Wall clock time and date at job start Mon Mar 30 2020 03:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99623 * 2 1 4 4 H 1.48508 * 109.46644 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47392 * 300.00088 * 3 2 1 6 6 H 1.48495 * 109.46930 * 60.00509 * 3 2 1 7 7 C 1.37878 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99858 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99588 * 359.97438 * 7 2 1 10 10 O 1.42908 * 109.46511 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99557 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.59517 * 329.82166 * 11 10 9 13 13 C 1.52882 * 109.52853 * 90.00164 * 11 10 9 14 14 C 1.52136 * 112.14023 * 183.96257 * 13 11 10 15 15 N 1.47132 * 110.65302 * 297.56864 * 14 13 11 16 16 C 1.46931 * 109.92883 * 95.19726 * 15 14 13 17 17 C 1.51493 * 111.83517 * 275.92082 * 16 15 14 18 18 C 1.52230 * 113.30929 * 7.23577 * 17 16 15 19 19 C 1.51831 * 113.27006 * 309.34724 * 18 17 16 20 20 C 1.44456 * 116.77679 * 324.09984 * 15 14 13 21 21 H 0.96994 * 120.00008 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47480 * 60.00712 * 9 7 2 23 23 H 1.08999 * 109.47512 * 299.99993 * 9 7 2 24 24 H 1.09002 * 108.93516 * 304.62233 * 13 11 10 25 25 H 1.08998 * 108.93512 * 63.30494 * 13 11 10 26 26 H 1.09004 * 109.23731 * 57.96431 * 14 13 11 27 27 H 1.08996 * 109.24164 * 177.35608 * 14 13 11 28 28 H 1.09001 * 109.01052 * 155.31539 * 16 15 14 29 29 H 1.08999 * 109.01175 * 36.52756 * 16 15 14 30 30 H 1.08992 * 108.71703 * 246.24667 * 17 16 15 31 31 H 1.09003 * 108.61510 * 128.15266 * 17 16 15 32 32 H 1.08999 * 108.21156 * 190.06384 * 18 17 16 33 33 H 1.08997 * 108.97627 * 158.89360 * 19 18 17 34 34 H 1.09003 * 108.97441 * 277.59569 * 19 18 17 35 35 H 1.08998 * 108.86810 * 188.37933 * 20 15 14 36 36 H 1.08999 * 108.86756 * 306.78945 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1798 -3.5853 -0.0005 11 6 1.5653 -4.8754 0.0000 12 1 0.6069 -4.8235 0.5165 13 6 1.3450 -5.3372 -1.4406 14 6 0.6049 -6.6645 -1.5104 15 7 1.3904 -7.7310 -0.8699 16 6 0.9602 -7.9012 0.5247 17 6 1.6461 -6.9171 1.4500 18 6 2.4775 -5.8764 0.7131 19 6 3.4369 -6.4805 -0.2967 20 6 2.8251 -7.6656 -1.0253 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 0.7655 -4.5808 -1.9698 25 1 2.3133 -5.4461 -1.9291 26 1 -0.3543 -6.5680 -1.0018 27 1 0.4323 -6.9251 -2.5546 28 1 1.1955 -8.9153 0.8477 29 1 -0.1179 -7.7523 0.5844 30 1 2.2974 -7.4694 2.1272 31 1 0.8851 -6.4042 2.0383 32 1 3.0704 -5.3316 1.4477 33 1 3.7097 -5.7182 -1.0265 34 1 4.3369 -6.8100 0.2226 35 1 3.2641 -8.5839 -0.6355 36 1 3.0614 -7.5871 -2.0865 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261061838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:36 Heat of formation + Delta-G solvation = -50.297066 kcal Electronic energy + Delta-G solvation = -16399.021979 eV Core-core repulsion = 13882.583206 eV Total energy + Delta-G solvation = -2516.438773 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.46265 -36.51229 -33.06675 -32.63055 -31.63970 -30.97969 -27.26476 -24.57305 -24.26502 -23.17178 -22.24165 -19.89121 -17.90997 -16.79095 -16.47021 -15.95300 -15.13004 -14.84136 -14.25594 -13.97897 -13.35973 -13.25185 -13.06007 -12.70416 -12.29149 -12.18079 -12.06695 -11.43943 -11.19603 -10.98539 -10.79404 -10.64028 -10.51783 -10.37554 -10.20878 -10.02909 -9.74475 -9.09783 -8.82834 -8.17695 -7.94967 -6.13112 -4.14918 3.27383 3.33848 3.40315 4.07711 4.31236 4.62034 4.83503 4.99287 5.20019 5.23258 5.28085 5.33727 5.38500 5.43549 5.53870 5.65011 5.71123 5.92752 5.99002 6.04707 6.07058 6.14221 6.23025 6.24967 6.36284 6.50774 6.56616 6.73696 7.10423 7.25911 7.41620 7.47453 7.78193 8.14072 8.57855 8.99364 9.50244 10.98428 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.052096 B = 0.006236 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.341041 B = 4489.262809 C = 4572.642031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.066 0.934 9 C 0.196 3.804 10 O -0.389 6.389 11 C 0.097 3.903 12 H 0.048 0.952 13 C -0.178 4.178 14 C 0.073 3.927 15 N -0.561 5.561 16 C 0.065 3.935 17 C -0.141 4.141 18 C -0.083 4.083 19 C -0.146 4.146 20 C 0.081 3.919 21 H 0.263 0.737 22 H 0.005 0.995 23 H 0.003 0.997 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.179 -14.889 -0.334 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.122 3.878 10 O -0.308 6.308 11 C 0.038 3.962 12 H 0.066 0.934 13 C -0.217 4.217 14 C -0.054 4.054 15 N -0.283 5.283 16 C -0.064 4.064 17 C -0.180 4.180 18 C -0.102 4.102 19 C -0.186 4.186 20 C -0.048 4.048 21 H 0.073 0.927 22 H 0.022 0.978 23 H 0.021 0.979 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.125 -15.116 -0.576 15.275 hybrid contribution 0.263 1.759 0.442 1.833 sum 2.388 -13.356 -0.134 13.569 Atomic orbital electron populations 1.69973 1.06108 1.27063 1.50628 1.24955 0.94976 0.99448 0.95125 0.86292 0.80030 0.82602 0.77660 1.19486 1.20796 1.20800 1.21105 0.94073 0.89405 1.50712 0.91559 1.20222 0.88744 0.83636 0.95201 1.87895 1.35500 1.12750 1.94681 1.21854 0.95036 0.85574 0.93716 0.93381 1.22592 1.02045 0.97872 0.99187 1.21924 0.95861 0.88218 0.99430 1.59715 1.06909 1.46356 1.15271 1.21835 0.99248 0.98343 0.86928 1.21619 0.99786 0.97759 0.98880 1.20696 0.96727 0.95068 0.97747 1.21835 0.98423 0.99127 0.99170 1.21134 0.86223 0.97213 1.00190 0.92694 0.97767 0.97893 0.91357 0.90787 0.91326 0.91100 0.91431 0.91256 0.92011 0.91689 0.90492 0.90688 0.92435 0.91433 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -15.34 9.43 -34.44 -0.32 -15.66 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.20 5.45 5.50 36.01 0.20 5.65 16 10 O -0.39 -9.52 9.89 -35.23 -0.35 -9.87 16 11 C 0.10 1.86 2.28 -26.77 -0.06 1.80 16 12 H 0.05 0.95 7.28 -51.93 -0.38 0.57 16 13 C -0.18 -3.01 4.96 -27.23 -0.13 -3.14 16 14 C 0.07 1.01 6.05 -4.14 -0.03 0.98 16 15 N -0.56 -7.28 4.62 -238.60 -1.10 -8.38 16 16 C 0.06 0.77 5.95 -4.57 -0.03 0.74 16 17 C -0.14 -1.85 5.34 -27.89 -0.15 -2.00 16 18 C -0.08 -1.33 2.53 -91.58 -0.23 -1.56 16 19 C -0.15 -2.07 5.15 -27.85 -0.14 -2.21 16 20 C 0.08 1.00 5.37 -5.66 -0.03 0.97 16 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.00 0.13 7.76 -51.93 -0.40 -0.27 16 23 H 0.00 0.09 8.09 -51.93 -0.42 -0.33 16 24 H 0.07 1.26 7.76 -51.93 -0.40 0.86 16 25 H 0.07 1.25 5.26 -51.93 -0.27 0.97 16 26 H 0.07 0.92 7.18 -51.93 -0.37 0.55 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.79 7.29 -51.93 -0.38 0.41 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.87 7.84 -51.93 -0.41 0.46 16 32 H 0.08 1.34 8.00 -51.93 -0.42 0.93 16 33 H 0.07 1.19 6.32 -51.93 -0.33 0.86 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 LS Contribution 274.35 15.07 4.13 4.13 Total: -1.00 -30.81 274.35 -8.48 -39.30 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -5.86 Total: -2.91 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -1.03 Total: -12.89 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.37 Total: -34.72 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.35 Total: -9.87 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.81 -8.48 -39.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261061838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.000 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds