Wall clock time and date at job start Mon Mar 30 2020 02:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00312 * 2 1 4 4 H 1.48497 * 109.47032 * 240.00031 * 3 2 1 5 5 H 1.48508 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47383 * 119.99625 * 3 2 1 7 7 C 1.37875 * 119.99417 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00399 * 0.02562 * 7 2 1 10 10 C 1.53980 * 109.47083 * 179.97438 * 9 7 2 11 11 H 1.09034 * 107.27314 * 303.93483 * 10 9 7 12 12 C 1.52414 * 108.48645 * 62.82618 * 10 9 7 13 13 N 1.45812 * 112.36359 * 167.46369 * 12 10 9 14 14 C 1.45771 * 114.08645 * 70.08890 * 13 12 10 15 15 C 1.52173 * 112.71619 * 288.53355 * 14 13 12 16 16 C 1.52141 * 112.93457 * 314.57706 * 15 14 13 17 17 C 1.52361 * 112.63869 * 44.16906 * 16 15 14 18 18 H 1.10081 * 108.66771 * 189.20037 * 17 16 15 19 19 C 1.46532 * 111.91961 * 301.48280 * 13 12 10 20 20 C 1.52358 * 111.56372 * 69.42137 * 17 16 15 21 21 H 1.09862 * 108.89394 * 51.65995 * 20 17 16 22 22 O 1.43360 * 109.41966 * 169.37677 * 20 17 16 23 23 H 0.97003 * 119.99846 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47017 * 59.99993 * 9 7 2 25 25 H 1.08997 * 109.46771 * 299.99763 * 9 7 2 26 26 H 1.09597 * 109.08700 * 288.88878 * 12 10 9 27 27 H 1.09644 * 109.02666 * 46.21612 * 12 10 9 28 28 H 1.09722 * 109.19463 * 49.91206 * 14 13 12 29 29 H 1.09711 * 109.21832 * 167.09118 * 14 13 12 30 30 H 1.10658 * 107.83466 * 195.43541 * 15 14 13 31 31 H 1.08742 * 110.84178 * 79.70951 * 15 14 13 32 32 H 1.09743 * 109.17576 * 282.88579 * 16 15 14 33 33 H 1.09693 * 109.24791 * 165.63080 * 16 15 14 34 34 H 1.08907 * 109.86135 * 184.06217 * 19 13 12 35 35 H 1.08811 * 109.98361 * 305.10368 * 19 13 12 36 36 H 0.96701 * 114.00405 * 181.66743 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2515 -3.6696 0.0005 11 1 2.9036 -3.5380 -0.8633 12 6 3.0673 -3.6079 1.2865 13 7 3.8326 -4.8275 1.5169 14 6 4.9439 -5.0161 0.5925 15 6 4.4843 -5.3700 -0.8143 16 6 3.3984 -6.4355 -0.8328 17 6 2.3202 -6.1922 0.2158 18 1 1.6653 -7.0760 0.2593 19 6 2.9696 -6.0094 1.5896 20 6 1.4721 -4.9734 -0.1255 21 1 1.1089 -5.0704 -1.1578 22 8 0.3307 -4.9292 0.7409 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 3.7520 -2.7537 1.2359 27 1 2.3895 -3.4416 2.1321 28 1 5.5409 -4.0963 0.5537 29 1 5.5953 -5.8145 0.9690 30 1 5.3580 -5.7648 -1.3670 31 1 4.1643 -4.4807 -1.3520 32 1 3.8544 -7.4180 -0.6562 33 1 2.9345 -6.4617 -1.8265 34 1 3.5652 -6.8880 1.8333 35 1 2.2009 -5.8626 2.3457 36 1 -0.2692 -4.1917 0.5639 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260876922.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:40 Heat of formation + Delta-G solvation = -85.933632 kcal Electronic energy + Delta-G solvation = -16850.891417 eV Core-core repulsion = 14332.907327 eV Total energy + Delta-G solvation = -2517.984090 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.59225 -37.53497 -35.62999 -34.06738 -33.01054 -32.13331 -28.67193 -26.82963 -25.45512 -23.97070 -23.01314 -21.18379 -19.41958 -18.70138 -17.70392 -17.04751 -16.56928 -16.06375 -15.78507 -15.38669 -15.02476 -14.41823 -14.29640 -13.90365 -13.56080 -13.25605 -13.10427 -12.88881 -12.71791 -12.61003 -12.48284 -12.33283 -11.90439 -11.75284 -11.43605 -11.36599 -11.11503 -10.74701 -10.59513 -10.51435 -8.86047 -8.20298 -6.29080 1.39002 1.40921 1.48490 2.39894 3.11774 3.18182 3.26316 3.79412 3.82666 4.05114 4.11544 4.16735 4.25408 4.34071 4.48279 4.53245 4.66661 4.79421 4.82290 4.95629 5.00221 5.02587 5.14598 5.19562 5.21069 5.27422 5.34459 5.44719 5.44971 5.68459 5.79743 6.22683 6.33458 6.49284 6.71124 6.84761 7.39200 8.91029 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035750 B = 0.008742 C = 0.007832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.035793 B = 3202.203700 C = 3574.398449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.132 4.132 11 H 0.065 0.935 12 C 0.102 3.898 13 N -0.557 5.557 14 C 0.066 3.934 15 C -0.156 4.156 16 C -0.098 4.098 17 C -0.113 4.113 18 H 0.082 0.918 19 C 0.076 3.924 20 C 0.121 3.879 21 H 0.034 0.966 22 O -0.583 6.583 23 H 0.262 0.738 24 H -0.012 1.012 25 H 0.001 0.999 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.200 -12.318 -0.646 14.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.005 4.005 10 C -0.152 4.152 11 H 0.084 0.916 12 C -0.027 4.027 13 N -0.278 5.278 14 C -0.062 4.062 15 C -0.195 4.195 16 C -0.136 4.136 17 C -0.133 4.133 18 H 0.100 0.900 19 C -0.052 4.052 20 C 0.062 3.938 21 H 0.052 0.948 22 O -0.391 6.391 23 H 0.071 0.929 24 H 0.006 0.994 25 H 0.020 0.980 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 8.564 -12.680 0.034 15.301 hybrid contribution -0.859 1.821 -1.183 2.336 sum 7.705 -10.858 -1.149 13.363 Atomic orbital electron populations 1.70063 1.07564 1.27671 1.51757 1.25876 0.95701 1.02975 0.94971 0.85618 0.78384 0.78731 0.79055 1.19379 1.20991 1.19354 1.21505 0.93240 0.91925 1.50125 0.92414 1.19207 0.94010 0.92658 0.94634 1.22214 0.98575 0.95065 0.99341 0.91637 1.21385 0.95086 0.91039 0.95150 1.60220 1.12885 1.02978 1.51697 1.21794 0.92479 1.02265 0.89626 1.21987 0.99696 0.99187 0.98608 1.21176 0.94937 0.99576 0.97903 1.21471 0.96837 0.96527 0.98421 0.89971 1.21901 0.95385 0.92927 0.95004 1.21727 0.85943 0.94555 0.91589 0.94772 1.86367 1.36851 1.54258 1.61647 0.92886 0.99409 0.98034 0.92434 0.93664 0.91825 0.89033 0.89994 0.93541 0.89190 0.92125 0.88464 0.92026 0.76904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 2 C 0.00 0.15 5.46 84.65 0.46 0.62 16 3 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.53 -29.42 8.48 25.60 0.22 -29.20 16 8 H 0.06 3.11 6.90 -2.91 -0.02 3.09 16 9 C 0.03 1.65 3.40 30.18 0.10 1.76 16 10 C -0.13 -5.38 1.58 -10.85 -0.02 -5.40 16 11 H 0.07 2.73 5.59 -2.37 -0.01 2.71 16 12 C 0.10 4.01 4.65 86.31 0.40 4.42 16 13 N -0.56 -17.67 4.78 -902.36 -4.31 -21.98 16 14 C 0.07 1.72 5.76 86.24 0.50 2.21 16 15 C -0.16 -3.81 5.10 30.04 0.15 -3.66 16 16 C -0.10 -2.28 5.37 30.10 0.16 -2.11 16 17 C -0.11 -3.20 2.59 -11.20 -0.03 -3.22 16 18 H 0.08 2.18 8.23 -1.81 -0.01 2.17 16 19 C 0.08 2.16 5.62 86.39 0.49 2.65 16 20 C 0.12 4.34 2.72 30.19 0.08 4.42 16 21 H 0.03 1.24 8.20 -1.93 -0.02 1.22 16 22 O -0.58 -22.60 12.75 -148.98 -1.90 -24.50 16 23 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 24 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 25 H 0.00 0.08 6.85 -2.39 -0.02 0.06 16 26 H 0.06 2.42 7.05 -2.07 -0.01 2.41 16 27 H 0.04 1.99 8.03 -2.04 -0.02 1.97 16 28 H 0.06 1.71 8.11 -2.00 -0.02 1.70 16 29 H 0.09 1.91 8.20 -2.01 -0.02 1.89 16 30 H 0.08 1.57 8.28 -1.49 -0.01 1.56 16 31 H 0.05 1.37 5.76 -2.52 -0.01 1.36 16 32 H 0.09 1.61 8.20 -1.99 -0.02 1.59 16 33 H 0.06 1.39 8.19 -2.02 -0.02 1.37 16 34 H 0.10 2.21 8.13 -2.44 -0.02 2.19 16 35 H 0.06 1.99 7.93 -2.49 -0.02 1.97 16 36 H 0.38 14.97 7.00 -74.06 -0.52 14.45 16 Total: -1.00 -62.01 269.51 -0.82 -62.83 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.57 Total: 20.47 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 2.52 Total: -27.53 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -4.03 Total: -77.42 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -1.90 Total: -24.50 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -62.01 -0.82 -62.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260876922.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.106 kcal (2) G-P(sol) polarization free energy of solvation -62.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds