Wall clock time and date at job start Mon Mar 30 2020 03:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99913 * 2 1 4 4 H 1.48492 * 109.47631 * 94.35593 * 3 2 1 5 5 H 1.48504 * 109.46997 * 214.35998 * 3 2 1 6 6 H 1.48505 * 109.47203 * 334.35333 * 3 2 1 7 7 C 1.37877 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00131 * 15.35321 * 7 2 1 9 9 C 1.50702 * 119.99770 * 195.34662 * 7 2 1 10 10 O 1.42897 * 110.35035 * 3.10524 * 9 7 2 11 11 C 1.54719 * 110.39774 * 125.61017 * 9 7 2 12 12 C 1.52861 * 109.33202 * 225.31420 * 11 9 7 13 13 C 1.54669 * 110.04579 * 302.27831 * 12 11 9 14 14 C 1.53704 * 109.01909 * 330.61079 * 13 12 11 15 15 N 1.42603 * 109.70695 * 90.96532 * 14 13 12 16 16 C 1.45918 * 120.44935 * 137.25586 * 15 14 13 17 17 C 1.55104 * 105.41324 * 171.21416 * 16 15 14 18 18 C 1.55404 * 104.86844 * 358.93774 * 17 16 15 19 19 C 1.45786 * 120.83853 * 276.77946 * 15 14 13 20 20 H 1.08997 * 112.69175 * 294.07302 * 19 15 14 21 21 H 0.97000 * 120.00378 * 359.97438 * 1 2 3 22 22 H 0.96696 * 114.00184 * 67.83464 * 10 9 7 23 23 H 1.08998 * 109.49820 * 345.27575 * 11 9 7 24 24 H 1.09002 * 109.49129 * 105.35748 * 11 9 7 25 25 H 1.09008 * 109.37271 * 182.10487 * 12 11 9 26 26 H 1.08992 * 109.28122 * 62.39704 * 12 11 9 27 27 H 1.08993 * 109.54609 * 210.75387 * 13 12 11 28 28 H 1.08997 * 109.54695 * 90.47308 * 13 12 11 29 29 H 1.08995 * 109.43412 * 330.89255 * 14 13 12 30 30 H 1.09000 * 109.43013 * 211.03305 * 14 13 12 31 31 H 1.09004 * 110.25578 * 52.23135 * 16 15 14 32 32 H 1.09001 * 110.25910 * 290.20296 * 16 15 14 33 33 H 1.08999 * 110.36135 * 240.09248 * 17 16 15 34 34 H 1.08999 * 110.36067 * 117.78426 * 17 16 15 35 35 H 1.08995 * 110.86708 * 218.84597 * 18 17 16 36 36 H 1.08996 * 111.04830 * 95.23979 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5887 1.9933 1.3959 5 1 3.4975 1.4685 -0.7902 6 1 1.4035 2.6775 -0.6060 7 6 2.0045 -1.1941 0.0005 8 1 1.4934 -2.1128 -0.2467 9 6 3.4712 -1.2171 0.3460 10 8 3.9175 0.0916 0.7063 11 6 3.7389 -2.2178 1.4952 12 6 4.6646 -1.5701 2.5248 13 6 5.9852 -1.1323 1.8491 14 6 6.2763 -2.0682 0.6651 15 7 5.6990 -1.5331 -0.5241 16 6 6.4420 -1.5513 -1.7798 17 6 5.4274 -1.1072 -2.8656 18 6 4.0951 -0.8817 -2.0980 19 6 4.2933 -1.7575 -0.8388 20 1 4.0691 -2.8055 -1.0376 21 1 -0.4851 0.8400 0.0004 22 1 3.5465 0.4189 1.5371 23 1 2.7957 -2.4855 1.9716 24 1 4.2115 -3.1144 1.0941 25 1 4.8837 -2.2874 3.3159 26 1 4.1715 -0.6980 2.9539 27 1 6.8007 -1.1915 2.5697 28 1 5.8885 -0.1080 1.4891 29 1 5.8486 -3.0504 0.8656 30 1 7.3543 -2.1626 0.5340 31 1 6.8033 -2.5580 -1.9900 32 1 7.2767 -0.8518 -1.7346 33 1 5.3059 -1.8903 -3.6140 34 1 5.7560 -0.1802 -3.3353 35 1 3.2453 -1.2312 -2.6843 36 1 3.9724 0.1667 -1.8264 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260666688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:26 Heat of formation + Delta-G solvation = -22.280008 kcal Electronic energy + Delta-G solvation = -17529.107176 eV Core-core repulsion = 15013.883315 eV Total energy + Delta-G solvation = -2515.223862 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.61748 -36.23948 -34.31454 -32.19815 -30.94598 -29.68889 -27.33043 -25.71153 -23.64570 -22.22599 -20.19813 -19.21582 -18.78342 -17.27475 -15.78971 -15.35253 -15.25093 -14.67433 -14.40040 -13.63299 -13.10425 -12.88740 -12.65238 -12.10188 -11.77309 -11.76729 -11.43709 -11.18859 -10.97420 -10.72925 -10.51852 -10.36451 -10.14954 -10.02515 -9.99338 -9.68282 -9.22584 -9.11585 -8.25130 -7.92656 -7.09600 -6.07595 -4.10521 3.42933 3.64853 3.87975 4.47864 4.59941 5.13435 5.26584 5.39448 5.43961 5.46631 5.61652 5.67324 5.71916 5.96218 5.99870 6.03510 6.12312 6.17810 6.33881 6.35266 6.44676 6.52068 6.61788 6.69240 6.75906 6.91277 7.05601 7.11149 7.20633 7.33691 7.65200 7.99564 8.26781 8.40364 8.78810 8.93933 9.57183 11.01961 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027011 B = 0.015105 C = 0.012164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.362128 B = 1853.249595 C = 2301.323251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.961 3.039 4 H -0.311 1.311 5 H -0.256 1.256 6 H -0.340 1.340 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.239 3.761 10 O -0.528 6.528 11 C -0.153 4.153 12 C -0.112 4.112 13 C -0.122 4.122 14 C 0.122 3.878 15 N -0.622 5.622 16 C 0.093 3.907 17 C -0.133 4.133 18 C -0.109 4.109 19 C 0.136 3.864 20 H 0.044 0.956 21 H 0.263 0.737 22 H 0.359 0.641 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.090 0.910 29 H 0.031 0.969 30 H 0.049 0.951 31 H 0.019 0.981 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.426 -2.320 0.223 11.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.803 3.197 4 H -0.241 1.241 5 H -0.184 1.184 6 H -0.274 1.274 7 C -0.584 4.584 8 H 0.094 0.906 9 C 0.198 3.802 10 O -0.338 6.338 11 C -0.191 4.191 12 C -0.149 4.149 13 C -0.160 4.160 14 C -0.006 4.006 15 N -0.349 5.349 16 C -0.033 4.033 17 C -0.171 4.171 18 C -0.147 4.147 19 C 0.030 3.970 20 H 0.062 0.938 21 H 0.072 0.928 22 H 0.209 0.791 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.621 -2.050 -0.194 11.802 hybrid contribution 0.038 0.065 0.458 0.464 sum 11.659 -1.985 0.264 11.830 Atomic orbital electron populations 1.70026 1.07045 1.27587 1.47982 1.25244 0.94945 1.00693 0.93306 0.85478 0.77625 0.79333 0.77298 1.24136 1.18399 1.27423 1.21164 0.91576 0.95792 1.49918 0.90574 1.19624 0.92149 0.79015 0.89380 1.86373 1.72181 1.33084 1.42120 1.23037 0.98438 0.99525 0.98112 1.21738 0.96170 0.99542 0.97478 1.22355 0.95571 1.02289 0.95818 1.20655 0.96193 0.95397 0.88312 1.53989 1.03558 1.73337 1.04036 1.21939 0.95640 0.97598 0.88150 1.22720 0.96988 1.00308 0.97043 1.22606 0.94440 1.02591 0.95087 1.22208 0.83339 0.95722 0.95755 0.93843 0.92763 0.79136 0.91900 0.93030 0.93836 0.92848 0.93792 0.89147 0.95082 0.93263 0.96340 0.92523 0.92524 0.92025 0.91586 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 2 C 0.06 1.72 5.47 -17.82 -0.10 1.62 16 3 Si 0.96 23.79 23.76 -169.99 -4.04 19.75 16 4 H -0.31 -7.39 6.53 56.52 0.37 -7.02 16 5 H -0.26 -6.25 4.44 56.52 0.25 -6.00 16 6 H -0.34 -8.86 7.11 56.52 0.40 -8.46 16 7 C -0.55 -14.65 8.09 -34.44 -0.28 -14.93 16 8 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 9 C 0.24 5.34 0.61 -90.34 -0.06 5.28 16 10 O -0.53 -11.73 4.37 -35.23 -0.15 -11.89 16 11 C -0.15 -3.06 5.14 -25.90 -0.13 -3.19 16 12 C -0.11 -1.92 5.49 -25.92 -0.14 -2.06 16 13 C -0.12 -1.99 5.68 -25.49 -0.14 -2.14 16 14 C 0.12 2.01 5.68 -5.72 -0.03 1.98 16 15 N -0.62 -11.45 2.98 -228.28 -0.68 -12.13 16 16 C 0.09 1.51 6.92 -3.24 -0.02 1.49 16 17 C -0.13 -2.18 7.00 -24.34 -0.17 -2.35 16 18 C -0.11 -2.23 5.93 -24.58 -0.15 -2.38 16 19 C 0.14 2.81 2.28 -66.92 -0.15 2.66 16 20 H 0.04 0.92 7.88 -51.93 -0.41 0.51 16 21 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 22 H 0.36 7.77 5.11 45.56 0.23 8.00 16 23 H 0.06 1.34 7.73 -51.93 -0.40 0.94 16 24 H 0.05 0.99 5.22 -51.93 -0.27 0.72 16 25 H 0.04 0.67 8.14 -51.92 -0.42 0.24 16 26 H 0.05 0.93 6.83 -51.93 -0.35 0.57 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.66 6.39 -51.93 -0.33 1.33 16 29 H 0.03 0.52 5.87 -51.93 -0.30 0.22 16 30 H 0.05 0.72 7.94 -51.93 -0.41 0.31 16 31 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.09 2.05 4.74 -51.93 -0.25 1.80 16 LS Contribution 252.51 15.07 3.81 3.81 Total: -1.00 -29.06 252.51 -6.87 -35.93 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.20 Total: 4.54 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -1.38 Total: -14.02 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.09 Total: -38.12 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.15 Total: -11.89 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -4.04 Total: 19.75 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.06 -6.87 -35.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260666688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.648 kcal (2) G-P(sol) polarization free energy of solvation -29.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds