Wall clock time and date at job start Mon Mar 30 2020 03:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99623 * 2 1 4 4 H 1.48508 * 109.46644 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47392 * 300.00088 * 3 2 1 6 6 H 1.48495 * 109.46930 * 60.00509 * 3 2 1 7 7 C 1.37878 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99858 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99588 * 359.97438 * 7 2 1 10 10 O 1.42908 * 109.46511 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99557 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.59517 * 329.82166 * 11 10 9 13 13 C 1.52882 * 109.52853 * 90.00164 * 11 10 9 14 14 C 1.52136 * 112.14023 * 183.96257 * 13 11 10 15 15 N 1.47132 * 110.65302 * 297.56864 * 14 13 11 16 16 C 1.46931 * 109.92883 * 95.19726 * 15 14 13 17 17 C 1.51493 * 111.83517 * 275.92082 * 16 15 14 18 18 C 1.52230 * 113.30929 * 7.23577 * 17 16 15 19 19 C 1.51831 * 113.27006 * 309.34724 * 18 17 16 20 20 C 1.44456 * 116.77679 * 324.09984 * 15 14 13 21 21 H 0.96994 * 120.00008 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47480 * 60.00712 * 9 7 2 23 23 H 1.08999 * 109.47512 * 299.99993 * 9 7 2 24 24 H 1.09002 * 108.93516 * 304.62233 * 13 11 10 25 25 H 1.08998 * 108.93512 * 63.30494 * 13 11 10 26 26 H 1.09004 * 109.23731 * 57.96431 * 14 13 11 27 27 H 1.08996 * 109.24164 * 177.35608 * 14 13 11 28 28 H 1.09001 * 109.01052 * 155.31539 * 16 15 14 29 29 H 1.08999 * 109.01175 * 36.52756 * 16 15 14 30 30 H 1.08992 * 108.71703 * 246.24667 * 17 16 15 31 31 H 1.09003 * 108.61510 * 128.15266 * 17 16 15 32 32 H 1.08999 * 108.21156 * 190.06384 * 18 17 16 33 33 H 1.08997 * 108.97627 * 158.89360 * 19 18 17 34 34 H 1.09003 * 108.97441 * 277.59569 * 19 18 17 35 35 H 1.08998 * 108.86810 * 188.37933 * 20 15 14 36 36 H 1.08999 * 108.86756 * 306.78945 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1798 -3.5853 -0.0005 11 6 1.5653 -4.8754 0.0000 12 1 0.6069 -4.8235 0.5165 13 6 1.3450 -5.3372 -1.4406 14 6 0.6049 -6.6645 -1.5104 15 7 1.3904 -7.7310 -0.8699 16 6 0.9602 -7.9012 0.5247 17 6 1.6461 -6.9171 1.4500 18 6 2.4775 -5.8764 0.7131 19 6 3.4369 -6.4805 -0.2967 20 6 2.8251 -7.6656 -1.0253 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 0.7655 -4.5808 -1.9698 25 1 2.3133 -5.4461 -1.9291 26 1 -0.3543 -6.5680 -1.0018 27 1 0.4323 -6.9251 -2.5546 28 1 1.1955 -8.9153 0.8477 29 1 -0.1179 -7.7523 0.5844 30 1 2.2974 -7.4694 2.1272 31 1 0.8851 -6.4042 2.0383 32 1 3.0704 -5.3316 1.4477 33 1 3.7097 -5.7182 -1.0265 34 1 4.3369 -6.8100 0.2226 35 1 3.2641 -8.5839 -0.6355 36 1 3.0614 -7.5871 -2.0865 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261061838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:36 Heat of formation + Delta-G solvation = -71.103205 kcal Electronic energy + Delta-G solvation = -16399.924201 eV Core-core repulsion = 13882.583206 eV Total energy + Delta-G solvation = -2517.340995 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.69438 -38.31074 -35.07389 -34.00632 -33.01644 -32.12514 -29.44454 -25.89593 -25.61850 -24.52663 -24.07048 -21.20668 -19.17902 -18.67161 -17.98437 -17.52250 -16.76635 -16.20225 -16.05369 -15.60525 -14.96998 -14.46456 -14.30863 -14.06512 -13.74984 -13.73590 -13.17455 -13.10062 -13.02434 -12.85563 -12.35084 -12.21100 -11.89011 -11.79999 -11.66982 -11.31696 -11.18059 -11.16489 -10.86599 -10.20882 -9.04575 -8.37876 -6.51343 1.36017 1.37822 1.52522 2.30058 2.95496 3.00976 3.03206 3.62212 3.74563 3.97124 4.09521 4.15232 4.21350 4.27876 4.38166 4.42183 4.49762 4.64687 4.74031 4.79748 4.92675 5.00083 5.01034 5.05065 5.10339 5.12977 5.19110 5.24599 5.28442 5.45246 5.51989 5.90229 6.21294 6.43209 6.49165 6.77119 7.21297 8.74776 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.052096 B = 0.006236 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.341041 B = 4489.262809 C = 4572.642031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.552 4.552 8 H 0.060 0.940 9 C 0.215 3.785 10 O -0.405 6.405 11 C 0.085 3.915 12 H 0.035 0.965 13 C -0.170 4.170 14 C 0.079 3.921 15 N -0.557 5.557 16 C 0.063 3.937 17 C -0.137 4.137 18 C -0.080 4.080 19 C -0.143 4.143 20 C 0.082 3.918 21 H 0.272 0.728 22 H -0.016 1.016 23 H -0.020 1.020 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.906 -15.958 -0.329 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.589 4.589 8 H 0.078 0.922 9 C 0.140 3.860 10 O -0.325 6.325 11 C 0.027 3.973 12 H 0.054 0.946 13 C -0.209 4.209 14 C -0.048 4.048 15 N -0.279 5.279 16 C -0.065 4.065 17 C -0.176 4.176 18 C -0.099 4.099 19 C -0.182 4.182 20 C -0.046 4.046 21 H 0.081 0.919 22 H 0.002 0.998 23 H -0.002 1.002 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.847 -16.217 -0.571 16.475 hybrid contribution 0.016 2.049 0.461 2.100 sum 2.863 -14.168 -0.110 14.454 Atomic orbital electron populations 1.70076 1.07805 1.28729 1.50302 1.25999 0.95998 1.03482 0.93703 0.85110 0.78570 0.77095 0.78474 1.18897 1.19408 1.19410 1.21417 0.94028 0.90904 1.52567 0.92184 1.19787 0.88502 0.84708 0.93007 1.87844 1.35568 1.14266 1.94858 1.22262 0.95241 0.84021 0.95771 0.94638 1.22543 1.02189 0.99189 0.97010 1.21915 0.95629 0.86516 1.00782 1.59809 1.07161 1.45082 1.15819 1.21954 0.99429 0.99139 0.85937 1.21605 0.99628 0.97259 0.99088 1.20719 0.96607 0.95000 0.97604 1.21814 0.98770 0.99249 0.98362 1.21216 0.85736 0.97189 1.00483 0.91910 0.99829 1.00219 0.93864 0.90756 0.90975 0.89453 0.88826 0.90801 0.89787 0.92517 0.92671 0.93090 0.90615 0.88877 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.99 45.11 29.54 68.60 2.03 47.13 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -33.95 9.43 25.60 0.24 -33.71 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 9 C 0.21 12.61 5.50 71.24 0.39 13.00 16 10 O -0.41 -20.93 9.89 -148.98 -1.47 -22.40 16 11 C 0.09 3.38 2.28 30.57 0.07 3.45 16 12 H 0.04 1.48 7.28 -2.39 -0.02 1.46 16 13 C -0.17 -5.89 4.96 30.27 0.15 -5.74 16 14 C 0.08 2.09 6.05 85.97 0.52 2.61 16 15 N -0.56 -12.97 4.62 -908.80 -4.20 -17.17 16 16 C 0.06 1.32 5.95 85.80 0.51 1.83 16 17 C -0.14 -3.35 5.34 29.85 0.16 -3.19 16 18 C -0.08 -2.55 2.53 -11.42 -0.03 -2.57 16 19 C -0.14 -3.86 5.15 29.87 0.15 -3.70 16 20 C 0.08 1.80 5.37 86.42 0.46 2.27 16 21 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 22 H -0.02 -0.98 7.76 -2.39 -0.02 -1.00 16 23 H -0.02 -1.23 8.09 -2.39 -0.02 -1.25 16 24 H 0.04 1.68 7.76 -2.39 -0.02 1.66 16 25 H 0.07 2.55 5.26 -2.39 -0.01 2.54 16 26 H 0.07 1.86 7.18 -2.39 -0.02 1.84 16 27 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.50 7.29 -2.39 -0.02 1.48 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.48 7.84 -2.39 -0.02 1.46 16 32 H 0.05 1.97 8.00 -2.39 -0.02 1.95 16 33 H 0.05 1.62 6.32 -2.39 -0.02 1.60 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.58 8.06 -2.39 -0.02 1.56 16 Total: -1.00 -67.74 274.35 0.77 -66.97 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.04 Total: 7.00 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: 3.09 Total: -24.89 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -3.92 Total: -73.81 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -1.47 Total: -22.40 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -67.74 0.77 -66.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261061838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.129 kcal (2) G-P(sol) polarization free energy of solvation -67.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds