Wall clock time and date at job start Mon Mar 30 2020 03:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99913 * 2 1 4 4 H 1.48492 * 109.47631 * 94.35593 * 3 2 1 5 5 H 1.48504 * 109.46997 * 214.35998 * 3 2 1 6 6 H 1.48505 * 109.47203 * 334.35333 * 3 2 1 7 7 C 1.37877 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00131 * 15.35321 * 7 2 1 9 9 C 1.50702 * 119.99770 * 195.34662 * 7 2 1 10 10 O 1.42897 * 110.35035 * 3.10524 * 9 7 2 11 11 C 1.54719 * 110.39774 * 125.61017 * 9 7 2 12 12 C 1.52861 * 109.33202 * 225.31420 * 11 9 7 13 13 C 1.54669 * 110.04579 * 302.27831 * 12 11 9 14 14 C 1.53704 * 109.01909 * 330.61079 * 13 12 11 15 15 N 1.42603 * 109.70695 * 90.96532 * 14 13 12 16 16 C 1.45918 * 120.44935 * 137.25586 * 15 14 13 17 17 C 1.55104 * 105.41324 * 171.21416 * 16 15 14 18 18 C 1.55404 * 104.86844 * 358.93774 * 17 16 15 19 19 C 1.45786 * 120.83853 * 276.77946 * 15 14 13 20 20 H 1.08997 * 112.69175 * 294.07302 * 19 15 14 21 21 H 0.97000 * 120.00378 * 359.97438 * 1 2 3 22 22 H 0.96696 * 114.00184 * 67.83464 * 10 9 7 23 23 H 1.08998 * 109.49820 * 345.27575 * 11 9 7 24 24 H 1.09002 * 109.49129 * 105.35748 * 11 9 7 25 25 H 1.09008 * 109.37271 * 182.10487 * 12 11 9 26 26 H 1.08992 * 109.28122 * 62.39704 * 12 11 9 27 27 H 1.08993 * 109.54609 * 210.75387 * 13 12 11 28 28 H 1.08997 * 109.54695 * 90.47308 * 13 12 11 29 29 H 1.08995 * 109.43412 * 330.89255 * 14 13 12 30 30 H 1.09000 * 109.43013 * 211.03305 * 14 13 12 31 31 H 1.09004 * 110.25578 * 52.23135 * 16 15 14 32 32 H 1.09001 * 110.25910 * 290.20296 * 16 15 14 33 33 H 1.08999 * 110.36135 * 240.09248 * 17 16 15 34 34 H 1.08999 * 110.36067 * 117.78426 * 17 16 15 35 35 H 1.08995 * 110.86708 * 218.84597 * 18 17 16 36 36 H 1.08996 * 111.04830 * 95.23979 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5887 1.9933 1.3959 5 1 3.4975 1.4685 -0.7902 6 1 1.4035 2.6775 -0.6060 7 6 2.0045 -1.1941 0.0005 8 1 1.4934 -2.1128 -0.2467 9 6 3.4712 -1.2171 0.3460 10 8 3.9175 0.0916 0.7063 11 6 3.7389 -2.2178 1.4952 12 6 4.6646 -1.5701 2.5248 13 6 5.9852 -1.1323 1.8491 14 6 6.2763 -2.0682 0.6651 15 7 5.6990 -1.5331 -0.5241 16 6 6.4420 -1.5513 -1.7798 17 6 5.4274 -1.1072 -2.8656 18 6 4.0951 -0.8817 -2.0980 19 6 4.2933 -1.7575 -0.8388 20 1 4.0691 -2.8055 -1.0376 21 1 -0.4851 0.8400 0.0004 22 1 3.5465 0.4189 1.5371 23 1 2.7957 -2.4855 1.9716 24 1 4.2115 -3.1144 1.0941 25 1 4.8837 -2.2874 3.3159 26 1 4.1715 -0.6980 2.9539 27 1 6.8007 -1.1915 2.5697 28 1 5.8885 -0.1080 1.4891 29 1 5.8486 -3.0504 0.8656 30 1 7.3543 -2.1626 0.5340 31 1 6.8033 -2.5580 -1.9900 32 1 7.2767 -0.8518 -1.7346 33 1 5.3059 -1.8903 -3.6140 34 1 5.7560 -0.1802 -3.3353 35 1 3.2453 -1.2312 -2.6843 36 1 3.9724 0.1667 -1.8264 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260666688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:25 Heat of formation + Delta-G solvation = -41.969479 kcal Electronic energy + Delta-G solvation = -17529.960976 eV Core-core repulsion = 15013.883315 eV Total energy + Delta-G solvation = -2516.077661 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.17527 -37.84936 -35.80545 -34.30981 -32.58051 -31.17252 -28.78143 -27.61046 -25.13063 -23.83926 -21.59873 -20.89173 -20.21291 -19.26445 -17.56541 -17.13042 -16.86326 -16.18388 -15.84649 -15.17830 -14.78934 -14.50202 -14.24670 -13.81783 -13.59210 -13.27989 -12.89913 -12.83289 -12.65531 -12.37718 -11.97499 -11.92384 -11.85843 -11.57343 -11.42432 -11.31711 -11.05846 -10.85761 -10.26734 -9.78487 -8.49954 -8.28132 -6.32048 1.41588 1.61273 1.87717 2.50283 3.01362 3.14146 3.61099 3.94409 4.02702 4.15818 4.20982 4.28498 4.31612 4.50106 4.56200 4.69540 4.76891 4.80538 4.91808 5.02849 5.04728 5.09829 5.17013 5.17593 5.31718 5.40398 5.47533 5.53874 5.65728 5.67010 5.80663 6.12700 6.51836 6.67073 6.92012 7.09854 7.40144 8.85606 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027011 B = 0.015105 C = 0.012164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.362128 B = 1853.249595 C = 2301.323251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.011 3.989 3 Si 1.022 2.978 4 H -0.291 1.291 5 H -0.249 1.249 6 H -0.359 1.359 7 C -0.541 4.541 8 H 0.034 0.966 9 C 0.235 3.765 10 O -0.523 6.523 11 C -0.147 4.147 12 C -0.109 4.109 13 C -0.116 4.116 14 C 0.116 3.884 15 N -0.629 5.629 16 C 0.093 3.907 17 C -0.124 4.124 18 C -0.116 4.116 19 C 0.139 3.861 20 H 0.035 0.965 21 H 0.262 0.738 22 H 0.361 0.639 23 H 0.038 0.962 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.029 0.971 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.772 -2.243 0.631 14.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.187 4.187 3 Si 0.861 3.139 4 H -0.220 1.220 5 H -0.176 1.176 6 H -0.295 1.295 7 C -0.579 4.579 8 H 0.053 0.947 9 C 0.195 3.805 10 O -0.332 6.332 11 C -0.185 4.185 12 C -0.146 4.146 13 C -0.154 4.154 14 C -0.010 4.010 15 N -0.357 5.357 16 C -0.033 4.033 17 C -0.162 4.162 18 C -0.154 4.154 19 C 0.032 3.968 20 H 0.052 0.948 21 H 0.071 0.929 22 H 0.211 0.789 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.007 -1.994 0.229 15.140 hybrid contribution -1.040 -0.074 0.316 1.089 sum 13.967 -2.068 0.545 14.129 Atomic orbital electron populations 1.70152 1.08787 1.28192 1.50840 1.26000 0.95370 1.03944 0.93348 0.84431 0.76110 0.75115 0.78206 1.22023 1.17565 1.29486 1.21413 0.94191 0.93939 1.48358 0.94728 1.19524 0.89725 0.79910 0.91366 1.86352 1.71593 1.32955 1.42331 1.22866 0.98321 0.99371 0.97928 1.21726 0.96047 0.99739 0.97121 1.22300 0.95763 1.00989 0.96383 1.20793 0.97653 0.95080 0.87499 1.53959 1.02436 1.73725 1.05605 1.22048 0.95514 0.99045 0.86645 1.22700 0.94511 1.01730 0.97276 1.22534 0.96431 1.00782 0.95695 1.21907 0.85092 0.95030 0.94817 0.94757 0.92908 0.78897 0.94300 0.92151 0.91461 0.93231 0.90745 0.90939 0.95332 0.90545 0.94573 0.90825 0.90779 0.90681 0.93253 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.80 13.96 21.45 0.30 -58.51 16 2 C 0.01 0.64 5.47 84.66 0.46 1.10 16 3 Si 1.02 49.72 23.76 68.60 1.63 51.35 16 4 H -0.29 -13.09 6.53 99.48 0.65 -12.44 16 5 H -0.25 -11.70 4.44 99.48 0.44 -11.26 16 6 H -0.36 -18.54 7.11 99.48 0.71 -17.83 16 7 C -0.54 -29.96 8.09 25.60 0.21 -29.75 16 8 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 9 C 0.24 10.44 0.61 -10.61 -0.01 10.43 16 10 O -0.52 -22.42 4.37 -148.98 -0.65 -23.07 16 11 C -0.15 -5.73 5.14 31.13 0.16 -5.57 16 12 C -0.11 -3.43 5.49 31.12 0.17 -3.26 16 13 C -0.12 -3.33 5.68 31.40 0.18 -3.15 16 14 C 0.12 3.37 5.68 87.33 0.50 3.87 16 15 N -0.63 -21.22 2.98 -876.13 -2.61 -23.83 16 16 C 0.09 2.64 6.92 87.21 0.60 3.25 16 17 C -0.12 -3.73 7.00 32.14 0.23 -3.50 16 18 C -0.12 -4.66 5.93 31.99 0.19 -4.47 16 19 C 0.14 5.59 2.28 46.03 0.10 5.69 16 20 H 0.03 1.45 7.88 -2.39 -0.02 1.43 16 21 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 22 H 0.36 15.00 5.11 -74.06 -0.38 14.62 16 23 H 0.04 1.67 7.73 -2.39 -0.02 1.65 16 24 H 0.06 2.24 5.22 -2.39 -0.01 2.23 16 25 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.05 1.60 6.83 -2.39 -0.02 1.58 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 2.39 6.39 -2.39 -0.02 2.37 16 29 H 0.03 0.86 5.87 -2.39 -0.01 0.84 16 30 H 0.08 1.84 7.94 -2.39 -0.02 1.82 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.07 2.94 4.74 -2.39 -0.01 2.93 16 Total: -1.00 -64.02 252.51 1.82 -62.20 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.36 Total: 17.21 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 2.79 Total: -25.36 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -2.31 Total: -82.33 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.65 Total: -23.07 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 1.63 Total: 51.35 kcal Total: -64.02 1.82 -62.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260666688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.231 kcal (2) G-P(sol) polarization free energy of solvation -64.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds