Wall clock time and date at job start Mon Mar 30 2020 02:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47544 * 269.99883 * 3 2 1 5 5 H 1.48502 * 109.47144 * 30.00404 * 3 2 1 6 6 H 1.48507 * 109.47025 * 149.99795 * 3 2 1 7 7 C 1.37874 * 119.99645 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00023 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.53192 * 109.47035 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.04510 * 54.96743 * 10 9 7 12 12 C 1.52884 * 109.32382 * 294.99985 * 10 9 7 13 13 N 1.46536 * 110.41250 * 184.60661 * 12 10 9 14 14 C 1.46755 * 111.56885 * 120.81681 * 13 12 10 15 15 C 1.52875 * 110.15474 * 295.24823 * 14 13 12 16 16 C 1.52960 * 110.00891 * 303.32503 * 15 14 13 17 17 C 1.53113 * 109.60592 * 55.67697 * 16 15 14 18 18 H 1.08994 * 109.68418 * 182.33613 * 17 16 15 19 19 C 1.46718 * 111.93318 * 355.53920 * 13 12 10 20 20 C 1.52996 * 109.52022 * 61.84087 * 17 16 15 21 21 H 1.09032 * 109.73051 * 0.39120 * 20 17 16 22 22 O 1.43037 * 109.45540 * 120.15386 * 20 17 16 23 23 H 0.97000 * 119.99819 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46577 * 60.00074 * 9 7 2 25 25 H 1.08994 * 109.47027 * 300.00289 * 9 7 2 26 26 H 1.09265 * 109.18977 * 64.39590 * 12 10 9 27 27 H 1.09083 * 109.42983 * 305.43743 * 12 10 9 28 28 H 1.09140 * 109.34655 * 55.48389 * 14 13 12 29 29 H 1.09103 * 109.39945 * 174.89931 * 14 13 12 30 30 H 1.09310 * 109.18773 * 183.52365 * 15 14 13 31 31 H 1.08937 * 109.78684 * 64.26775 * 15 14 13 32 32 H 1.09093 * 109.50889 * 295.64605 * 16 15 14 33 33 H 1.09066 * 109.55895 * 175.82256 * 16 15 14 34 34 H 1.09224 * 109.26586 * 181.68447 * 19 13 12 35 35 H 1.08731 * 110.16291 * 301.69165 * 19 13 12 36 36 H 0.96706 * 114.00046 * 180.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2463 -3.6636 0.0005 11 1 2.9270 -3.5496 0.8442 12 6 3.0385 -3.6519 -1.3070 13 7 3.9213 -4.8192 -1.3802 14 6 3.6235 -5.6480 -2.5541 15 6 2.2210 -6.2446 -2.4358 16 6 2.1008 -7.0458 -1.1384 17 6 2.4631 -6.1536 0.0520 18 1 2.4180 -6.7343 0.9732 19 6 3.8824 -5.6138 -0.1474 20 6 1.4815 -4.9827 0.1306 21 1 0.7500 -5.0609 -0.6742 22 8 0.8009 -5.0152 1.3883 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6239 -2.5567 0.8902 26 1 3.6396 -2.7407 -1.3546 27 1 2.3468 -3.6607 -2.1504 28 1 3.6811 -5.0337 -3.4544 29 1 4.3561 -6.4535 -2.6243 30 1 2.0397 -6.9077 -3.2856 31 1 1.4789 -5.4471 -2.4471 32 1 2.7805 -7.8985 -1.1725 33 1 1.0775 -7.4057 -1.0250 34 1 4.5759 -6.4528 -0.2374 35 1 4.1705 -5.0006 0.7030 36 1 0.1608 -4.3002 1.5077 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260876934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:45 Heat of formation + Delta-G solvation = -85.885594 kcal Electronic energy + Delta-G solvation = -16736.501056 eV Core-core repulsion = 14218.519049 eV Total energy + Delta-G solvation = -2517.982007 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.76802 -37.63718 -35.82120 -34.17294 -33.06274 -31.87569 -28.64229 -26.63516 -25.47380 -24.04122 -22.94445 -21.32017 -19.07492 -19.04543 -18.09590 -16.83425 -16.64916 -16.19708 -15.90163 -15.37319 -14.88768 -14.62520 -14.23503 -13.83902 -13.39793 -13.33017 -13.27371 -12.97538 -12.74189 -12.55125 -12.52425 -12.17014 -12.02016 -11.77955 -11.66651 -11.38307 -11.23817 -10.86854 -10.61868 -10.55367 -8.95052 -8.21103 -6.30056 1.39310 1.39610 1.50815 2.39964 3.07114 3.15304 3.29228 3.69985 3.83452 3.98478 4.11655 4.13573 4.21861 4.27412 4.45249 4.51066 4.64908 4.71666 4.83052 4.90555 4.93870 5.04152 5.07458 5.11842 5.15342 5.26354 5.34093 5.40347 5.42045 5.65523 5.79224 6.20379 6.24791 6.33607 6.70157 6.84131 7.38503 8.90266 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037219 B = 0.008223 C = 0.007487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.125319 B = 3404.253156 C = 3739.015012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.117 4.117 11 H 0.057 0.943 12 C 0.084 3.916 13 N -0.546 5.546 14 C 0.055 3.945 15 C -0.158 4.158 16 C -0.103 4.103 17 C -0.116 4.116 18 H 0.085 0.915 19 C 0.066 3.934 20 C 0.115 3.885 21 H 0.042 0.958 22 O -0.582 6.582 23 H 0.263 0.737 24 H -0.010 1.010 25 H -0.002 1.002 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.794 -13.171 -3.739 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.136 4.136 11 H 0.075 0.925 12 C -0.044 4.044 13 N -0.268 5.268 14 C -0.073 4.073 15 C -0.197 4.197 16 C -0.140 4.140 17 C -0.136 4.136 18 H 0.104 0.896 19 C -0.063 4.063 20 C 0.056 3.944 21 H 0.060 0.940 22 O -0.390 6.390 23 H 0.071 0.929 24 H 0.008 0.992 25 H 0.017 0.983 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 6.514 -13.402 -3.725 15.360 hybrid contribution -1.367 1.604 0.170 2.114 sum 5.147 -11.799 -3.555 13.354 Atomic orbital electron populations 1.70070 1.07562 1.27643 1.51828 1.25876 0.95702 1.02996 0.94910 0.85545 0.78720 0.78980 0.78434 1.19859 1.20819 1.19055 1.21540 0.93275 0.91932 1.50052 0.92453 1.19004 0.93766 0.92650 0.94731 1.21993 0.98095 0.95303 0.98256 0.92465 1.21782 0.93487 0.93326 0.95766 1.61885 1.52382 1.08619 1.03911 1.22270 0.95486 0.96920 0.92579 1.22158 0.98611 1.00091 0.98827 1.21535 1.02122 0.97667 0.92713 1.21824 0.95723 0.95640 1.00441 0.89636 1.22079 0.94567 0.97358 0.92255 1.22032 0.93056 0.94512 0.84792 0.93996 1.86380 1.59214 1.55148 1.38297 0.92852 0.99158 0.98336 0.92392 0.93720 0.90946 0.88551 0.89304 0.94039 0.89163 0.92066 0.88190 0.91834 0.76842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 2 C 0.00 0.17 5.46 84.65 0.46 0.64 16 3 Si 0.96 44.39 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.53 -29.70 8.46 25.60 0.22 -29.49 16 8 H 0.06 3.15 7.04 -2.91 -0.02 3.13 16 9 C 0.04 1.85 4.31 29.91 0.13 1.98 16 10 C -0.12 -4.85 1.58 -10.76 -0.02 -4.87 16 11 H 0.06 2.54 6.94 -2.39 -0.02 2.52 16 12 C 0.08 3.22 4.95 86.33 0.43 3.65 16 13 N -0.55 -16.72 5.09 -897.47 -4.56 -21.29 16 14 C 0.06 1.33 5.59 86.29 0.48 1.81 16 15 C -0.16 -3.71 5.44 30.54 0.17 -3.55 16 16 C -0.10 -2.36 5.31 30.62 0.16 -2.19 16 17 C -0.12 -3.33 3.07 -10.71 -0.03 -3.36 16 18 H 0.09 2.43 7.91 -2.39 -0.02 2.41 16 19 C 0.07 1.84 5.36 86.39 0.46 2.30 16 20 C 0.11 4.14 2.52 30.60 0.08 4.21 16 21 H 0.04 1.57 6.39 -2.37 -0.02 1.55 16 22 O -0.58 -22.01 13.17 -148.98 -1.96 -23.97 16 23 H 0.26 14.88 8.31 -92.71 -0.77 14.10 16 24 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 25 H 0.00 -0.08 6.60 -2.39 -0.02 -0.10 16 26 H 0.06 2.48 7.07 -2.25 -0.02 2.47 16 27 H 0.04 1.74 6.54 -2.34 -0.02 1.73 16 28 H 0.07 1.74 8.15 -2.31 -0.02 1.73 16 29 H 0.10 1.85 8.15 -2.33 -0.02 1.83 16 30 H 0.09 1.64 8.17 -2.22 -0.02 1.63 16 31 H 0.04 1.20 5.54 -2.42 -0.01 1.19 16 32 H 0.09 1.61 8.15 -2.34 -0.02 1.59 16 33 H 0.06 1.42 8.15 -2.35 -0.02 1.40 16 34 H 0.10 2.21 8.15 -2.27 -0.02 2.19 16 35 H 0.06 1.99 6.85 -2.53 -0.02 1.98 16 36 H 0.38 14.02 7.36 -74.05 -0.55 13.48 16 Total: -1.00 -62.72 268.04 -1.15 -63.87 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.52 Total: 19.35 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: 2.54 Total: -28.88 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -4.28 Total: -76.79 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -1.96 Total: -23.97 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -62.72 -1.15 -63.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260876934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.014 kcal (2) G-P(sol) polarization free energy of solvation -62.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds