Wall clock time and date at job start Mon Mar 30 2020 03:20:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86803 * 119.99623 * 2 1
4 4 H 1.48508 * 109.46644 * 180.02562 * 3 2 1
5 5 H 1.48493 * 109.47392 * 300.00088 * 3 2 1
6 6 H 1.48495 * 109.46930 * 60.00509 * 3 2 1
7 7 C 1.37878 * 120.00253 * 180.02562 * 2 1 3
8 8 H 1.07995 * 119.99858 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99588 * 359.97438 * 7 2 1
10 10 O 1.42908 * 109.46511 * 180.02562 * 9 7 2
11 11 C 1.42901 * 113.99557 * 179.97438 * 10 9 7
12 12 H 1.08996 * 109.59517 * 329.82166 * 11 10 9
13 13 C 1.52882 * 109.52853 * 90.00164 * 11 10 9
14 14 C 1.52136 * 112.14023 * 183.96257 * 13 11 10
15 15 N 1.47132 * 110.65302 * 297.56864 * 14 13 11
16 16 C 1.46931 * 109.92883 * 95.19726 * 15 14 13
17 17 C 1.51493 * 111.83517 * 275.92082 * 16 15 14
18 18 C 1.52230 * 113.30929 * 7.23577 * 17 16 15
19 19 C 1.51831 * 113.27006 * 309.34724 * 18 17 16
20 20 C 1.44456 * 116.77679 * 324.09984 * 15 14 13
21 21 H 0.96994 * 120.00008 * 359.97438 * 1 2 3
22 22 H 1.08997 * 109.47480 * 60.00712 * 9 7 2
23 23 H 1.08999 * 109.47512 * 299.99993 * 9 7 2
24 24 H 1.09002 * 108.93516 * 304.62233 * 13 11 10
25 25 H 1.08998 * 108.93512 * 63.30494 * 13 11 10
26 26 H 1.09004 * 109.23731 * 57.96431 * 14 13 11
27 27 H 1.08996 * 109.24164 * 177.35608 * 14 13 11
28 28 H 1.09001 * 109.01052 * 155.31539 * 16 15 14
29 29 H 1.08999 * 109.01175 * 36.52756 * 16 15 14
30 30 H 1.08992 * 108.71703 * 246.24667 * 17 16 15
31 31 H 1.09003 * 108.61510 * 128.15266 * 17 16 15
32 32 H 1.08999 * 108.21156 * 190.06384 * 18 17 16
33 33 H 1.08997 * 108.97627 * 158.89360 * 19 18 17
34 34 H 1.09003 * 108.97441 * 277.59569 * 19 18 17
35 35 H 1.08998 * 108.86810 * 188.37933 * 20 15 14
36 36 H 1.08999 * 108.86756 * 306.78945 * 20 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7092 1.3464 -0.0006
5 1 1.8903 2.3965 -1.2124
6 1 1.8904 2.3964 1.2125
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1939 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 8 2.1798 -3.5853 -0.0005
11 6 1.5653 -4.8754 0.0000
12 1 0.6069 -4.8235 0.5165
13 6 1.3450 -5.3372 -1.4406
14 6 0.6049 -6.6645 -1.5104
15 7 1.3904 -7.7310 -0.8699
16 6 0.9602 -7.9012 0.5247
17 6 1.6461 -6.9171 1.4500
18 6 2.4775 -5.8764 0.7131
19 6 3.4369 -6.4805 -0.2967
20 6 2.8251 -7.6656 -1.0253
21 1 -0.4850 0.8400 0.0004
22 1 0.6242 -2.5568 -0.8903
23 1 0.6247 -2.5571 0.8896
24 1 0.7655 -4.5808 -1.9698
25 1 2.3133 -5.4461 -1.9291
26 1 -0.3543 -6.5680 -1.0018
27 1 0.4323 -6.9251 -2.5546
28 1 1.1955 -8.9153 0.8477
29 1 -0.1179 -7.7523 0.5844
30 1 2.2974 -7.4694 2.1272
31 1 0.8851 -6.4042 2.0383
32 1 3.0704 -5.3316 1.4477
33 1 3.7097 -5.7182 -1.0265
34 1 4.3369 -6.8100 0.2226
35 1 3.2641 -8.5839 -0.6355
36 1 3.0614 -7.5871 -2.0865
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261061838.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:20:36
Heat of formation + Delta-G solvation = -50.297066 kcal
Electronic energy + Delta-G solvation = -16399.021979 eV
Core-core repulsion = 13882.583206 eV
Total energy + Delta-G solvation = -2516.438773 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-40.46265 -36.51229 -33.06675 -32.63055 -31.63970 -30.97969 -27.26476 -24.57305
-24.26502 -23.17178 -22.24165 -19.89121 -17.90997 -16.79095 -16.47021 -15.95300
-15.13004 -14.84136 -14.25594 -13.97897 -13.35973 -13.25185 -13.06007 -12.70416
-12.29149 -12.18079 -12.06695 -11.43943 -11.19603 -10.98539 -10.79404 -10.64028
-10.51783 -10.37554 -10.20878 -10.02909 -9.74475 -9.09783 -8.82834 -8.17695
-7.94967 -6.13112 -4.14918 3.27383 3.33848 3.40315 4.07711 4.31236
4.62034 4.83503 4.99287 5.20019 5.23258 5.28085 5.33727 5.38500
5.43549 5.53870 5.65011 5.71123 5.92752 5.99002 6.04707 6.07058
6.14221 6.23025 6.24967 6.36284 6.50774 6.56616 6.73696 7.10423
7.25911 7.41620 7.47453 7.78193 8.14072 8.57855 8.99364 9.50244
10.98428
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.052096 B = 0.006236 C = 0.006122
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 537.341041 B = 4489.262809 C = 4572.642031
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.056 3.944
3 Si 0.907 3.093
4 H -0.270 1.270
5 H -0.282 1.282
6 H -0.282 1.282
7 C -0.515 4.515
8 H 0.066 0.934
9 C 0.196 3.804
10 O -0.389 6.389
11 C 0.097 3.903
12 H 0.048 0.952
13 C -0.178 4.178
14 C 0.073 3.927
15 N -0.561 5.561
16 C 0.065 3.935
17 C -0.141 4.141
18 C -0.083 4.083
19 C -0.146 4.146
20 C 0.081 3.919
21 H 0.263 0.737
22 H 0.005 0.995
23 H 0.003 0.997
24 H 0.068 0.932
25 H 0.074 0.926
26 H 0.068 0.932
27 H 0.071 0.929
28 H 0.067 0.933
29 H 0.069 0.931
30 H 0.061 0.939
31 H 0.064 0.936
32 H 0.077 0.923
33 H 0.075 0.925
34 H 0.057 0.943
35 H 0.067 0.933
36 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.179 -14.889 -0.334 15.051
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.145 4.145
3 Si 0.734 3.266
4 H -0.195 1.195
5 H -0.208 1.208
6 H -0.208 1.208
7 C -0.553 4.553
8 H 0.084 0.916
9 C 0.122 3.878
10 O -0.308 6.308
11 C 0.038 3.962
12 H 0.066 0.934
13 C -0.217 4.217
14 C -0.054 4.054
15 N -0.283 5.283
16 C -0.064 4.064
17 C -0.180 4.180
18 C -0.102 4.102
19 C -0.186 4.186
20 C -0.048 4.048
21 H 0.073 0.927
22 H 0.022 0.978
23 H 0.021 0.979
24 H 0.086 0.914
25 H 0.092 0.908
26 H 0.087 0.913
27 H 0.089 0.911
28 H 0.086 0.914
29 H 0.087 0.913
30 H 0.080 0.920
31 H 0.083 0.917
32 H 0.095 0.905
33 H 0.093 0.907
34 H 0.076 0.924
35 H 0.086 0.914
36 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 2.125 -15.116 -0.576 15.275
hybrid contribution 0.263 1.759 0.442 1.833
sum 2.388 -13.356 -0.134 13.569
Atomic orbital electron populations
1.69973 1.06108 1.27063 1.50628 1.24955 0.94976 0.99448 0.95125
0.86292 0.80030 0.82602 0.77660 1.19486 1.20796 1.20800 1.21105
0.94073 0.89405 1.50712 0.91559 1.20222 0.88744 0.83636 0.95201
1.87895 1.35500 1.12750 1.94681 1.21854 0.95036 0.85574 0.93716
0.93381 1.22592 1.02045 0.97872 0.99187 1.21924 0.95861 0.88218
0.99430 1.59715 1.06909 1.46356 1.15271 1.21835 0.99248 0.98343
0.86928 1.21619 0.99786 0.97759 0.98880 1.20696 0.96727 0.95068
0.97747 1.21835 0.98423 0.99127 0.99170 1.21134 0.86223 0.97213
1.00190 0.92694 0.97767 0.97893 0.91357 0.90787 0.91326 0.91100
0.91431 0.91256 0.92011 0.91689 0.90492 0.90688 0.92435 0.91433
0.91324
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16
2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16
3 Si 0.91 21.98 29.54 -169.99 -5.02 16.96 16
4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16
5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
7 C -0.51 -15.34 9.43 -34.44 -0.32 -15.66 16
8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16
9 C 0.20 5.45 5.50 36.01 0.20 5.65 16
10 O -0.39 -9.52 9.89 -35.23 -0.35 -9.87 16
11 C 0.10 1.86 2.28 -26.77 -0.06 1.80 16
12 H 0.05 0.95 7.28 -51.93 -0.38 0.57 16
13 C -0.18 -3.01 4.96 -27.23 -0.13 -3.14 16
14 C 0.07 1.01 6.05 -4.14 -0.03 0.98 16
15 N -0.56 -7.28 4.62 -238.60 -1.10 -8.38 16
16 C 0.06 0.77 5.95 -4.57 -0.03 0.74 16
17 C -0.14 -1.85 5.34 -27.89 -0.15 -2.00 16
18 C -0.08 -1.33 2.53 -91.58 -0.23 -1.56 16
19 C -0.15 -2.07 5.15 -27.85 -0.14 -2.21 16
20 C 0.08 1.00 5.37 -5.66 -0.03 0.97 16
21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
22 H 0.00 0.13 7.76 -51.93 -0.40 -0.27 16
23 H 0.00 0.09 8.09 -51.93 -0.42 -0.33 16
24 H 0.07 1.26 7.76 -51.93 -0.40 0.86 16
25 H 0.07 1.25 5.26 -51.93 -0.27 0.97 16
26 H 0.07 0.92 7.18 -51.93 -0.37 0.55 16
27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
29 H 0.07 0.79 7.29 -51.93 -0.38 0.41 16
30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
31 H 0.06 0.87 7.84 -51.93 -0.41 0.46 16
32 H 0.08 1.34 8.00 -51.93 -0.42 0.93 16
33 H 0.07 1.19 6.32 -51.93 -0.33 0.86 16
34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
36 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16
LS Contribution 274.35 15.07 4.13 4.13
Total: -1.00 -30.81 274.35 -8.48 -39.30
By element:
Atomic # 1 Polarization: 2.95 SS G_CDS: -5.86 Total: -2.91 kcal
Atomic # 6 Polarization: -11.87 SS G_CDS: -1.03 Total: -12.89 kcal
Atomic # 7 Polarization: -34.35 SS G_CDS: -0.37 Total: -34.72 kcal
Atomic # 8 Polarization: -9.52 SS G_CDS: -0.35 Total: -9.87 kcal
Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal
Total LS contribution 4.13 Total: 4.13 kcal
Total: -30.81 -8.48 -39.30 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261061838.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.000 kcal
(2) G-P(sol) polarization free energy of solvation -30.812 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.812 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.297 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds