Wall clock time and date at job start Mon Mar 30 2020 02:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47544 * 269.99883 * 3 2 1 5 5 H 1.48502 * 109.47144 * 30.00404 * 3 2 1 6 6 H 1.48507 * 109.47025 * 149.99795 * 3 2 1 7 7 C 1.37874 * 119.99645 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00023 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.53192 * 109.47035 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.04510 * 54.96743 * 10 9 7 12 12 C 1.52884 * 109.32382 * 294.99985 * 10 9 7 13 13 N 1.46536 * 110.41250 * 184.60661 * 12 10 9 14 14 C 1.46755 * 111.56885 * 120.81681 * 13 12 10 15 15 C 1.52875 * 110.15474 * 295.24823 * 14 13 12 16 16 C 1.52960 * 110.00891 * 303.32503 * 15 14 13 17 17 C 1.53113 * 109.60592 * 55.67697 * 16 15 14 18 18 H 1.08994 * 109.68418 * 182.33613 * 17 16 15 19 19 C 1.46718 * 111.93318 * 355.53920 * 13 12 10 20 20 C 1.52996 * 109.52022 * 61.84087 * 17 16 15 21 21 H 1.09032 * 109.73051 * 0.39120 * 20 17 16 22 22 O 1.43037 * 109.45540 * 120.15386 * 20 17 16 23 23 H 0.97000 * 119.99819 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46577 * 60.00074 * 9 7 2 25 25 H 1.08994 * 109.47027 * 300.00289 * 9 7 2 26 26 H 1.09265 * 109.18977 * 64.39590 * 12 10 9 27 27 H 1.09083 * 109.42983 * 305.43743 * 12 10 9 28 28 H 1.09140 * 109.34655 * 55.48389 * 14 13 12 29 29 H 1.09103 * 109.39945 * 174.89931 * 14 13 12 30 30 H 1.09310 * 109.18773 * 183.52365 * 15 14 13 31 31 H 1.08937 * 109.78684 * 64.26775 * 15 14 13 32 32 H 1.09093 * 109.50889 * 295.64605 * 16 15 14 33 33 H 1.09066 * 109.55895 * 175.82256 * 16 15 14 34 34 H 1.09224 * 109.26586 * 181.68447 * 19 13 12 35 35 H 1.08731 * 110.16291 * 301.69165 * 19 13 12 36 36 H 0.96706 * 114.00046 * 180.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2463 -3.6636 0.0005 11 1 2.9270 -3.5496 0.8442 12 6 3.0385 -3.6519 -1.3070 13 7 3.9213 -4.8192 -1.3802 14 6 3.6235 -5.6480 -2.5541 15 6 2.2210 -6.2446 -2.4358 16 6 2.1008 -7.0458 -1.1384 17 6 2.4631 -6.1536 0.0520 18 1 2.4180 -6.7343 0.9732 19 6 3.8824 -5.6138 -0.1474 20 6 1.4815 -4.9827 0.1306 21 1 0.7500 -5.0609 -0.6742 22 8 0.8009 -5.0152 1.3883 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6239 -2.5567 0.8902 26 1 3.6396 -2.7407 -1.3546 27 1 2.3468 -3.6607 -2.1504 28 1 3.6811 -5.0337 -3.4544 29 1 4.3561 -6.4535 -2.6243 30 1 2.0397 -6.9077 -3.2856 31 1 1.4789 -5.4471 -2.4471 32 1 2.7805 -7.8985 -1.1725 33 1 1.0775 -7.4057 -1.0250 34 1 4.5759 -6.4528 -0.2374 35 1 4.1705 -5.0006 0.7030 36 1 0.1608 -4.3002 1.5077 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260876934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:45 Heat of formation + Delta-G solvation = -64.827026 kcal Electronic energy + Delta-G solvation = -16735.587888 eV Core-core repulsion = 14218.519049 eV Total energy + Delta-G solvation = -2517.068839 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.43339 -36.17851 -34.05004 -32.50849 -31.63938 -30.45638 -26.80651 -25.29800 -23.83222 -22.54808 -21.64490 -19.80547 -17.69253 -17.39550 -16.20372 -15.44517 -15.00777 -14.73033 -14.41731 -13.96816 -13.48968 -13.31719 -12.51069 -12.24365 -12.08615 -11.81772 -11.62506 -11.47262 -11.08821 -11.02041 -10.81934 -10.75112 -10.68220 -10.33637 -10.10263 -9.80203 -9.42995 -9.27161 -8.89399 -8.40735 -7.63054 -6.04689 -4.06483 3.30469 3.37106 3.40952 4.37475 4.43409 4.64402 4.91167 5.07839 5.10528 5.27236 5.31706 5.49121 5.56074 5.68634 5.70791 5.83727 5.86146 5.97627 6.02976 6.07185 6.14143 6.23102 6.28789 6.41502 6.50549 6.71264 6.90158 6.98505 7.44854 7.57498 7.62138 7.67077 7.92862 8.20688 8.36556 8.98966 9.58040 11.06535 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037219 B = 0.008223 C = 0.007487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.125319 B = 3404.253156 C = 3739.015012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.029 3.971 10 C -0.130 4.130 11 H 0.072 0.928 12 C 0.072 3.928 13 N -0.542 5.542 14 C 0.058 3.942 15 C -0.160 4.160 16 C -0.108 4.108 17 C -0.120 4.120 18 H 0.082 0.918 19 C 0.066 3.934 20 C 0.113 3.887 21 H 0.048 0.952 22 O -0.576 6.576 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.017 0.983 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 -11.788 -3.112 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.149 4.149 11 H 0.090 0.910 12 C -0.055 4.055 13 N -0.264 5.264 14 C -0.071 4.071 15 C -0.199 4.199 16 C -0.145 4.145 17 C -0.140 4.140 18 H 0.100 0.900 19 C -0.062 4.062 20 C 0.055 3.945 21 H 0.065 0.935 22 O -0.384 6.384 23 H 0.070 0.930 24 H 0.033 0.967 25 H 0.035 0.965 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 5.082 -12.002 -3.095 13.396 hybrid contribution -0.908 1.198 -0.026 1.503 sum 4.174 -10.804 -3.121 11.995 Atomic orbital electron populations 1.69951 1.06056 1.26670 1.50858 1.25015 0.94834 0.99288 0.95269 0.86600 0.79912 0.83451 0.78115 1.20677 1.21281 1.19807 1.21185 0.93078 0.90628 1.50457 0.92380 1.19151 0.93487 0.91361 0.96887 1.22196 0.99208 0.95589 0.97919 0.91002 1.22079 0.93920 0.92471 0.97030 1.61934 1.53485 1.08625 1.02376 1.22134 0.94453 0.96554 0.93938 1.22186 0.99743 1.00407 0.97607 1.21532 1.01279 0.97497 0.94215 1.21803 0.96609 0.96618 0.98949 0.89982 1.22017 0.94057 0.96850 0.93315 1.21961 0.92840 0.94469 0.85263 0.93456 1.86386 1.59114 1.55096 1.37810 0.92996 0.96731 0.96531 0.89868 0.93061 0.91010 0.91379 0.91985 0.91347 0.92053 0.92149 0.91437 0.90145 0.76937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.06 8.46 -34.44 -0.29 -14.35 16 8 H 0.06 1.56 7.04 -52.49 -0.37 1.19 16 9 C 0.03 0.70 4.31 -27.78 -0.12 0.58 16 10 C -0.13 -2.62 1.58 -90.56 -0.14 -2.77 16 11 H 0.07 1.55 6.94 -51.93 -0.36 1.19 16 12 C 0.07 1.36 4.95 -4.08 -0.02 1.34 16 13 N -0.54 -8.74 5.09 -235.02 -1.20 -9.94 16 14 C 0.06 0.78 5.59 -3.97 -0.02 0.76 16 15 C -0.16 -2.10 5.44 -26.82 -0.15 -2.25 16 16 C -0.11 -1.41 5.31 -26.69 -0.14 -1.55 16 17 C -0.12 -1.83 3.07 -90.49 -0.28 -2.11 16 18 H 0.08 1.27 7.91 -51.93 -0.41 0.86 16 19 C 0.07 1.00 5.36 -3.85 -0.02 0.98 16 20 C 0.11 2.04 2.52 -26.72 -0.07 1.97 16 21 H 0.05 0.87 6.39 -51.91 -0.33 0.54 16 22 O -0.58 -10.79 13.17 -35.23 -0.46 -11.25 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.02 0.43 6.60 -51.93 -0.34 0.08 16 26 H 0.08 1.73 7.07 -51.78 -0.37 1.37 16 27 H 0.05 0.98 6.54 -51.88 -0.34 0.64 16 28 H 0.07 0.95 8.15 -51.85 -0.42 0.52 16 29 H 0.07 0.81 8.15 -51.87 -0.42 0.39 16 30 H 0.06 0.69 8.17 -51.75 -0.42 0.27 16 31 H 0.07 1.03 5.54 -51.96 -0.29 0.74 16 32 H 0.06 0.71 8.15 -51.88 -0.42 0.28 16 33 H 0.06 0.79 8.15 -51.89 -0.42 0.36 16 34 H 0.07 0.89 8.15 -51.80 -0.42 0.46 16 35 H 0.08 1.30 6.85 -52.08 -0.36 0.95 16 36 H 0.38 6.73 7.36 45.56 0.34 7.06 16 LS Contribution 268.04 15.07 4.04 4.04 Total: -1.00 -29.00 268.04 -8.17 -37.18 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -4.92 Total: 4.96 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -1.35 Total: -15.90 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: -0.46 Total: -35.47 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.46 Total: -11.25 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.00 -8.17 -37.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260876934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.651 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds