Wall clock time and date at job start Mon Mar 30 2020 03:06:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86798 * 120.00264 * 2 1
4 4 H 1.48504 * 109.47033 * 264.78103 * 3 2 1
5 5 H 1.48498 * 109.47287 * 24.78252 * 3 2 1
6 6 H 1.48498 * 109.47286 * 144.78138 * 3 2 1
7 7 C 1.37880 * 120.00119 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99657 * 5.49097 * 7 2 1
9 9 C 1.50699 * 120.00338 * 185.49238 * 7 2 1
10 10 H 1.09006 * 109.53314 * 335.09605 * 9 7 2
11 11 C 1.53117 * 109.50773 * 95.20106 * 9 7 2
12 12 C 1.53115 * 109.21374 * 177.62716 * 11 9 7
13 13 C 1.53035 * 109.27873 * 302.31444 * 12 11 9
14 14 N 1.46846 * 109.52651 * 59.18030 * 13 12 11
15 15 C 1.46895 * 111.00414 * 174.16061 * 14 13 12
16 16 C 1.53006 * 109.47187 * 293.95708 * 15 14 13
17 17 C 1.54034 * 113.81291 * 273.50603 * 16 15 14
18 18 O 1.44445 * 85.42514 * 223.23417 * 17 16 15
19 19 C 1.44181 * 93.37750 * 24.09085 * 18 17 16
20 20 C 1.46854 * 111.19454 * 298.25915 * 14 13 12
21 21 H 0.97001 * 119.99915 * 359.97438 * 1 2 3
22 22 H 1.08999 * 109.51970 * 57.68717 * 11 9 7
23 23 H 1.08997 * 109.51796 * 297.56604 * 11 9 7
24 24 H 1.09009 * 109.50058 * 62.25530 * 12 11 9
25 25 H 1.08995 * 109.50280 * 182.37030 * 12 11 9
26 26 H 1.09001 * 109.46338 * 179.19644 * 13 12 11
27 27 H 1.09001 * 109.46370 * 299.15975 * 13 12 11
28 28 H 1.09009 * 109.47035 * 53.94974 * 15 14 13
29 29 H 1.08997 * 109.47598 * 173.95394 * 15 14 13
30 30 H 1.08994 * 112.99892 * 45.32695 * 16 15 14
31 31 H 1.09004 * 113.86145 * 337.33925 * 17 16 15
32 32 H 1.09001 * 113.86754 * 109.04376 * 17 16 15
33 33 H 1.09005 * 113.86371 * 221.76836 * 19 18 17
34 34 H 1.08994 * 113.99005 * 90.07519 * 19 18 17
35 35 H 1.09000 * 109.45909 * 181.75571 * 20 14 13
36 36 H 1.09000 * 109.46146 * 301.73111 * 20 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.6070 1.9827 -1.3943
5 1 1.3959 2.6820 0.5869
6 1 3.4872 1.4744 0.8074
7 6 2.0045 -1.1941 0.0005
8 1 1.4682 -2.1273 -0.0886
9 6 3.5063 -1.1971 0.1254
10 1 3.9036 -0.2465 -0.2308
11 6 3.8970 -1.3969 1.5924
12 6 5.4229 -1.4582 1.7036
13 6 5.9486 -2.5929 0.8215
14 7 5.5507 -2.3558 -0.5720
15 6 6.1543 -3.3507 -1.4685
16 6 7.6730 -3.1656 -1.4870
17 6 8.1606 -2.1286 -2.5163
18 8 9.1940 -3.0900 -2.8230
19 6 8.4160 -4.2062 -2.3460
20 6 4.0889 -2.3401 -0.7114
21 1 -0.4850 0.8401 0.0004
22 1 3.4672 -2.3287 1.9601
23 1 3.5216 -0.5634 2.1860
24 1 5.8502 -0.5117 1.3723
25 1 5.7050 -1.6425 2.7402
26 1 7.0360 -2.6301 0.8873
27 1 5.5317 -3.5407 1.1621
28 1 5.9148 -4.3530 -1.1128
29 1 5.7599 -3.2188 -2.4760
30 1 8.0979 -3.0318 -0.4923
31 1 7.4611 -1.9568 -3.3345
32 1 8.5328 -1.2061 -2.0706
33 1 8.9903 -4.9281 -1.7655
34 1 7.7941 -4.6718 -3.1105
35 1 3.8256 -2.1936 -1.7589
36 1 3.6806 -3.2890 -0.3636
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261005935.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:09
Heat of formation + Delta-G solvation = -41.154715 kcal
Electronic energy + Delta-G solvation = -16058.326254 eV
Core-core repulsion = 13542.283923 eV
Total energy + Delta-G solvation = -2516.042331 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.32606 -39.64448 -35.63861 -34.08683 -31.98503 -31.13320 -27.37383 -26.95470
-26.34852 -23.47426 -22.96513 -20.74197 -20.43154 -18.98892 -17.46900 -17.01749
-16.75097 -16.30910 -15.93522 -15.54603 -15.08755 -14.93743 -14.53765 -14.17659
-13.80633 -13.53835 -13.47502 -12.94399 -12.83070 -12.45533 -12.32555 -11.82002
-11.78003 -11.75749 -11.54015 -11.27843 -10.98350 -10.76574 -10.61343 -10.55698
-9.16119 -8.28831 -6.32111 1.36777 1.37583 1.49489 2.36462 2.79885
2.93525 3.09476 3.53753 3.84934 4.11506 4.16964 4.30013 4.33274
4.40704 4.47466 4.49334 4.58424 4.65943 4.75438 4.78583 4.85581
4.89936 5.01006 5.08148 5.15478 5.22350 5.23580 5.26538 5.31588
5.57333 5.66103 5.76708 6.16010 6.30116 6.39212 6.76265 7.34358
8.88177
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.038684 B = 0.006776 C = 0.006576
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 723.647542 B = 4131.248324 C = 4257.037519
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.951 5.951
2 C 0.013 3.987
3 Si 0.943 3.057
4 H -0.268 1.268
5 H -0.290 1.290
6 H -0.246 1.246
7 C -0.516 4.516
8 H 0.028 0.972
9 C 0.018 3.982
10 H 0.035 0.965
11 C -0.112 4.112
12 C -0.114 4.114
13 C 0.060 3.940
14 N -0.546 5.546
15 C 0.058 3.942
16 C -0.142 4.142
17 C 0.044 3.956
18 O -0.413 6.413
19 C 0.042 3.958
20 C 0.083 3.917
21 H 0.265 0.735
22 H 0.040 0.960
23 H 0.037 0.963
24 H 0.061 0.939
25 H 0.080 0.920
26 H 0.094 0.906
27 H 0.027 0.973
28 H 0.041 0.959
29 H 0.075 0.925
30 H 0.108 0.892
31 H 0.084 0.916
32 H 0.093 0.907
33 H 0.106 0.894
34 H 0.091 0.909
35 H 0.058 0.942
36 H 0.013 0.987
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.264 -5.690 -1.156 18.214
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.591 5.591
2 C -0.184 4.184
3 Si 0.768 3.232
4 H -0.193 1.193
5 H -0.217 1.217
6 H -0.169 1.169
7 C -0.554 4.554
8 H 0.047 0.953
9 C -0.001 4.001
10 H 0.053 0.947
11 C -0.150 4.150
12 C -0.151 4.151
13 C -0.068 4.068
14 N -0.270 5.270
15 C -0.070 4.070
16 C -0.161 4.161
17 C -0.032 4.032
18 O -0.333 6.333
19 C -0.035 4.035
20 C -0.045 4.045
21 H 0.074 0.926
22 H 0.059 0.941
23 H 0.056 0.944
24 H 0.080 0.920
25 H 0.098 0.902
26 H 0.112 0.888
27 H 0.045 0.955
28 H 0.059 0.941
29 H 0.094 0.906
30 H 0.126 0.874
31 H 0.102 0.898
32 H 0.111 0.889
33 H 0.124 0.876
34 H 0.109 0.891
35 H 0.077 0.923
36 H 0.031 0.969
Dipole moment (debyes) X Y Z Total
from point charges 17.545 -5.109 -1.405 18.328
hybrid contribution -1.130 -0.047 0.271 1.163
sum 16.415 -5.157 -1.134 17.243
Atomic orbital electron populations
1.70060 1.08268 1.28018 1.52779 1.25912 0.95385 1.02952 0.94123
0.85788 0.79327 0.78648 0.79458 1.19305 1.21656 1.16914 1.21264
0.91870 0.92859 1.49406 0.95318 1.19138 0.92723 0.95377 0.92870
0.94720 1.21743 0.95359 0.99752 0.98133 1.21631 0.94884 0.99083
0.99545 1.22129 1.00696 0.96542 0.87429 1.61976 1.08845 1.49268
1.06947 1.22197 0.93973 0.93439 0.97356 1.24325 0.94745 0.96017
1.01015 1.24079 0.88560 0.94103 0.96490 1.89667 1.36768 1.19509
1.87331 1.24124 0.92600 0.90802 0.95979 1.21947 0.85813 0.97094
0.99598 0.92604 0.94126 0.94449 0.92014 0.90181 0.88774 0.95476
0.94111 0.90614 0.87405 0.89824 0.88860 0.87616 0.89132 0.92297
0.96887
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16
2 C 0.01 0.77 5.47 84.66 0.46 1.23 16
3 Si 0.94 44.67 27.01 68.60 1.85 46.52 16
4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16
5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16
6 H -0.25 -10.83 6.80 99.48 0.68 -10.15 16
7 C -0.52 -29.29 8.87 25.60 0.23 -29.06 16
8 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16
9 C 0.02 0.83 1.94 -11.44 -0.02 0.81 16
10 H 0.03 1.62 5.27 -2.38 -0.01 1.61 16
11 C -0.11 -4.54 5.26 30.67 0.16 -4.38 16
12 C -0.11 -3.51 6.09 30.64 0.19 -3.33 16
13 C 0.06 1.64 5.31 86.33 0.46 2.10 16
14 N -0.55 -16.87 4.66 -896.06 -4.17 -21.04 16
15 C 0.06 1.40 4.81 86.31 0.41 1.82 16
16 C -0.14 -2.86 3.92 -10.09 -0.04 -2.90 16
17 C 0.04 0.95 8.79 72.30 0.64 1.59 16
18 O -0.41 -9.92 12.46 -148.98 -1.86 -11.78 16
19 C 0.04 0.74 8.79 72.29 0.64 1.38 16
20 C 0.08 3.27 4.73 86.37 0.41 3.68 16
21 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16
22 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16
23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16
24 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16
25 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16
26 H 0.09 2.07 6.11 -2.39 -0.01 2.05 16
27 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16
28 H 0.04 0.94 8.12 -2.38 -0.02 0.92 16
29 H 0.08 1.84 7.72 -2.39 -0.02 1.82 16
30 H 0.11 2.08 6.22 -2.39 -0.01 2.06 16
31 H 0.08 1.77 7.92 -2.39 -0.02 1.76 16
32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16
33 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16
34 H 0.09 1.40 8.10 -2.39 -0.02 1.38 16
35 H 0.06 2.37 8.01 -2.39 -0.02 2.35 16
36 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16
Total: -1.00 -65.54 282.05 0.66 -64.88
By element:
Atomic # 1 Polarization: 6.78 SS G_CDS: 1.00 Total: 7.78 kcal
Atomic # 6 Polarization: -30.59 SS G_CDS: 3.53 Total: -27.06 kcal
Atomic # 7 Polarization: -76.47 SS G_CDS: -3.87 Total: -80.34 kcal
Atomic # 8 Polarization: -9.92 SS G_CDS: -1.86 Total: -11.78 kcal
Atomic # 14 Polarization: 44.67 SS G_CDS: 1.85 Total: 46.52 kcal
Total: -65.54 0.66 -64.88 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261005935.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.725 kcal
(2) G-P(sol) polarization free energy of solvation -65.537 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.812 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.880 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.155 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds