Wall clock time and date at job start Mon Mar 30 2020 03:06:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86798 * 120.00264 * 2 1
4 4 H 1.48504 * 109.47033 * 264.78103 * 3 2 1
5 5 H 1.48498 * 109.47287 * 24.78252 * 3 2 1
6 6 H 1.48498 * 109.47286 * 144.78138 * 3 2 1
7 7 C 1.37880 * 120.00119 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99657 * 5.49097 * 7 2 1
9 9 C 1.50699 * 120.00338 * 185.49238 * 7 2 1
10 10 H 1.09006 * 109.53314 * 335.09605 * 9 7 2
11 11 C 1.53117 * 109.50773 * 95.20106 * 9 7 2
12 12 C 1.53115 * 109.21374 * 177.62716 * 11 9 7
13 13 C 1.53035 * 109.27873 * 302.31444 * 12 11 9
14 14 N 1.46846 * 109.52651 * 59.18030 * 13 12 11
15 15 C 1.46895 * 111.00414 * 174.16061 * 14 13 12
16 16 C 1.53006 * 109.47187 * 293.95708 * 15 14 13
17 17 C 1.54034 * 113.81291 * 273.50603 * 16 15 14
18 18 O 1.44445 * 85.42514 * 223.23417 * 17 16 15
19 19 C 1.44181 * 93.37750 * 24.09085 * 18 17 16
20 20 C 1.46854 * 111.19454 * 298.25915 * 14 13 12
21 21 H 0.97001 * 119.99915 * 359.97438 * 1 2 3
22 22 H 1.08999 * 109.51970 * 57.68717 * 11 9 7
23 23 H 1.08997 * 109.51796 * 297.56604 * 11 9 7
24 24 H 1.09009 * 109.50058 * 62.25530 * 12 11 9
25 25 H 1.08995 * 109.50280 * 182.37030 * 12 11 9
26 26 H 1.09001 * 109.46338 * 179.19644 * 13 12 11
27 27 H 1.09001 * 109.46370 * 299.15975 * 13 12 11
28 28 H 1.09009 * 109.47035 * 53.94974 * 15 14 13
29 29 H 1.08997 * 109.47598 * 173.95394 * 15 14 13
30 30 H 1.08994 * 112.99892 * 45.32695 * 16 15 14
31 31 H 1.09004 * 113.86145 * 337.33925 * 17 16 15
32 32 H 1.09001 * 113.86754 * 109.04376 * 17 16 15
33 33 H 1.09005 * 113.86371 * 221.76836 * 19 18 17
34 34 H 1.08994 * 113.99005 * 90.07519 * 19 18 17
35 35 H 1.09000 * 109.45909 * 181.75571 * 20 14 13
36 36 H 1.09000 * 109.46146 * 301.73111 * 20 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.6070 1.9827 -1.3943
5 1 1.3959 2.6820 0.5869
6 1 3.4872 1.4744 0.8074
7 6 2.0045 -1.1941 0.0005
8 1 1.4682 -2.1273 -0.0886
9 6 3.5063 -1.1971 0.1254
10 1 3.9036 -0.2465 -0.2308
11 6 3.8970 -1.3969 1.5924
12 6 5.4229 -1.4582 1.7036
13 6 5.9486 -2.5929 0.8215
14 7 5.5507 -2.3558 -0.5720
15 6 6.1543 -3.3507 -1.4685
16 6 7.6730 -3.1656 -1.4870
17 6 8.1606 -2.1286 -2.5163
18 8 9.1940 -3.0900 -2.8230
19 6 8.4160 -4.2062 -2.3460
20 6 4.0889 -2.3401 -0.7114
21 1 -0.4850 0.8401 0.0004
22 1 3.4672 -2.3287 1.9601
23 1 3.5216 -0.5634 2.1860
24 1 5.8502 -0.5117 1.3723
25 1 5.7050 -1.6425 2.7402
26 1 7.0360 -2.6301 0.8873
27 1 5.5317 -3.5407 1.1621
28 1 5.9148 -4.3530 -1.1128
29 1 5.7599 -3.2188 -2.4760
30 1 8.0979 -3.0318 -0.4923
31 1 7.4611 -1.9568 -3.3345
32 1 8.5328 -1.2061 -2.0706
33 1 8.9903 -4.9281 -1.7655
34 1 7.7941 -4.6718 -3.1105
35 1 3.8256 -2.1936 -1.7589
36 1 3.6806 -3.2890 -0.3636
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261005935.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:09
Heat of formation + Delta-G solvation = -20.315852 kcal
Electronic energy + Delta-G solvation = -16057.422613 eV
Core-core repulsion = 13542.283923 eV
Total energy + Delta-G solvation = -2515.138690 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-40.37869 -38.23064 -33.99619 -32.27262 -30.36837 -29.91207 -26.52486 -25.14619
-25.04552 -22.06636 -21.45752 -19.74756 -18.79345 -16.92825 -16.47972 -15.90572
-15.63245 -15.06669 -14.31195 -14.08061 -13.62679 -13.45478 -12.74161 -12.69832
-12.53067 -12.44404 -12.12612 -11.32371 -11.13887 -10.96206 -10.85086 -10.70611
-10.50846 -10.20945 -9.82085 -9.66440 -9.54187 -9.26357 -8.94539 -8.50168
-7.83523 -6.07994 -4.07397 3.31570 3.39417 3.43492 3.68702 4.06177
4.43831 4.56366 4.83778 5.12653 5.22426 5.28671 5.33662 5.43176
5.48195 5.56933 5.66186 5.78186 5.85635 5.99673 6.04592 6.09288
6.13928 6.23162 6.31430 6.39293 6.49044 6.66986 6.82135 6.90927
7.29424 7.45623 7.56889 7.59991 7.86398 8.52663 8.96698 9.55902
11.05243
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.038684 B = 0.006776 C = 0.006576
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 723.647542 B = 4131.248324 C = 4257.037519
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.072 3.928
3 Si 0.879 3.121
4 H -0.276 1.276
5 H -0.292 1.292
6 H -0.263 1.263
7 C -0.513 4.513
8 H 0.070 0.930
9 C 0.021 3.979
10 H 0.039 0.961
11 C -0.113 4.113
12 C -0.120 4.120
13 C 0.060 3.940
14 N -0.541 5.541
15 C 0.057 3.943
16 C -0.150 4.150
17 C 0.048 3.952
18 O -0.391 6.391
19 C 0.038 3.962
20 C 0.072 3.928
21 H 0.263 0.737
22 H 0.049 0.951
23 H 0.052 0.948
24 H 0.061 0.939
25 H 0.052 0.948
26 H 0.062 0.938
27 H 0.026 0.974
28 H 0.033 0.967
29 H 0.076 0.924
30 H 0.103 0.897
31 H 0.083 0.917
32 H 0.090 0.910
33 H 0.086 0.914
34 H 0.080 0.920
35 H 0.067 0.933
36 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.409 -5.690 -1.407 15.556
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.539 5.539
2 C -0.130 4.130
3 Si 0.707 3.293
4 H -0.202 1.202
5 H -0.218 1.218
6 H -0.188 1.188
7 C -0.551 4.551
8 H 0.088 0.912
9 C 0.002 3.998
10 H 0.057 0.943
11 C -0.151 4.151
12 C -0.158 4.158
13 C -0.068 4.068
14 N -0.266 5.266
15 C -0.072 4.072
16 C -0.169 4.169
17 C -0.028 4.028
18 O -0.310 6.310
19 C -0.040 4.040
20 C -0.055 4.055
21 H 0.073 0.927
22 H 0.067 0.933
23 H 0.070 0.930
24 H 0.080 0.920
25 H 0.070 0.930
26 H 0.080 0.920
27 H 0.044 0.956
28 H 0.051 0.949
29 H 0.094 0.906
30 H 0.121 0.879
31 H 0.101 0.899
32 H 0.108 0.892
33 H 0.105 0.895
34 H 0.098 0.902
35 H 0.085 0.915
36 H 0.042 0.958
Dipole moment (debyes) X Y Z Total
from point charges 14.661 -5.088 -1.656 15.607
hybrid contribution -0.204 0.065 0.361 0.420
sum 14.457 -5.023 -1.295 15.360
Atomic orbital electron populations
1.69912 1.06377 1.27002 1.50639 1.25051 0.94661 0.99040 0.94221
0.86826 0.80181 0.83454 0.78880 1.20182 1.21813 1.18776 1.20959
0.89195 0.94505 1.50481 0.91162 1.19174 0.95791 0.94293 0.90592
0.94268 1.21868 0.91971 1.00817 1.00422 1.21680 0.98498 0.98318
0.97325 1.22048 0.98879 0.97252 0.88604 1.62042 1.11459 1.47560
1.05537 1.22140 0.92941 0.93968 0.98132 1.24384 0.96385 0.95439
1.00655 1.23996 0.88671 0.93905 0.96229 1.89679 1.35882 1.18377
1.87027 1.23951 0.92869 0.91208 0.95945 1.22294 0.83259 0.99022
1.00914 0.92676 0.93268 0.92971 0.92015 0.92956 0.91960 0.95567
0.94911 0.90597 0.87927 0.89927 0.89154 0.89533 0.90240 0.91480
0.95830
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16
2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16
3 Si 0.88 21.60 27.01 -169.99 -4.59 17.01 16
4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
6 H -0.26 -6.22 6.80 56.52 0.38 -5.83 16
7 C -0.51 -14.15 8.87 -34.44 -0.31 -14.45 16
8 H 0.07 2.11 8.06 -52.48 -0.42 1.68 16
9 C 0.02 0.48 1.94 -91.62 -0.18 0.30 16
10 H 0.04 0.94 5.27 -51.93 -0.27 0.67 16
11 C -0.11 -2.35 5.26 -26.61 -0.14 -2.49 16
12 C -0.12 -2.05 6.09 -26.65 -0.16 -2.21 16
13 C 0.06 0.93 5.31 -3.84 -0.02 0.91 16
14 N -0.54 -9.03 4.66 -234.58 -1.09 -10.12 16
15 C 0.06 0.76 4.81 -3.82 -0.02 0.74 16
16 C -0.15 -1.76 3.92 -89.54 -0.35 -2.11 16
17 C 0.05 0.59 8.79 37.64 0.33 0.92 16
18 O -0.39 -5.20 12.46 -35.23 -0.44 -5.64 16
19 C 0.04 0.40 8.79 37.64 0.33 0.73 16
20 C 0.07 1.43 4.73 -3.76 -0.02 1.42 16
21 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
22 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16
23 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16
24 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16
25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16
26 H 0.06 0.84 6.11 -51.93 -0.32 0.52 16
27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16
28 H 0.03 0.43 8.12 -51.92 -0.42 0.01 16
29 H 0.08 1.00 7.72 -51.93 -0.40 0.60 16
30 H 0.10 1.21 6.22 -51.93 -0.32 0.89 16
31 H 0.08 0.96 7.92 -51.93 -0.41 0.55 16
32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16
33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16
34 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16
35 H 0.07 1.35 8.01 -51.93 -0.42 0.93 16
36 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16
LS Contribution 282.05 15.07 4.25 4.25
Total: -1.00 -29.89 282.05 -7.67 -37.56
By element:
Atomic # 1 Polarization: 3.76 SS G_CDS: -5.94 Total: -2.18 kcal
Atomic # 6 Polarization: -13.66 SS G_CDS: -0.63 Total: -14.29 kcal
Atomic # 7 Polarization: -36.39 SS G_CDS: -0.32 Total: -36.71 kcal
Atomic # 8 Polarization: -5.20 SS G_CDS: -0.44 Total: -5.64 kcal
Atomic # 14 Polarization: 21.60 SS G_CDS: -4.59 Total: 17.01 kcal
Total LS contribution 4.25 Total: 4.25 kcal
Total: -29.89 -7.67 -37.56 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261005935.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.246 kcal
(2) G-P(sol) polarization free energy of solvation -29.893 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.648 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.316 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds