Wall clock time and date at job start Mon Mar 30 2020 03:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00402 * 2 1 4 4 H 1.48506 * 109.46855 * 270.00117 * 3 2 1 5 5 H 1.48496 * 109.47059 * 29.99646 * 3 2 1 6 6 H 1.48498 * 109.47552 * 150.00237 * 3 2 1 7 7 C 1.37882 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00235 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99576 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.06117 * 58.58367 * 9 7 2 11 11 C 1.53872 * 110.03590 * 297.16377 * 9 7 2 12 12 C 1.54266 * 106.60253 * 240.71807 * 11 9 7 13 13 C 1.54889 * 104.19309 * 336.38868 * 12 11 9 14 14 C 1.54269 * 110.03387 * 180.02562 * 9 7 2 15 15 H 1.09005 * 110.59619 * 24.15942 * 14 9 7 16 16 N 1.46904 * 110.48796 * 261.57753 * 14 9 7 17 17 C 1.48559 * 111.00066 * 63.63673 * 16 14 9 18 18 C 1.54387 * 104.58955 * 159.04379 * 17 16 14 19 19 C 1.54259 * 105.06271 * 336.15098 * 18 17 16 20 20 H 1.08991 * 110.32316 * 118.89554 * 19 18 17 21 21 O 1.42904 * 110.32034 * 241.10662 * 19 18 17 22 22 C 1.48560 * 111.00239 * 179.06197 * 16 14 9 23 23 H 0.97000 * 119.99838 * 359.97438 * 1 2 3 24 24 H 1.08996 * 110.03529 * 121.42880 * 11 9 7 25 25 H 1.09006 * 110.07229 * 0.02562 * 11 9 7 26 26 H 1.08996 * 110.48305 * 217.70689 * 12 11 9 27 27 H 1.08999 * 110.48509 * 95.06931 * 12 11 9 28 28 H 1.08997 * 110.75285 * 279.62177 * 13 12 11 29 29 H 1.09006 * 110.90948 * 156.33134 * 13 12 11 30 30 H 1.08999 * 110.40971 * 40.26912 * 17 16 14 31 31 H 1.08999 * 110.41180 * 277.82119 * 17 16 14 32 32 H 1.09000 * 110.32138 * 95.04641 * 18 17 16 33 33 H 1.09003 * 110.32046 * 217.14933 * 18 17 16 34 34 H 0.96702 * 113.99983 * 298.54066 * 21 19 18 35 35 H 1.09004 * 110.40940 * 82.17346 * 22 16 14 36 36 H 1.08996 * 110.50752 * 319.78735 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6014 -2.5558 -0.8741 11 6 0.4163 -2.6259 1.2859 12 6 0.9291 -3.8808 2.0221 13 6 1.5683 -4.7421 0.9047 14 6 2.2418 -3.6815 -0.0005 15 1 3.2016 -3.3775 0.4171 16 7 2.4175 -4.2051 -1.3618 17 6 3.0287 -3.1834 -2.2504 18 6 3.6339 -3.9942 -3.4165 19 6 3.8698 -5.4066 -2.8428 20 1 3.2860 -6.1422 -3.3960 21 8 5.2594 -5.7361 -2.8910 22 6 3.3873 -5.3304 -1.3784 23 1 -0.4850 0.8401 0.0004 24 1 -0.6382 -2.7440 1.0368 25 1 0.5554 -1.7435 1.9107 26 1 0.1010 -4.4144 2.4886 27 1 1.6759 -3.6073 2.7674 28 1 0.8037 -5.2906 0.3547 29 1 2.3107 -5.4256 1.3169 30 1 3.8098 -2.6376 -1.7212 31 1 2.2672 -2.4965 -2.6199 32 1 2.9343 -4.0366 -4.2513 33 1 4.5772 -3.5512 -3.7361 34 1 5.6286 -5.7543 -3.7846 35 1 2.8958 -6.2600 -1.0912 36 1 4.2247 -5.1226 -0.7124 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260996794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:31 Heat of formation + Delta-G solvation = -80.288417 kcal Electronic energy + Delta-G solvation = -16407.092288 eV Core-core repulsion = 13889.352993 eV Total energy + Delta-G solvation = -2517.739295 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.52396 -38.46462 -36.20205 -34.50223 -31.49997 -30.40923 -28.96585 -27.42406 -25.75025 -22.62592 -22.01785 -20.91850 -20.39672 -18.34246 -18.09652 -17.29578 -16.70780 -16.28898 -15.64233 -15.17199 -14.62603 -14.35182 -14.21709 -13.89162 -13.61295 -13.30565 -13.05734 -12.93245 -12.53963 -12.42844 -12.28143 -11.99466 -11.69124 -11.55576 -11.44654 -11.37533 -10.88838 -10.82589 -10.71069 -10.45906 -9.36630 -8.11139 -6.19448 1.36809 1.38254 1.47533 2.41537 2.96684 3.20748 3.51107 3.71791 3.86412 4.07692 4.10472 4.14495 4.35884 4.38528 4.65331 4.70978 4.79139 4.84072 4.89902 4.95480 5.02197 5.09006 5.12095 5.16184 5.20518 5.30042 5.45091 5.55420 5.66036 5.85617 5.89986 6.03658 6.31615 6.47470 6.91001 6.93056 7.46420 8.97838 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025615 B = 0.009529 C = 0.007504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.833284 B = 2937.560904 C = 3730.528564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.518 4.518 8 H 0.042 0.958 9 C 0.057 3.943 10 H 0.001 0.999 11 C -0.088 4.088 12 C -0.117 4.117 13 C -0.103 4.103 14 C 0.081 3.919 15 H 0.021 0.979 16 N -0.505 5.505 17 C 0.047 3.953 18 C -0.150 4.150 19 C 0.108 3.892 20 H 0.087 0.913 21 O -0.581 6.581 22 C 0.035 3.965 23 H 0.259 0.741 24 H 0.024 0.976 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.023 0.977 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.397 0.603 35 H 0.097 0.903 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.458 -10.452 -4.443 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.556 4.556 8 H 0.060 0.940 9 C 0.038 3.962 10 H 0.019 0.981 11 C -0.127 4.127 12 C -0.155 4.155 13 C -0.141 4.141 14 C -0.028 4.028 15 H 0.039 0.961 16 N -0.229 5.229 17 C -0.081 4.081 18 C -0.188 4.188 19 C 0.049 3.951 20 H 0.105 0.895 21 O -0.389 6.389 22 C -0.093 4.093 23 H 0.068 0.932 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.247 0.753 35 H 0.115 0.885 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.702 -10.519 -3.983 12.610 hybrid contribution 0.954 1.845 -0.179 2.085 sum 6.656 -8.673 -4.162 11.698 Atomic orbital electron populations 1.70100 1.07070 1.26977 1.51499 1.25652 0.95544 1.01976 0.95256 0.85770 0.78803 0.80204 0.78194 1.20188 1.20914 1.19603 1.21457 0.92134 0.91968 1.50036 0.93963 1.19132 0.92445 0.91231 0.93404 0.98078 1.21879 0.97237 0.95905 0.97707 1.22335 0.99923 0.95979 0.97273 1.22427 0.99526 0.96370 0.95755 1.22735 0.97006 0.95502 0.87570 0.96125 1.65473 1.41106 1.06895 1.09471 1.22820 0.96783 0.94583 0.93947 1.23093 1.01905 0.95955 0.97851 1.22460 0.82164 0.94997 0.95523 0.89470 1.86468 1.23996 1.92884 1.35568 1.23079 0.93992 0.96185 0.95996 0.93199 0.95727 0.95055 0.90753 0.92262 0.90893 0.90866 0.95875 0.92283 0.89465 0.89632 0.75259 0.88524 0.94693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.27 12.45 21.45 0.27 -54.01 16 2 C 0.01 0.81 5.09 84.66 0.43 1.24 16 3 Si 0.94 44.52 29.54 68.60 2.03 46.55 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.52 -28.86 7.58 25.60 0.19 -28.66 16 8 H 0.04 2.37 7.39 -2.91 -0.02 2.35 16 9 C 0.06 2.90 1.95 -10.82 -0.02 2.88 16 10 H 0.00 0.06 8.04 -2.38 -0.02 0.04 16 11 C -0.09 -4.30 5.60 31.32 0.18 -4.13 16 12 C -0.12 -4.40 6.83 31.67 0.22 -4.19 16 13 C -0.10 -3.66 5.91 31.87 0.19 -3.47 16 14 C 0.08 3.42 1.87 45.97 0.09 3.51 16 15 H 0.02 0.95 7.58 -2.38 -0.02 0.93 16 16 N -0.50 -19.26 5.16 -850.16 -4.39 -23.65 16 17 C 0.05 1.80 5.27 86.45 0.46 2.25 16 18 C -0.15 -4.08 6.79 31.49 0.21 -3.87 16 19 C 0.11 2.72 4.43 31.49 0.14 2.86 16 20 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 21 O -0.58 -13.53 13.27 -148.98 -1.98 -15.51 16 22 C 0.04 1.10 5.67 86.45 0.49 1.59 16 23 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 24 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.03 1.67 7.27 -2.38 -0.02 1.65 16 26 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 30 H 0.02 0.97 7.79 -2.39 -0.02 0.95 16 31 H 0.06 2.58 8.07 -2.39 -0.02 2.56 16 32 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.09 2.08 7.99 -2.39 -0.02 2.06 16 34 H 0.40 5.23 9.11 -74.06 -0.67 4.55 16 35 H 0.10 2.66 8.11 -2.39 -0.02 2.64 16 36 H 0.03 1.18 7.88 -2.39 -0.02 1.16 16 Total: -1.00 -64.59 283.26 -1.13 -65.73 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.37 Total: 10.86 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 2.57 Total: -29.98 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -4.12 Total: -77.66 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -1.98 Total: -15.51 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -64.59 -1.13 -65.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260996794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.562 kcal (2) G-P(sol) polarization free energy of solvation -64.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds