Wall clock time and date at job start Mon Mar 30 2020 02:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 119.99711 * 2 1 4 4 H 1.48499 * 109.46771 * 239.99891 * 3 2 1 5 5 H 1.48498 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47280 * 119.99538 * 3 2 1 7 7 C 1.37875 * 120.00435 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99972 * 173.56575 * 7 2 1 9 9 C 1.50692 * 120.00003 * 353.84535 * 7 2 1 10 10 H 1.08998 * 109.47470 * 358.03124 * 9 7 2 11 11 C 1.53003 * 109.47272 * 118.02902 * 9 7 2 12 12 C 1.54268 * 110.02845 * 57.44320 * 11 9 7 13 13 C 1.54887 * 104.19170 * 217.10330 * 12 11 9 14 14 C 1.54895 * 102.75205 * 37.94273 * 13 12 11 15 15 C 1.53869 * 110.03403 * 300.27448 * 11 9 7 16 16 N 1.46897 * 109.47233 * 238.02981 * 9 7 2 17 17 C 1.47486 * 111.00175 * 155.96836 * 16 9 7 18 18 C 1.53514 * 87.93203 * 221.29866 * 17 16 9 19 19 O 1.42901 * 114.17121 * 272.37587 * 18 17 16 20 20 C 1.47483 * 111.00283 * 60.00018 * 16 9 7 21 21 H 0.96995 * 120.00363 * 5.03549 * 1 2 3 22 22 H 1.08998 * 110.01745 * 178.87809 * 11 9 7 23 23 H 1.08993 * 110.48961 * 335.77958 * 12 11 9 24 24 H 1.08997 * 110.48661 * 98.43115 * 12 11 9 25 25 H 1.08999 * 110.76148 * 279.62748 * 13 12 11 26 26 H 1.08999 * 110.91644 * 156.33000 * 13 12 11 27 27 H 1.08992 * 110.48723 * 203.37967 * 14 13 12 28 28 H 1.08998 * 110.59836 * 80.78612 * 14 13 12 29 29 H 1.09006 * 110.03413 * 238.56832 * 15 11 9 30 30 H 1.09003 * 110.03046 * 0.02562 * 15 11 9 31 31 H 1.08998 * 113.47524 * 336.07118 * 17 16 9 32 32 H 1.09001 * 113.47398 * 106.53140 * 17 16 9 33 33 H 1.09005 * 114.16921 * 139.67498 * 18 17 16 34 34 H 0.96707 * 114.00052 * 273.84718 * 19 18 17 35 35 H 1.09000 * 113.47737 * 253.47618 * 20 16 9 36 36 H 1.09004 * 113.47244 * 23.87234 * 20 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0795 -1.1969 -0.1043 9 6 1.2577 -2.4952 0.1410 10 1 0.1940 -2.2922 0.2648 11 6 1.4721 -3.3444 -1.1135 12 6 2.9793 -3.5859 -1.3369 13 6 3.1487 -3.5316 -2.8755 14 6 2.1723 -2.4019 -3.2873 15 6 0.9590 -2.5916 -2.3536 16 7 1.7574 -3.2223 1.3156 17 6 0.7417 -4.1611 1.8277 18 6 1.1388 -3.7298 3.2465 19 8 2.2208 -4.4783 3.8042 20 6 1.5669 -2.4325 2.5465 21 1 -0.4850 0.8367 -0.0737 22 1 0.9515 -4.2967 -1.0129 23 1 3.5662 -2.8007 -0.8606 24 1 3.2694 -4.5650 -0.9555 25 1 2.8574 -4.4786 -3.3299 26 1 4.1729 -3.2743 -3.1454 27 1 1.8735 -2.5169 -4.3291 28 1 2.6275 -1.4245 -3.1275 29 1 0.1900 -3.1790 -2.8553 30 1 0.5577 -1.6211 -2.0616 31 1 -0.2784 -3.8858 1.5596 32 1 0.9676 -5.2053 1.6120 33 1 0.2972 -3.6120 3.9291 34 1 1.9484 -5.2951 4.2444 35 1 2.4923 -2.0117 2.9400 36 1 0.7678 -1.6951 2.4700 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261111863.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:40 Heat of formation + Delta-G solvation = -43.520781 kcal Electronic energy + Delta-G solvation = -16659.042042 eV Core-core repulsion = 14142.897111 eV Total energy + Delta-G solvation = -2516.144931 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.04419 -38.80071 -36.33965 -34.62927 -31.73934 -29.28128 -28.00168 -27.19556 -26.27495 -23.22082 -21.43021 -20.64299 -20.17976 -18.49325 -17.94624 -16.97931 -16.52441 -15.99785 -15.78880 -15.53292 -14.67664 -14.41313 -14.05684 -13.91203 -13.61589 -13.25477 -12.83397 -12.74338 -12.55957 -12.14407 -11.91804 -11.71704 -11.68126 -11.59409 -11.22571 -11.10152 -10.99457 -10.72122 -10.57160 -10.43552 -9.29936 -8.09102 -6.15317 1.38342 1.40636 1.46833 2.42165 3.06156 3.28195 3.51558 3.81179 4.06380 4.08630 4.15042 4.22364 4.63979 4.69296 4.76667 4.79965 4.83561 4.93585 4.96126 4.99807 5.07037 5.10937 5.20294 5.28772 5.33460 5.36998 5.55571 5.61962 5.70954 5.74496 5.85454 6.06061 6.41498 6.68712 7.00999 7.03265 7.50724 8.96680 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.018696 B = 0.013436 C = 0.009106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.259765 B = 2083.420783 C = 3074.136705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.030 3.970 3 Si 0.933 3.067 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.487 4.487 8 H 0.044 0.956 9 C 0.172 3.828 10 H 0.015 0.985 11 C -0.067 4.067 12 C -0.093 4.093 13 C -0.116 4.116 14 C -0.111 4.111 15 C -0.110 4.110 16 N -0.475 5.475 17 C -0.033 4.033 18 C 0.088 3.912 19 O -0.554 6.554 20 C 0.028 3.972 21 H 0.260 0.740 22 H 0.035 0.965 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.395 0.605 35 H 0.056 0.944 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.837 -7.639 0.991 7.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.169 4.169 3 Si 0.760 3.240 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.065 3.935 10 H 0.033 0.967 11 C -0.086 4.086 12 C -0.131 4.131 13 C -0.154 4.154 14 C -0.149 4.149 15 C -0.148 4.148 16 N -0.198 5.198 17 C -0.162 4.162 18 C 0.029 3.971 19 O -0.362 6.362 20 C -0.102 4.102 21 H 0.069 0.931 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.245 0.755 35 H 0.075 0.925 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.695 -7.243 0.575 7.461 hybrid contribution -0.948 1.196 0.288 1.553 sum 0.747 -6.047 0.863 6.153 Atomic orbital electron populations 1.69963 1.06750 1.27298 1.52069 1.25463 0.95344 1.01346 0.94774 0.85992 0.78751 0.80582 0.78671 1.19909 1.21163 1.20236 1.20965 0.92899 0.90620 1.48094 0.93826 1.20009 0.94315 0.91257 0.87890 0.96666 1.21579 0.95816 0.95743 0.95482 1.22104 0.95985 0.99694 0.95300 1.22476 0.98856 0.98380 0.95676 1.22201 0.96044 0.98306 0.98324 1.21997 0.97232 1.00314 0.95247 1.69024 1.38231 1.10364 1.02211 1.24415 0.95570 0.99684 0.96566 1.22815 0.89357 0.92415 0.92561 1.86488 1.33761 1.39930 1.75980 1.23381 1.00043 0.94881 0.91864 0.93053 0.94623 0.93137 0.93241 0.90855 0.91551 0.91127 0.93788 0.93372 0.92774 0.92398 0.89746 0.88862 0.75468 0.92515 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.48 12.39 21.45 0.27 -51.21 16 2 C 0.03 1.61 5.05 84.65 0.43 2.04 16 3 Si 0.93 43.59 29.55 68.60 2.03 45.62 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.49 -25.87 5.95 25.60 0.15 -25.72 16 8 H 0.04 2.42 6.41 -2.91 -0.02 2.41 16 9 C 0.17 8.41 1.15 44.17 0.05 8.46 16 10 H 0.02 0.85 6.31 -2.39 -0.02 0.84 16 11 C -0.07 -2.91 2.87 -10.07 -0.03 -2.94 16 12 C -0.09 -3.75 5.88 31.67 0.19 -3.56 16 13 C -0.12 -3.91 6.91 31.89 0.22 -3.69 16 14 C -0.11 -4.10 6.83 31.67 0.22 -3.88 16 15 C -0.11 -4.66 6.02 31.32 0.19 -4.47 16 16 N -0.48 -21.21 5.82 -907.34 -5.28 -26.50 16 17 C -0.03 -1.19 7.34 83.57 0.61 -0.58 16 18 C 0.09 2.91 5.56 30.94 0.17 3.08 16 19 O -0.55 -16.99 13.71 -148.98 -2.04 -19.03 16 20 C 0.03 1.20 6.70 83.57 0.56 1.76 16 21 H 0.26 14.08 8.32 -92.71 -0.77 13.31 16 22 H 0.04 1.49 8.04 -2.39 -0.02 1.47 16 23 H 0.05 2.31 5.90 -2.39 -0.01 2.30 16 24 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.76 16 29 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.05 2.71 6.52 -2.39 -0.02 2.70 16 31 H 0.06 2.18 7.54 -2.39 -0.02 2.16 16 32 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.40 7.31 9.12 -74.05 -0.68 6.63 16 35 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.06 2.78 7.89 -2.38 -0.02 2.76 16 Total: -1.00 -61.03 282.38 -1.89 -62.93 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.38 Total: 17.69 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 2.76 Total: -29.49 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -5.02 Total: -77.71 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -2.04 Total: -19.03 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -61.03 -1.89 -62.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111863.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.405 kcal (2) G-P(sol) polarization free energy of solvation -61.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds