Wall clock time and date at job start Mon Mar 30 2020 03:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00260 * 2 1 4 4 H 1.48503 * 109.47036 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47104 * 300.00335 * 3 2 1 6 6 H 1.48500 * 109.47137 * 60.00275 * 3 2 1 7 7 C 1.37879 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00143 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99964 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.05399 * 26.15813 * 9 7 2 11 11 C 1.54268 * 110.03359 * 264.74211 * 9 7 2 12 12 C 1.54887 * 104.19190 * 217.10577 * 11 9 7 13 13 C 1.54887 * 102.91755 * 37.85205 * 12 11 9 14 14 C 1.53869 * 110.02796 * 147.57306 * 9 7 2 15 15 H 1.09005 * 110.03428 * 238.61465 * 14 9 7 16 16 N 1.46892 * 110.03786 * 0.02562 * 14 9 7 17 17 C 1.47903 * 111.00068 * 286.69336 * 16 14 9 18 18 C 1.53994 * 107.06163 * 214.15664 * 17 16 14 19 19 C 1.54599 * 105.13655 * 1.22009 * 18 17 16 20 20 H 1.09002 * 110.72211 * 263.59922 * 19 18 17 21 21 O 1.42898 * 110.72126 * 140.49617 * 19 18 17 22 22 C 1.48537 * 111.00578 * 169.29633 * 16 14 9 23 23 H 0.97001 * 119.99710 * 359.97438 * 1 2 3 24 24 H 1.08997 * 110.48498 * 98.42885 * 11 9 7 25 25 H 1.09003 * 110.59777 * 335.84059 * 11 9 7 26 26 H 1.09005 * 110.75538 * 156.25803 * 12 11 9 27 27 H 1.08994 * 110.75896 * 279.44028 * 12 11 9 28 28 H 1.08998 * 110.49018 * 80.82850 * 13 12 11 29 29 H 1.09004 * 110.48323 * 203.46778 * 13 12 11 30 30 H 1.09007 * 109.91716 * 333.50808 * 17 16 14 31 31 H 1.08997 * 109.91937 * 94.59978 * 17 16 14 32 32 H 1.08995 * 110.31476 * 120.14035 * 18 17 16 33 33 H 1.08998 * 110.30380 * 242.21081 * 18 17 16 34 34 H 0.96705 * 113.99736 * 61.45495 * 21 19 18 35 35 H 1.09001 * 110.66327 * 278.15857 * 22 16 14 36 36 H 1.09004 * 110.66382 * 41.28340 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.2679 -2.3632 -0.4515 11 6 1.1022 -3.0236 1.4426 12 6 1.2514 -4.5592 1.3060 13 6 2.3473 -4.7054 0.2212 14 6 2.0438 -3.5656 -0.7763 15 1 1.4459 -3.9466 -1.6042 16 7 3.2971 -2.9912 -1.2831 17 6 3.0411 -2.0795 -2.4192 18 6 4.2349 -2.2121 -3.3829 19 6 5.1580 -3.2718 -2.7386 20 1 5.9491 -2.7940 -2.1607 21 8 5.7121 -4.1328 -3.7354 22 6 4.1944 -4.0516 -1.8092 23 1 -0.4850 0.8401 0.0004 24 1 0.1201 -2.7698 1.8414 25 1 1.8881 -2.6191 2.0805 26 1 1.5785 -5.0008 2.2474 27 1 0.3164 -5.0102 0.9738 28 1 3.3370 -4.5741 0.6585 29 1 2.2715 -5.6759 -0.2692 30 1 2.1205 -2.3679 -2.9266 31 1 2.9615 -1.0531 -2.0611 32 1 3.8953 -2.5510 -4.3616 33 1 4.7559 -1.2590 -3.4731 34 1 6.2621 -3.6770 -4.3873 35 1 4.7442 -4.5279 -0.9974 36 1 3.6266 -4.7897 -2.3757 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260996791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:28 Heat of formation + Delta-G solvation = -67.015842 kcal Electronic energy + Delta-G solvation = -16618.112547 eV Core-core repulsion = 14100.948794 eV Total energy + Delta-G solvation = -2517.163753 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.57577 -38.35750 -36.11099 -34.45840 -31.45664 -30.46622 -28.80345 -27.22049 -25.85960 -22.40854 -22.12832 -20.80543 -20.36121 -18.54334 -18.03521 -16.87973 -16.71396 -15.96859 -15.94630 -15.01707 -14.81599 -14.19071 -14.11399 -13.98757 -13.61244 -13.36838 -12.92056 -12.87268 -12.35834 -12.27629 -12.16013 -11.74820 -11.68444 -11.52864 -11.46849 -11.33410 -10.86606 -10.83430 -10.66845 -10.40014 -9.03004 -7.99204 -5.96810 1.40817 1.44790 1.55723 2.51541 3.01630 3.31545 3.51048 3.77706 3.94550 4.07749 4.10436 4.19052 4.33763 4.38812 4.62199 4.77776 4.82387 4.87321 4.93524 4.96710 5.03372 5.09779 5.13738 5.14798 5.32110 5.38506 5.44910 5.55203 5.73864 5.90323 5.97596 6.28629 6.33891 6.71457 6.91614 7.17030 7.63556 9.12493 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.021596 B = 0.012024 C = 0.008349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.205160 B = 2328.174504 C = 3352.886494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.002 4.002 3 Si 0.939 3.061 4 H -0.260 1.260 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.032 3.968 10 H 0.008 0.992 11 C -0.104 4.104 12 C -0.116 4.116 13 C -0.105 4.105 14 C 0.082 3.918 15 H 0.010 0.990 16 N -0.490 5.490 17 C 0.050 3.950 18 C -0.158 4.158 19 C 0.108 3.892 20 H 0.079 0.921 21 O -0.576 6.576 22 C 0.038 3.962 23 H 0.252 0.748 24 H 0.026 0.974 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.015 0.985 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.396 0.604 35 H 0.090 0.910 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.426 -7.174 -4.550 12.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.197 4.197 3 Si 0.767 3.233 4 H -0.184 1.184 5 H -0.214 1.214 6 H -0.218 1.218 7 C -0.503 4.503 8 H 0.094 0.906 9 C 0.013 3.987 10 H 0.027 0.973 11 C -0.143 4.143 12 C -0.154 4.154 13 C -0.143 4.143 14 C -0.026 4.026 15 H 0.028 0.972 16 N -0.214 5.214 17 C -0.078 4.078 18 C -0.196 4.196 19 C 0.049 3.951 20 H 0.097 0.903 21 O -0.384 6.384 22 C -0.090 4.090 23 H 0.061 0.939 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.033 0.967 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.247 0.753 35 H 0.108 0.892 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.214 -7.222 -3.794 12.306 hybrid contribution -0.512 1.321 -0.965 1.714 sum 8.701 -5.900 -4.759 11.540 Atomic orbital electron populations 1.70100 1.07395 1.26306 1.54741 1.25717 0.95335 1.02065 0.96627 0.85778 0.79786 0.80890 0.76893 1.18409 1.21407 1.21775 1.21486 0.93876 0.89944 1.44987 0.90638 1.19437 0.94146 0.93256 0.91824 0.97346 1.22337 0.98349 0.94694 0.98877 1.22438 0.98311 0.95801 0.98820 1.22403 0.99511 0.96356 0.96043 1.22567 0.89495 0.94894 0.95691 0.97224 1.64777 1.13785 1.13445 1.29435 1.22690 0.95580 0.99482 0.90036 1.23164 0.96879 1.00688 0.98881 1.22568 0.94400 0.89448 0.88713 0.90305 1.86422 1.70126 1.38519 1.43292 1.23155 0.94830 0.94033 0.97018 0.93874 0.95551 0.93610 0.90470 0.92099 0.90801 0.91129 0.96696 0.90875 0.90417 0.89789 0.75333 0.89193 0.94517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.61 12.83 21.45 0.28 -56.33 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.94 44.28 29.54 68.60 2.03 46.31 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 7 C -0.46 -24.76 5.20 25.60 0.13 -24.63 16 8 H 0.08 4.02 6.34 -2.91 -0.02 4.01 16 9 C 0.03 1.62 2.89 -10.82 -0.03 1.59 16 10 H 0.01 0.48 7.37 -2.38 -0.02 0.46 16 11 C -0.10 -4.69 6.35 31.67 0.20 -4.49 16 12 C -0.12 -4.03 6.90 31.88 0.22 -3.81 16 13 C -0.11 -3.59 5.49 31.74 0.17 -3.42 16 14 C 0.08 3.43 2.47 45.71 0.11 3.54 16 15 H 0.01 0.42 7.78 -2.38 -0.02 0.41 16 16 N -0.49 -19.13 3.62 -853.23 -3.09 -22.22 16 17 C 0.05 1.97 5.54 86.45 0.48 2.45 16 18 C -0.16 -4.58 6.69 31.47 0.21 -4.37 16 19 C 0.11 2.95 4.43 31.80 0.14 3.09 16 20 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 21 O -0.58 -13.74 13.41 -148.98 -2.00 -15.74 16 22 C 0.04 1.20 5.27 86.65 0.46 1.65 16 23 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 24 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.05 2.11 7.85 -2.39 -0.02 2.09 16 26 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.07 2.46 7.37 -2.39 -0.02 2.44 16 29 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.01 0.62 7.55 -2.38 -0.02 0.60 16 31 H 0.07 3.29 6.23 -2.39 -0.01 3.28 16 32 H 0.08 2.08 8.07 -2.39 -0.02 2.07 16 33 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.40 5.59 9.11 -74.05 -0.67 4.92 16 35 H 0.09 2.66 7.50 -2.39 -0.02 2.65 16 36 H 0.04 1.21 8.02 -2.38 -0.02 1.19 16 Total: -1.00 -63.35 277.77 0.16 -63.19 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.38 Total: 12.85 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 2.56 Total: -28.05 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -2.81 Total: -78.55 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -2.00 Total: -15.74 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -63.35 0.16 -63.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260996791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.825 kcal (2) G-P(sol) polarization free energy of solvation -63.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds