Wall clock time and date at job start Mon Mar 30 2020 03:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.94361 * 303.78311 * 10 9 7 12 12 C 1.52049 * 109.96362 * 64.99140 * 10 9 7 13 13 N 1.44055 * 112.24172 * 180.02562 * 12 10 9 14 14 C 1.46956 * 113.06426 * 42.64225 * 13 12 10 15 15 C 1.52496 * 110.17210 * 293.36259 * 14 13 12 16 16 C 1.52514 * 111.21897 * 336.85296 * 15 14 13 17 17 C 1.52207 * 111.46129 * 324.10915 * 16 15 14 18 18 C 1.43710 * 117.82818 * 270.12616 * 13 12 10 19 19 C 1.53653 * 108.83469 * 86.01130 * 16 15 14 20 20 H 1.09008 * 110.03691 * 221.02796 * 19 16 15 21 21 O 1.42903 * 110.04048 * 99.54187 * 19 16 15 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 24 24 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 25 25 H 1.08994 * 108.93523 * 300.74902 * 12 10 9 26 26 H 1.09004 * 108.92930 * 59.33027 * 12 10 9 27 27 H 1.09004 * 109.35362 * 53.58397 * 14 13 12 28 28 H 1.09002 * 109.35075 * 173.14424 * 14 13 12 29 29 H 1.08993 * 109.12599 * 216.40083 * 15 14 13 30 30 H 1.09002 * 109.07987 * 97.27175 * 15 14 13 31 31 H 1.09006 * 108.34312 * 204.28460 * 16 15 14 32 32 H 1.09010 * 109.02106 * 296.27346 * 17 16 15 33 33 H 1.09001 * 108.96173 * 177.41638 * 17 16 15 34 34 H 1.08993 * 109.03454 * 206.45905 * 18 13 12 35 35 H 1.09008 * 109.03515 * 325.31683 * 18 13 12 36 36 H 0.96701 * 113.99887 * 182.89750 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 1 3.6078 -3.1781 0.8495 12 6 3.6253 -3.3261 -1.2974 13 7 4.0817 -4.6914 -1.3504 14 6 3.8900 -5.4121 -0.0841 15 6 4.7866 -4.8207 0.9985 16 6 5.9814 -4.0941 0.3897 17 6 6.4821 -4.7985 -0.8633 18 6 5.3818 -4.9429 -1.9088 19 6 5.5697 -2.6505 0.0620 20 1 5.9855 -2.3529 -0.9007 21 8 6.0256 -1.7664 1.0881 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6798 -0.8895 24 1 3.8745 -0.6809 0.8904 25 1 2.5392 -3.3125 -1.3876 26 1 4.0548 -2.7771 -2.1355 27 1 2.8479 -5.3291 0.2245 28 1 4.1399 -6.4636 -0.2256 29 1 5.1465 -5.6234 1.6419 30 1 4.2070 -4.1169 1.5959 31 1 6.7831 -4.0738 1.1280 32 1 6.8468 -5.7893 -0.5921 33 1 7.3035 -4.2222 -1.2892 34 1 5.4056 -5.9551 -2.3124 35 1 5.5646 -4.2349 -2.7172 36 1 5.7585 -0.8457 0.9612 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260808769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:32 Heat of formation + Delta-G solvation = -41.477260 kcal Electronic energy + Delta-G solvation = -16909.757690 eV Core-core repulsion = 14393.701373 eV Total energy + Delta-G solvation = -2516.056317 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.76492 -36.28672 -33.95149 -32.44325 -31.83533 -30.77645 -28.05830 -24.41194 -24.14766 -22.99929 -21.49656 -19.26664 -17.98346 -17.46589 -16.45801 -16.15577 -15.24869 -14.76137 -14.22575 -13.90101 -13.28872 -13.13878 -12.81213 -12.50004 -12.38288 -11.94436 -11.75690 -11.60518 -11.38333 -11.21460 -10.72212 -10.48966 -10.34168 -10.25534 -10.00762 -9.78888 -9.40827 -9.28929 -8.86957 -8.57079 -7.58004 -6.06639 -4.04546 3.27432 3.35587 3.36035 4.36494 4.41728 4.49680 4.87320 4.94805 5.23254 5.27014 5.40729 5.42741 5.49210 5.53715 5.67062 5.74104 5.82278 6.00299 6.07866 6.13861 6.16016 6.25781 6.32874 6.40640 6.42004 6.66903 6.81879 6.93762 7.09715 7.35047 7.62926 7.74961 7.89811 8.06643 8.51059 8.98136 9.55463 11.06488 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037049 B = 0.009160 C = 0.008254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.577593 B = 3055.965849 C = 3391.286676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.267 1.267 6 H -0.288 1.288 7 C -0.514 4.514 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.148 4.148 11 H 0.095 0.905 12 C 0.091 3.909 13 N -0.574 5.574 14 C 0.074 3.926 15 C -0.157 4.157 16 C -0.078 4.078 17 C -0.144 4.144 18 C 0.080 3.920 19 C 0.104 3.896 20 H 0.048 0.952 21 O -0.572 6.572 22 H 0.263 0.737 23 H 0.013 0.987 24 H 0.014 0.986 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.578 -8.237 -1.550 14.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.192 1.192 6 H -0.214 1.214 7 C -0.552 4.552 8 H 0.092 0.908 9 C -0.047 4.047 10 C -0.167 4.167 11 H 0.113 0.887 12 C -0.036 4.036 13 N -0.295 5.295 14 C -0.053 4.053 15 C -0.196 4.196 16 C -0.096 4.096 17 C -0.184 4.184 18 C -0.049 4.049 19 C 0.045 3.955 20 H 0.066 0.934 21 O -0.380 6.380 22 H 0.072 0.928 23 H 0.031 0.969 24 H 0.032 0.968 25 H 0.106 0.894 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 11.402 -8.840 -1.652 14.522 hybrid contribution 0.697 1.893 0.340 2.046 sum 12.099 -6.946 -1.312 14.013 Atomic orbital electron populations 1.69911 1.06257 1.26837 1.51028 1.25033 0.94713 0.99068 0.94649 0.86812 0.80300 0.83889 0.78429 1.20326 1.19209 1.21431 1.21041 0.89032 0.94426 1.50682 0.90751 1.19555 0.97818 0.91448 0.95882 1.23027 0.93344 1.00153 1.00209 0.88693 1.21260 1.01824 0.84230 0.96253 1.57631 1.26666 1.16680 1.28513 1.21750 0.99606 0.96658 0.87316 1.22355 0.97445 1.00254 0.99498 1.20842 0.98186 0.93322 0.97300 1.21899 0.99415 1.00455 0.96586 1.21250 0.86355 1.01357 0.95899 1.22601 0.94606 0.89061 0.89227 0.93408 1.86354 1.78799 1.22333 1.50481 0.92750 0.96921 0.96798 0.89353 0.92452 0.90657 0.91735 0.92635 0.89471 0.90957 0.91964 0.92079 0.91532 0.91803 0.77266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 7 C -0.51 -14.05 8.96 -34.44 -0.31 -14.36 16 8 H 0.07 2.19 7.30 -52.49 -0.38 1.81 16 9 C -0.01 -0.21 3.04 -27.88 -0.08 -0.30 16 10 C -0.15 -2.84 1.74 -90.06 -0.16 -3.00 16 11 H 0.10 1.93 4.44 -51.93 -0.23 1.70 16 12 C 0.09 1.68 4.81 -5.83 -0.03 1.65 16 13 N -0.57 -9.01 4.36 -240.84 -1.05 -10.06 16 14 C 0.07 1.09 5.47 -4.05 -0.02 1.06 16 15 C -0.16 -2.31 5.24 -27.24 -0.14 -2.45 16 16 C -0.08 -1.16 2.79 -90.93 -0.25 -1.41 16 17 C -0.14 -1.83 5.21 -27.41 -0.14 -1.97 16 18 C 0.08 1.06 5.91 -5.79 -0.03 1.03 16 19 C 0.10 1.77 2.89 -25.35 -0.07 1.70 16 20 H 0.05 0.81 7.54 -51.92 -0.39 0.42 16 21 O -0.57 -10.20 13.05 -35.23 -0.46 -10.66 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 24 H 0.01 0.31 6.12 -51.93 -0.32 0.00 16 25 H 0.09 1.86 6.90 -51.93 -0.36 1.50 16 26 H 0.06 1.04 7.61 -51.93 -0.39 0.65 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.46 5.40 -51.93 -0.28 1.18 16 31 H 0.07 1.11 7.97 -51.93 -0.41 0.69 16 32 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.84 7.70 -51.92 -0.40 0.44 16 36 H 0.38 6.15 7.22 45.56 0.33 6.48 16 LS Contribution 263.59 15.07 3.97 3.97 Total: -1.00 -29.59 263.59 -7.69 -37.28 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.91 Total: 5.71 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -1.34 Total: -16.25 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.28 Total: -36.65 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.46 Total: -10.66 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.59 -7.69 -37.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260808769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.201 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds