Wall clock time and date at job start Mon Mar 30 2020 03:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00264 * 2 1 4 4 H 1.48504 * 109.47033 * 264.78103 * 3 2 1 5 5 H 1.48498 * 109.47287 * 24.78252 * 3 2 1 6 6 H 1.48498 * 109.47286 * 144.78138 * 3 2 1 7 7 C 1.37880 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99657 * 5.49097 * 7 2 1 9 9 C 1.50699 * 120.00338 * 185.49238 * 7 2 1 10 10 H 1.09006 * 109.53314 * 335.09605 * 9 7 2 11 11 C 1.53117 * 109.50773 * 95.20106 * 9 7 2 12 12 C 1.53115 * 109.21374 * 177.62716 * 11 9 7 13 13 C 1.53035 * 109.27873 * 302.31444 * 12 11 9 14 14 N 1.46846 * 109.52651 * 59.18030 * 13 12 11 15 15 C 1.46895 * 111.00414 * 174.16061 * 14 13 12 16 16 C 1.53006 * 109.47187 * 293.95708 * 15 14 13 17 17 C 1.54034 * 113.81291 * 273.50603 * 16 15 14 18 18 O 1.44445 * 85.42514 * 223.23417 * 17 16 15 19 19 C 1.44181 * 93.37750 * 24.09085 * 18 17 16 20 20 C 1.46854 * 111.19454 * 298.25915 * 14 13 12 21 21 H 0.97001 * 119.99915 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.51970 * 57.68717 * 11 9 7 23 23 H 1.08997 * 109.51796 * 297.56604 * 11 9 7 24 24 H 1.09009 * 109.50058 * 62.25530 * 12 11 9 25 25 H 1.08995 * 109.50280 * 182.37030 * 12 11 9 26 26 H 1.09001 * 109.46338 * 179.19644 * 13 12 11 27 27 H 1.09001 * 109.46370 * 299.15975 * 13 12 11 28 28 H 1.09009 * 109.47035 * 53.94974 * 15 14 13 29 29 H 1.08997 * 109.47598 * 173.95394 * 15 14 13 30 30 H 1.08994 * 112.99892 * 45.32695 * 16 15 14 31 31 H 1.09004 * 113.86145 * 337.33925 * 17 16 15 32 32 H 1.09001 * 113.86754 * 109.04376 * 17 16 15 33 33 H 1.09005 * 113.86371 * 221.76836 * 19 18 17 34 34 H 1.08994 * 113.99005 * 90.07519 * 19 18 17 35 35 H 1.09000 * 109.45909 * 181.75571 * 20 14 13 36 36 H 1.09000 * 109.46146 * 301.73111 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6070 1.9827 -1.3943 5 1 1.3959 2.6820 0.5869 6 1 3.4872 1.4744 0.8074 7 6 2.0045 -1.1941 0.0005 8 1 1.4682 -2.1273 -0.0886 9 6 3.5063 -1.1971 0.1254 10 1 3.9036 -0.2465 -0.2308 11 6 3.8970 -1.3969 1.5924 12 6 5.4229 -1.4582 1.7036 13 6 5.9486 -2.5929 0.8215 14 7 5.5507 -2.3558 -0.5720 15 6 6.1543 -3.3507 -1.4685 16 6 7.6730 -3.1656 -1.4870 17 6 8.1606 -2.1286 -2.5163 18 8 9.1940 -3.0900 -2.8230 19 6 8.4160 -4.2062 -2.3460 20 6 4.0889 -2.3401 -0.7114 21 1 -0.4850 0.8401 0.0004 22 1 3.4672 -2.3287 1.9601 23 1 3.5216 -0.5634 2.1860 24 1 5.8502 -0.5117 1.3723 25 1 5.7050 -1.6425 2.7402 26 1 7.0360 -2.6301 0.8873 27 1 5.5317 -3.5407 1.1621 28 1 5.9148 -4.3530 -1.1128 29 1 5.7599 -3.2188 -2.4760 30 1 8.0979 -3.0318 -0.4923 31 1 7.4611 -1.9568 -3.3345 32 1 8.5328 -1.2061 -2.0706 33 1 8.9903 -4.9281 -1.7655 34 1 7.7941 -4.6718 -3.1105 35 1 3.8256 -2.1936 -1.7589 36 1 3.6806 -3.2890 -0.3636 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261005935.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:09 Heat of formation + Delta-G solvation = -41.154715 kcal Electronic energy + Delta-G solvation = -16058.326254 eV Core-core repulsion = 13542.283923 eV Total energy + Delta-G solvation = -2516.042331 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.32606 -39.64448 -35.63861 -34.08683 -31.98503 -31.13320 -27.37383 -26.95470 -26.34852 -23.47426 -22.96513 -20.74197 -20.43154 -18.98892 -17.46900 -17.01749 -16.75097 -16.30910 -15.93522 -15.54603 -15.08755 -14.93743 -14.53765 -14.17659 -13.80633 -13.53835 -13.47502 -12.94399 -12.83070 -12.45533 -12.32555 -11.82002 -11.78003 -11.75749 -11.54015 -11.27843 -10.98350 -10.76574 -10.61343 -10.55698 -9.16119 -8.28831 -6.32111 1.36777 1.37583 1.49489 2.36462 2.79885 2.93525 3.09476 3.53753 3.84934 4.11506 4.16964 4.30013 4.33274 4.40704 4.47466 4.49334 4.58424 4.65943 4.75438 4.78583 4.85581 4.89936 5.01006 5.08148 5.15478 5.22350 5.23580 5.26538 5.31588 5.57333 5.66103 5.76708 6.16010 6.30116 6.39212 6.76265 7.34358 8.88177 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038684 B = 0.006776 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.647542 B = 4131.248324 C = 4257.037519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.013 3.987 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.246 1.246 7 C -0.516 4.516 8 H 0.028 0.972 9 C 0.018 3.982 10 H 0.035 0.965 11 C -0.112 4.112 12 C -0.114 4.114 13 C 0.060 3.940 14 N -0.546 5.546 15 C 0.058 3.942 16 C -0.142 4.142 17 C 0.044 3.956 18 O -0.413 6.413 19 C 0.042 3.958 20 C 0.083 3.917 21 H 0.265 0.735 22 H 0.040 0.960 23 H 0.037 0.963 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.027 0.973 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.264 -5.690 -1.156 18.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.184 4.184 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.169 1.169 7 C -0.554 4.554 8 H 0.047 0.953 9 C -0.001 4.001 10 H 0.053 0.947 11 C -0.150 4.150 12 C -0.151 4.151 13 C -0.068 4.068 14 N -0.270 5.270 15 C -0.070 4.070 16 C -0.161 4.161 17 C -0.032 4.032 18 O -0.333 6.333 19 C -0.035 4.035 20 C -0.045 4.045 21 H 0.074 0.926 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 17.545 -5.109 -1.405 18.328 hybrid contribution -1.130 -0.047 0.271 1.163 sum 16.415 -5.157 -1.134 17.243 Atomic orbital electron populations 1.70060 1.08268 1.28018 1.52779 1.25912 0.95385 1.02952 0.94123 0.85788 0.79327 0.78648 0.79458 1.19305 1.21656 1.16914 1.21264 0.91870 0.92859 1.49406 0.95318 1.19138 0.92723 0.95377 0.92870 0.94720 1.21743 0.95359 0.99752 0.98133 1.21631 0.94884 0.99083 0.99545 1.22129 1.00696 0.96542 0.87429 1.61976 1.08845 1.49268 1.06947 1.22197 0.93973 0.93439 0.97356 1.24325 0.94745 0.96017 1.01015 1.24079 0.88560 0.94103 0.96490 1.89667 1.36768 1.19509 1.87331 1.24124 0.92600 0.90802 0.95979 1.21947 0.85813 0.97094 0.99598 0.92604 0.94126 0.94449 0.92014 0.90181 0.88774 0.95476 0.94111 0.90614 0.87405 0.89824 0.88860 0.87616 0.89132 0.92297 0.96887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 2 C 0.01 0.77 5.47 84.66 0.46 1.23 16 3 Si 0.94 44.67 27.01 68.60 1.85 46.52 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.25 -10.83 6.80 99.48 0.68 -10.15 16 7 C -0.52 -29.29 8.87 25.60 0.23 -29.06 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 9 C 0.02 0.83 1.94 -11.44 -0.02 0.81 16 10 H 0.03 1.62 5.27 -2.38 -0.01 1.61 16 11 C -0.11 -4.54 5.26 30.67 0.16 -4.38 16 12 C -0.11 -3.51 6.09 30.64 0.19 -3.33 16 13 C 0.06 1.64 5.31 86.33 0.46 2.10 16 14 N -0.55 -16.87 4.66 -896.06 -4.17 -21.04 16 15 C 0.06 1.40 4.81 86.31 0.41 1.82 16 16 C -0.14 -2.86 3.92 -10.09 -0.04 -2.90 16 17 C 0.04 0.95 8.79 72.30 0.64 1.59 16 18 O -0.41 -9.92 12.46 -148.98 -1.86 -11.78 16 19 C 0.04 0.74 8.79 72.29 0.64 1.38 16 20 C 0.08 3.27 4.73 86.37 0.41 3.68 16 21 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 22 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 25 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.09 2.07 6.11 -2.39 -0.01 2.05 16 27 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.04 0.94 8.12 -2.38 -0.02 0.92 16 29 H 0.08 1.84 7.72 -2.39 -0.02 1.82 16 30 H 0.11 2.08 6.22 -2.39 -0.01 2.06 16 31 H 0.08 1.77 7.92 -2.39 -0.02 1.76 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.09 1.40 8.10 -2.39 -0.02 1.38 16 35 H 0.06 2.37 8.01 -2.39 -0.02 2.35 16 36 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -65.54 282.05 0.66 -64.88 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 1.00 Total: 7.78 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 3.53 Total: -27.06 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -3.87 Total: -80.34 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -1.86 Total: -11.78 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.85 Total: 46.52 kcal Total: -65.54 0.66 -64.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005935.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.725 kcal (2) G-P(sol) polarization free energy of solvation -65.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds