Wall clock time and date at job start Mon Mar 30 2020 03:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.94361 * 303.78311 * 10 9 7 12 12 C 1.52049 * 109.96362 * 64.99140 * 10 9 7 13 13 N 1.44055 * 112.24172 * 180.02562 * 12 10 9 14 14 C 1.46956 * 113.06426 * 42.64225 * 13 12 10 15 15 C 1.52496 * 110.17210 * 293.36259 * 14 13 12 16 16 C 1.52514 * 111.21897 * 336.85296 * 15 14 13 17 17 C 1.52207 * 111.46129 * 324.10915 * 16 15 14 18 18 C 1.43710 * 117.82818 * 270.12616 * 13 12 10 19 19 C 1.53653 * 108.83469 * 86.01130 * 16 15 14 20 20 H 1.09008 * 110.03691 * 221.02796 * 19 16 15 21 21 O 1.42903 * 110.04048 * 99.54187 * 19 16 15 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 24 24 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 25 25 H 1.08994 * 108.93523 * 300.74902 * 12 10 9 26 26 H 1.09004 * 108.92930 * 59.33027 * 12 10 9 27 27 H 1.09004 * 109.35362 * 53.58397 * 14 13 12 28 28 H 1.09002 * 109.35075 * 173.14424 * 14 13 12 29 29 H 1.08993 * 109.12599 * 216.40083 * 15 14 13 30 30 H 1.09002 * 109.07987 * 97.27175 * 15 14 13 31 31 H 1.09006 * 108.34312 * 204.28460 * 16 15 14 32 32 H 1.09010 * 109.02106 * 296.27346 * 17 16 15 33 33 H 1.09001 * 108.96173 * 177.41638 * 17 16 15 34 34 H 1.08993 * 109.03454 * 206.45905 * 18 13 12 35 35 H 1.09008 * 109.03515 * 325.31683 * 18 13 12 36 36 H 0.96701 * 113.99887 * 182.89750 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 1 3.6078 -3.1781 0.8495 12 6 3.6253 -3.3261 -1.2974 13 7 4.0817 -4.6914 -1.3504 14 6 3.8900 -5.4121 -0.0841 15 6 4.7866 -4.8207 0.9985 16 6 5.9814 -4.0941 0.3897 17 6 6.4821 -4.7985 -0.8633 18 6 5.3818 -4.9429 -1.9088 19 6 5.5697 -2.6505 0.0620 20 1 5.9855 -2.3529 -0.9007 21 8 6.0256 -1.7664 1.0881 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6798 -0.8895 24 1 3.8745 -0.6809 0.8904 25 1 2.5392 -3.3125 -1.3876 26 1 4.0548 -2.7771 -2.1355 27 1 2.8479 -5.3291 0.2245 28 1 4.1399 -6.4636 -0.2256 29 1 5.1465 -5.6234 1.6419 30 1 4.2070 -4.1169 1.5959 31 1 6.7831 -4.0738 1.1280 32 1 6.8468 -5.7893 -0.5921 33 1 7.3035 -4.2222 -1.2892 34 1 5.4056 -5.9551 -2.3124 35 1 5.5646 -4.2349 -2.7172 36 1 5.7585 -0.8457 0.9612 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260808769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:31 Heat of formation + Delta-G solvation = -63.394164 kcal Electronic energy + Delta-G solvation = -16910.708078 eV Core-core repulsion = 14393.701373 eV Total energy + Delta-G solvation = -2517.006705 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.04811 -37.65305 -35.69905 -34.01803 -33.40304 -31.98610 -29.79743 -26.02638 -25.50592 -24.12610 -23.16931 -20.75902 -19.51852 -18.83642 -18.24253 -17.44283 -16.63585 -16.07960 -15.91645 -15.43236 -14.85590 -14.51792 -14.44727 -13.87635 -13.77971 -13.35957 -13.20741 -13.02287 -12.81432 -12.64099 -12.44146 -11.91827 -11.84835 -11.71119 -11.52578 -11.41980 -11.00189 -10.86591 -10.73999 -10.41299 -8.84582 -8.26622 -6.29674 1.35699 1.37138 1.47688 2.36389 3.06896 3.14176 3.26162 3.60871 3.82942 4.05079 4.10701 4.21855 4.25904 4.32092 4.40163 4.54540 4.58612 4.67511 4.82368 4.92223 5.00674 5.01750 5.05112 5.16439 5.19374 5.29593 5.32129 5.36035 5.40010 5.66444 5.68127 6.28534 6.40462 6.65025 6.73936 6.78702 7.33747 8.89860 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037049 B = 0.009160 C = 0.008254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.577593 B = 3055.965849 C = 3391.286676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.243 1.243 6 H -0.288 1.288 7 C -0.516 4.516 8 H 0.033 0.967 9 C -0.004 4.004 10 C -0.144 4.144 11 H 0.081 0.919 12 C 0.104 3.896 13 N -0.580 5.580 14 C 0.074 3.926 15 C -0.153 4.153 16 C -0.076 4.076 17 C -0.137 4.137 18 C 0.076 3.924 19 C 0.108 3.892 20 H 0.056 0.944 21 O -0.580 6.580 22 H 0.264 0.736 23 H 0.018 0.982 24 H 0.021 0.979 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.562 -8.629 -1.924 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.772 3.228 4 H -0.194 1.194 5 H -0.166 1.166 6 H -0.214 1.214 7 C -0.554 4.554 8 H 0.051 0.949 9 C -0.042 4.042 10 C -0.164 4.164 11 H 0.099 0.901 12 C -0.024 4.024 13 N -0.301 5.301 14 C -0.053 4.053 15 C -0.192 4.192 16 C -0.095 4.095 17 C -0.176 4.176 18 C -0.052 4.052 19 C 0.049 3.951 20 H 0.074 0.926 21 O -0.388 6.388 22 H 0.073 0.927 23 H 0.036 0.964 24 H 0.039 0.961 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 14.413 -9.253 -2.027 17.247 hybrid contribution -0.305 1.916 0.468 1.996 sum 14.108 -7.336 -1.559 15.977 Atomic orbital electron populations 1.70078 1.08317 1.27933 1.53009 1.26011 0.95570 1.03427 0.94446 0.85688 0.79655 0.78446 0.79008 1.19419 1.16643 1.21438 1.21331 0.91627 0.92872 1.49563 0.94887 1.19477 0.94499 0.94113 0.96131 1.22939 0.95533 0.97742 1.00204 0.90110 1.20944 0.99461 0.86156 0.95859 1.57563 1.28675 1.14692 1.29202 1.21789 0.98596 0.98020 0.86912 1.22280 0.97149 1.00341 0.99437 1.20887 0.98042 0.91918 0.98685 1.21863 0.99200 1.01596 0.94986 1.21408 0.84989 1.02737 0.96044 1.22631 0.92226 0.90576 0.89627 0.92569 1.86356 1.78694 1.22901 1.50886 0.92709 0.96391 0.96114 0.93474 0.92262 0.92771 0.88871 0.90304 0.92317 0.90702 0.89653 0.90922 0.89237 0.91616 0.76643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 2 C 0.00 0.10 5.47 84.66 0.46 0.57 16 3 Si 0.95 43.79 27.47 68.60 1.88 45.67 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 6 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 7 C -0.52 -29.23 8.96 25.60 0.23 -29.00 16 8 H 0.03 2.08 7.30 -2.91 -0.02 2.06 16 9 C 0.00 -0.20 3.04 29.85 0.09 -0.11 16 10 C -0.14 -5.56 1.74 -10.43 -0.02 -5.58 16 11 H 0.08 3.38 4.44 -2.39 -0.01 3.37 16 12 C 0.10 3.86 4.81 86.52 0.42 4.28 16 13 N -0.58 -17.48 4.36 -915.89 -3.99 -21.47 16 14 C 0.07 2.07 5.47 86.13 0.47 2.54 16 15 C -0.15 -4.26 5.24 30.27 0.16 -4.10 16 16 C -0.08 -2.07 2.79 -11.00 -0.03 -2.10 16 17 C -0.14 -2.91 5.21 30.16 0.16 -2.75 16 18 C 0.08 1.76 5.91 86.72 0.51 2.28 16 19 C 0.11 3.48 2.89 31.49 0.09 3.57 16 20 H 0.06 1.74 7.54 -2.38 -0.02 1.72 16 21 O -0.58 -19.45 13.05 -148.98 -1.94 -21.40 16 22 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 23 H 0.02 0.79 7.20 -2.39 -0.02 0.78 16 24 H 0.02 0.91 6.12 -2.39 -0.01 0.90 16 25 H 0.05 2.11 6.90 -2.39 -0.02 2.10 16 26 H 0.06 2.14 7.61 -2.39 -0.02 2.12 16 27 H 0.05 1.71 8.14 -2.38 -0.02 1.70 16 28 H 0.09 2.09 8.09 -2.39 -0.02 2.07 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.98 5.40 -2.39 -0.01 1.96 16 31 H 0.07 2.03 7.97 -2.38 -0.02 2.01 16 32 H 0.08 1.47 8.14 -2.38 -0.02 1.46 16 33 H 0.07 1.42 8.11 -2.39 -0.02 1.40 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.51 7.70 -2.38 -0.02 1.49 16 36 H 0.38 11.63 7.22 -74.06 -0.53 11.10 16 Total: -1.00 -65.32 263.59 -0.73 -66.06 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.48 Total: 21.13 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 2.54 Total: -30.39 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -3.69 Total: -81.07 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -1.94 Total: -21.40 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Total: -65.32 -0.73 -66.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260808769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.665 kcal (2) G-P(sol) polarization free energy of solvation -65.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds