Wall clock time and date at job start Mon Mar 30 2020 03:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00264 * 2 1 4 4 H 1.48504 * 109.47033 * 264.78103 * 3 2 1 5 5 H 1.48498 * 109.47287 * 24.78252 * 3 2 1 6 6 H 1.48498 * 109.47286 * 144.78138 * 3 2 1 7 7 C 1.37880 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99657 * 5.49097 * 7 2 1 9 9 C 1.50699 * 120.00338 * 185.49238 * 7 2 1 10 10 H 1.09006 * 109.53314 * 335.09605 * 9 7 2 11 11 C 1.53117 * 109.50773 * 95.20106 * 9 7 2 12 12 C 1.53115 * 109.21374 * 177.62716 * 11 9 7 13 13 C 1.53035 * 109.27873 * 302.31444 * 12 11 9 14 14 N 1.46846 * 109.52651 * 59.18030 * 13 12 11 15 15 C 1.46895 * 111.00414 * 174.16061 * 14 13 12 16 16 C 1.53006 * 109.47187 * 293.95708 * 15 14 13 17 17 C 1.54034 * 113.81291 * 273.50603 * 16 15 14 18 18 O 1.44445 * 85.42514 * 223.23417 * 17 16 15 19 19 C 1.44181 * 93.37750 * 24.09085 * 18 17 16 20 20 C 1.46854 * 111.19454 * 298.25915 * 14 13 12 21 21 H 0.97001 * 119.99915 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.51970 * 57.68717 * 11 9 7 23 23 H 1.08997 * 109.51796 * 297.56604 * 11 9 7 24 24 H 1.09009 * 109.50058 * 62.25530 * 12 11 9 25 25 H 1.08995 * 109.50280 * 182.37030 * 12 11 9 26 26 H 1.09001 * 109.46338 * 179.19644 * 13 12 11 27 27 H 1.09001 * 109.46370 * 299.15975 * 13 12 11 28 28 H 1.09009 * 109.47035 * 53.94974 * 15 14 13 29 29 H 1.08997 * 109.47598 * 173.95394 * 15 14 13 30 30 H 1.08994 * 112.99892 * 45.32695 * 16 15 14 31 31 H 1.09004 * 113.86145 * 337.33925 * 17 16 15 32 32 H 1.09001 * 113.86754 * 109.04376 * 17 16 15 33 33 H 1.09005 * 113.86371 * 221.76836 * 19 18 17 34 34 H 1.08994 * 113.99005 * 90.07519 * 19 18 17 35 35 H 1.09000 * 109.45909 * 181.75571 * 20 14 13 36 36 H 1.09000 * 109.46146 * 301.73111 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6070 1.9827 -1.3943 5 1 1.3959 2.6820 0.5869 6 1 3.4872 1.4744 0.8074 7 6 2.0045 -1.1941 0.0005 8 1 1.4682 -2.1273 -0.0886 9 6 3.5063 -1.1971 0.1254 10 1 3.9036 -0.2465 -0.2308 11 6 3.8970 -1.3969 1.5924 12 6 5.4229 -1.4582 1.7036 13 6 5.9486 -2.5929 0.8215 14 7 5.5507 -2.3558 -0.5720 15 6 6.1543 -3.3507 -1.4685 16 6 7.6730 -3.1656 -1.4870 17 6 8.1606 -2.1286 -2.5163 18 8 9.1940 -3.0900 -2.8230 19 6 8.4160 -4.2062 -2.3460 20 6 4.0889 -2.3401 -0.7114 21 1 -0.4850 0.8401 0.0004 22 1 3.4672 -2.3287 1.9601 23 1 3.5216 -0.5634 2.1860 24 1 5.8502 -0.5117 1.3723 25 1 5.7050 -1.6425 2.7402 26 1 7.0360 -2.6301 0.8873 27 1 5.5317 -3.5407 1.1621 28 1 5.9148 -4.3530 -1.1128 29 1 5.7599 -3.2188 -2.4760 30 1 8.0979 -3.0318 -0.4923 31 1 7.4611 -1.9568 -3.3345 32 1 8.5328 -1.2061 -2.0706 33 1 8.9903 -4.9281 -1.7655 34 1 7.7941 -4.6718 -3.1105 35 1 3.8256 -2.1936 -1.7589 36 1 3.6806 -3.2890 -0.3636 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261005935.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:09 Heat of formation + Delta-G solvation = -20.315852 kcal Electronic energy + Delta-G solvation = -16057.422613 eV Core-core repulsion = 13542.283923 eV Total energy + Delta-G solvation = -2515.138690 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.37869 -38.23064 -33.99619 -32.27262 -30.36837 -29.91207 -26.52486 -25.14619 -25.04552 -22.06636 -21.45752 -19.74756 -18.79345 -16.92825 -16.47972 -15.90572 -15.63245 -15.06669 -14.31195 -14.08061 -13.62679 -13.45478 -12.74161 -12.69832 -12.53067 -12.44404 -12.12612 -11.32371 -11.13887 -10.96206 -10.85086 -10.70611 -10.50846 -10.20945 -9.82085 -9.66440 -9.54187 -9.26357 -8.94539 -8.50168 -7.83523 -6.07994 -4.07397 3.31570 3.39417 3.43492 3.68702 4.06177 4.43831 4.56366 4.83778 5.12653 5.22426 5.28671 5.33662 5.43176 5.48195 5.56933 5.66186 5.78186 5.85635 5.99673 6.04592 6.09288 6.13928 6.23162 6.31430 6.39293 6.49044 6.66986 6.82135 6.90927 7.29424 7.45623 7.56889 7.59991 7.86398 8.52663 8.96698 9.55902 11.05243 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038684 B = 0.006776 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.647542 B = 4131.248324 C = 4257.037519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.072 3.928 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.070 0.930 9 C 0.021 3.979 10 H 0.039 0.961 11 C -0.113 4.113 12 C -0.120 4.120 13 C 0.060 3.940 14 N -0.541 5.541 15 C 0.057 3.943 16 C -0.150 4.150 17 C 0.048 3.952 18 O -0.391 6.391 19 C 0.038 3.962 20 C 0.072 3.928 21 H 0.263 0.737 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.026 0.974 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.409 -5.690 -1.407 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.188 1.188 7 C -0.551 4.551 8 H 0.088 0.912 9 C 0.002 3.998 10 H 0.057 0.943 11 C -0.151 4.151 12 C -0.158 4.158 13 C -0.068 4.068 14 N -0.266 5.266 15 C -0.072 4.072 16 C -0.169 4.169 17 C -0.028 4.028 18 O -0.310 6.310 19 C -0.040 4.040 20 C -0.055 4.055 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 14.661 -5.088 -1.656 15.607 hybrid contribution -0.204 0.065 0.361 0.420 sum 14.457 -5.023 -1.295 15.360 Atomic orbital electron populations 1.69912 1.06377 1.27002 1.50639 1.25051 0.94661 0.99040 0.94221 0.86826 0.80181 0.83454 0.78880 1.20182 1.21813 1.18776 1.20959 0.89195 0.94505 1.50481 0.91162 1.19174 0.95791 0.94293 0.90592 0.94268 1.21868 0.91971 1.00817 1.00422 1.21680 0.98498 0.98318 0.97325 1.22048 0.98879 0.97252 0.88604 1.62042 1.11459 1.47560 1.05537 1.22140 0.92941 0.93968 0.98132 1.24384 0.96385 0.95439 1.00655 1.23996 0.88671 0.93905 0.96229 1.89679 1.35882 1.18377 1.87027 1.23951 0.92869 0.91208 0.95945 1.22294 0.83259 0.99022 1.00914 0.92676 0.93268 0.92971 0.92015 0.92956 0.91960 0.95567 0.94911 0.90597 0.87927 0.89927 0.89154 0.89533 0.90240 0.91480 0.95830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 21.60 27.01 -169.99 -4.59 17.01 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.22 6.80 56.52 0.38 -5.83 16 7 C -0.51 -14.15 8.87 -34.44 -0.31 -14.45 16 8 H 0.07 2.11 8.06 -52.48 -0.42 1.68 16 9 C 0.02 0.48 1.94 -91.62 -0.18 0.30 16 10 H 0.04 0.94 5.27 -51.93 -0.27 0.67 16 11 C -0.11 -2.35 5.26 -26.61 -0.14 -2.49 16 12 C -0.12 -2.05 6.09 -26.65 -0.16 -2.21 16 13 C 0.06 0.93 5.31 -3.84 -0.02 0.91 16 14 N -0.54 -9.03 4.66 -234.58 -1.09 -10.12 16 15 C 0.06 0.76 4.81 -3.82 -0.02 0.74 16 16 C -0.15 -1.76 3.92 -89.54 -0.35 -2.11 16 17 C 0.05 0.59 8.79 37.64 0.33 0.92 16 18 O -0.39 -5.20 12.46 -35.23 -0.44 -5.64 16 19 C 0.04 0.40 8.79 37.64 0.33 0.73 16 20 C 0.07 1.43 4.73 -3.76 -0.02 1.42 16 21 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 23 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.84 6.11 -51.93 -0.32 0.52 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.03 0.43 8.12 -51.92 -0.42 0.01 16 29 H 0.08 1.00 7.72 -51.93 -0.40 0.60 16 30 H 0.10 1.21 6.22 -51.93 -0.32 0.89 16 31 H 0.08 0.96 7.92 -51.93 -0.41 0.55 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.07 1.35 8.01 -51.93 -0.42 0.93 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 282.05 15.07 4.25 4.25 Total: -1.00 -29.89 282.05 -7.67 -37.56 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.94 Total: -2.18 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -0.63 Total: -14.29 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: -0.32 Total: -36.71 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.44 Total: -5.64 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.59 Total: 17.01 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.89 -7.67 -37.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005935.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.246 kcal (2) G-P(sol) polarization free energy of solvation -29.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds