.47057 * 240.00143 * 3 2 1 5 5 H 1.48495 * 109.47343 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47005 * 120.00230 * 3 2 1 7 7 C 1.37881 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99696 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99635 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.43885 * 57.46712 * 9 7 2 11 11 C 1.54881 * 110.60153 * 294.84161 * 9 7 2 12 12 C 1.54891 * 102.75247 * 203.32838 * 11 9 7 13 13 C 1.54268 * 104.19412 * 37.94090 * 12 11 9 14 14 H 1.08997 * 110.07492 * 95.69686 * 13 12 11 15 15 N 1.46900 * 110.03564 * 217.11059 * 13 12 11 16 16 C 1.48720 * 111.01831 * 181.65786 * 15 13 12 17 17 C 1.54381 * 104.51692 * 158.96284 * 16 15 13 18 18 C 1.54257 * 105.14978 * 336.27274 * 17 16 15 19 19 H 1.09009 * 110.32136 * 241.05045 * 18 17 16 20 20 O 1.42897 * 110.32932 * 118.94591 * 18 17 16 21 21 C 1.48567 * 110.99718 * 297.16768 * 15 13 12 22 22 C 1.53876 * 106.59828 * 336.39472 * 13 12 11 23 23 H 0.96999 * 120.00305 * 0.02562 * 1 2 3 24 24 H 1.09007 * 110.75923 * 321.63887 * 11 9 7 25 25 H 1.08996 * 110.75876 * 84.82709 * 11 9 7 26 26 H 1.09001 * 110.48496 * 279.26487 * 12 11 9 27 27 H 1.08994 * 110.49254 * 156.62214 * 12 11 9 28 28 H 1.09004 * 110.38960 * 40.24251 * 16 15 13 29 29 H 1.08996 * 110.50963 * 277.74694 * 16 15 13 30 30 H 1.09002 * 110.32526 * 217.32092 * 17 16 15 31 31 H 1.08998 * 110.32190 * 95.21733 * 17 16 15 32 32 H 0.96700 * 113.99805 * 61.44815 * 20 18 17 33 33 H 1.08999 * 110.41133 * 82.17552 * 21 15 13 34 34 H 1.09001 * 110.41003 * 319.73948 * 21 15 13 35 35 H 1.08996 * 110.03310 * 119.28344 * 22 13 12 36 36 H 1.09009 * 110.03024 * 240.71310 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5847 -2.5539 -0.8614 11 6 0.4516 -2.6668 1.3154 12 6 0.2735 -4.2023 1.4139 13 6 1.6111 -4.7721 0.8982 14 1 2.2741 -4.9872 1.7362 15 7 1.3707 -5.9950 0.1204 16 6 2.6505 -6.5853 -0.3544 17 6 2.3098 -8.0620 -0.6489 18 6 1.0734 -8.3715 0.2200 19 1 1.2990 -9.1678 0.9294 20 8 -0.0331 -8.7417 -0.6050 21 6 0.7700 -7.0562 0.9691 22 6 2.2327 -3.6892 -0.0011 23 1 -0.4850 0.8400 -0.0004 24 1 1.0213 -2.2889 2.1644 25 1 -0.5144 -2.1667 1.2469 26 1 -0.5508 -4.5321 0.7815 27 1 0.1050 -4.5013 2.4484 28 1 3.4112 -6.5186 0.4235 29 1 2.9885 -6.0849 -1.2618 30 1 3.1422 -8.7063 -0.3661 31 1 2.0727 -8.1924 -1.7048 32 1 0.1188 -9.5376 -1.1327 33 1 -0.3063 -6.9085 1.0574 34 1 1.2356 -7.0638 1.9546 35 1 3.1968 -3.3782 0.4010 36 1 2.3559 -4.0711 -1.0146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260629940.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:19 Heat of formation + Delta-G solvation = -79.373499 kcal Electronic energy + Delta-G solvation = -16028.605300 eV Core-core repulsion = 13510.905679 eV Total energy + Delta-G solvation = -2517.699621 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.56247 -38.43631 -36.28462 -34.36415 -31.52214 -30.22905 -29.26032 -27.60723 -25.63724 -22.70280 -21.99424 -20.85044 -20.31760 -18.57535 -18.32045 -17.37210 -16.55657 -15.98203 -15.49919 -15.37242 -14.83931 -14.42185 -14.10788 -14.06855 -13.44890 -13.41473 -12.94865 -12.76983 -12.65275 -12.37929 -12.23799 -11.80165 -11.69824 -11.56093 -11.48158 -11.43451 -11.05379 -10.83541 -10.79235 -10.44159 -9.31374 -8.09961 -6.20576 1.41353 1.43339 1.50968 2.44424 3.05859 3.20108 3.35352 3.69152 3.73087 4.00157 4.06207 4.24788 4.34683 4.38923 4.63157 4.71784 4.74917 4.79957 4.81937 4.88704 4.99299 5.01493 5.02300 5.18593 5.22260 5.29275 5.41734 5.46838 5.64030 5.92645 5.97279 6.05235 6.22133 6.41170 6.90917 7.00141 7.46711 8.99058 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.057695 B = 0.005928 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.195703 B = 4721.827043 C = 4938.774347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.042 3.958 10 H -0.009 1.009 11 C -0.093 4.093 12 C -0.107 4.107 13 C 0.083 3.917 14 H 0.047 0.953 15 N -0.521 5.521 16 C 0.028 3.972 17 C -0.147 4.147 18 C 0.104 3.896 19 H 0.090 0.910 20 O -0.581 6.581 21 C 0.032 3.968 22 C -0.096 4.096 23 H 0.260 0.740 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.393 0.607 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.729 -17.346 2.068 18.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.571 4.571 8 H 0.072 0.928 9 C 0.024 3.976 10 H 0.009 0.991 11 C -0.131 4.131 12 C -0.145 4.145 13 C -0.025 4.025 14 H 0.065 0.935 15 N -0.246 5.246 16 C -0.100 4.100 17 C -0.185 4.185 18 C 0.045 3.955 19 H 0.107 0.893 20 O -0.389 6.389 21 C -0.096 4.096 22 C -0.134 4.134 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.243 0.757 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.978 -16.545 1.897 17.122 hybrid contribution 0.878 0.720 0.263 1.165 sum 4.856 -15.825 2.159 16.694 Atomic orbital electron populations 1.70102 1.07396 1.27240 1.51388 1.25815 0.95659 1.02567 0.94821 0.85656 0.78389 0.78971 0.78910 1.19648 1.21016 1.19376 1.21567 0.92882 0.92071 1.50628 0.92817 1.19363 0.92954 0.92287 0.93034 0.99098 1.22198 0.99215 0.93260 0.98459 1.22369 0.96636 0.95776 0.99683 1.22370 0.96149 0.90076 0.93945 0.93535 1.65527 1.21647 1.03175 1.34212 1.23149 0.91157 0.95308 1.00349 1.23067 0.98810 0.95260 1.01384 1.22571 0.85586 0.95503 0.91884 0.89265 1.86562 1.40580 1.50486 1.61275 1.23153 1.00929 0.90451 0.95062 1.22130 0.98264 0.94734 0.98282 0.93125 0.94337 0.94461 0.92614 0.91341 0.93169 0.91076 0.88221 0.90221 0.75674 0.90920 0.91609 0.93005 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.89 12.29 21.45 0.26 -55.63 16 2 C 0.01 0.57 5.35 84.66 0.45 1.02 16 3 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.53 -30.62 8.47 25.60 0.22 -30.41 16 8 H 0.05 2.99 7.54 -2.91 -0.02 2.97 16 9 C 0.04 2.26 2.71 -10.47 -0.03 2.23 16 10 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 11 C -0.09 -4.59 5.75 31.88 0.18 -4.41 16 12 C -0.11 -4.25 5.68 31.67 0.18 -4.07 16 13 C 0.08 3.05 2.42 45.64 0.11 3.16 16 14 H 0.05 1.58 8.01 -2.39 -0.02 1.56 16 15 N -0.52 -16.92 5.08 -851.66 -4.33 -21.25 16 16 C 0.03 0.73 5.79 86.42 0.50 1.23 16 17 C -0.15 -2.78 6.79 31.49 0.21 -2.57 16 18 C 0.10 2.11 4.42 31.49 0.14 2.24 16 19 H 0.09 1.29 8.14 -2.38 -0.02 1.28 16 20 O -0.58 -12.97 13.27 -148.98 -1.98 -14.95 16 21 C 0.03 0.85 5.57 86.45 0.48 1.33 16 22 C -0.10 -4.18 5.68 31.32 0.18 -4.00 16 23 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 24 H 0.04 1.91 8.06 -2.38 -0.02 1.89 16 25 H 0.04 2.02 7.55 -2.39 -0.02 2.00 16 26 H 0.06 2.32 8.05 -2.39 -0.02 2.30 16 27 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.05 1.22 7.94 -2.38 -0.02 1.20 16 29 H 0.07 2.01 7.43 -2.39 -0.02 1.99 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.52 7.98 -2.39 -0.02 1.50 16 32 H 0.39 4.75 9.11 -74.06 -0.67 4.07 16 33 H 0.07 2.18 7.99 -2.39 -0.02 2.16 16 34 H 0.07 1.55 7.96 -2.39 -0.02 1.53 16 35 H 0.05 2.21 7.66 -2.39 -0.02 2.19 16 36 H 0.05 2.17 6.93 -2.38 -0.02 2.15 16 Total: -1.00 -67.62 283.24 -1.01 -68.64 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.37 Total: 10.60 kcal Atomic # 6 Polarization: -36.85 SS G_CDS: 2.63 Total: -34.22 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -4.06 Total: -76.88 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -1.98 Total: -14.95 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -67.62 -1.01 -68.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260629940.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.738 kcal (2) G-P(sol) polarization free energy of solvation -67.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds