Wall clock time and date at job start Mon Mar 30 2020 03:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00039 * 2 1 4 4 H 1.48501 * 109.46889 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47192 * 299.99639 * 3 2 1 6 6 H 1.48504 * 109.47325 * 60.00032 * 3 2 1 7 7 C 1.37876 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00001 * 185.19163 * 7 2 1 9 9 C 1.50704 * 119.99919 * 5.18495 * 7 2 1 10 10 H 1.08996 * 109.46871 * 354.92298 * 9 7 2 11 11 N 1.46906 * 109.46952 * 234.92392 * 9 7 2 12 12 C 1.46903 * 110.99629 * 154.99886 * 11 9 7 13 13 C 1.52994 * 109.47051 * 179.97438 * 12 11 9 14 14 H 1.08999 * 110.33627 * 307.25345 * 13 12 11 15 15 C 1.54474 * 110.37586 * 185.00275 * 13 12 11 16 16 C 1.54511 * 104.06591 * 217.19231 * 15 13 12 17 17 C 1.54479 * 104.06189 * 359.97438 * 16 15 13 18 18 O 1.44424 * 104.80307 * 23.98085 * 17 16 15 19 19 C 1.52995 * 109.46999 * 114.92762 * 9 7 2 20 20 C 1.53004 * 117.49885 * 3.39873 * 19 9 7 21 21 C 1.52997 * 117.49722 * 294.74014 * 19 9 7 22 22 H 0.97003 * 119.99483 * 359.97438 * 1 2 3 23 23 H 1.00894 * 111.00056 * 278.95553 * 11 9 7 24 24 H 1.09000 * 109.47511 * 300.00476 * 12 11 9 25 25 H 1.09004 * 109.46772 * 60.00307 * 12 11 9 26 26 H 1.09004 * 110.51136 * 335.83868 * 15 13 12 27 27 H 1.09000 * 110.51365 * 98.40674 * 15 13 12 28 28 H 1.09001 * 110.50985 * 118.64301 * 16 15 13 29 29 H 1.09002 * 110.51103 * 241.21646 * 16 15 13 30 30 H 1.08998 * 110.36800 * 142.80999 * 17 16 15 31 31 H 1.08994 * 110.37142 * 265.14583 * 17 16 15 32 32 H 1.09001 * 115.55248 * 149.06614 * 19 9 7 33 33 H 1.09001 * 117.49900 * 359.97438 * 20 19 9 34 34 H 1.08997 * 117.49912 * 145.02260 * 20 19 9 35 35 H 1.09003 * 117.50024 * 214.98034 * 21 19 9 36 36 H 1.08996 * 117.50340 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0812 -1.1960 0.0852 9 6 1.2555 -2.4965 -0.1168 10 1 0.1832 -2.3017 -0.1010 11 7 1.6114 -3.3692 1.0101 12 6 0.5412 -4.3375 1.2843 13 6 0.9475 -5.2270 2.4609 14 1 1.9280 -5.6681 2.2815 15 6 -0.1064 -6.3334 2.6878 16 6 -0.1717 -6.4804 4.2245 17 6 0.8510 -5.4459 4.7443 18 8 0.9540 -4.4661 3.6883 19 6 1.6299 -3.1834 -1.4317 20 6 2.6945 -2.5117 -2.3015 21 6 1.2259 -2.4867 -2.7326 22 1 -0.4849 0.8401 0.0004 23 1 2.4887 -3.8380 0.8414 24 1 -0.3768 -3.8043 1.5314 25 1 0.3759 -4.9559 0.4020 26 1 -1.0744 -6.0258 2.2921 27 1 0.2145 -7.2671 2.2260 28 1 -1.1719 -6.2454 4.5885 29 1 0.1158 -7.4882 4.5243 30 1 0.4872 -4.9799 5.6601 31 1 1.8168 -5.9208 4.9169 32 1 1.6068 -4.2730 -1.4161 33 1 3.1278 -1.5803 -1.9371 34 1 3.3715 -3.1594 -2.8584 35 1 0.9374 -3.1180 -3.5730 36 1 0.6931 -1.5393 -2.6517 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261137217.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:33 Heat of formation + Delta-G solvation = -23.979459 kcal Electronic energy + Delta-G solvation = -15868.526996 eV Core-core repulsion = 13353.229440 eV Total energy + Delta-G solvation = -2515.297556 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.08977 -37.09588 -33.93348 -32.28864 -31.79526 -29.56960 -26.45856 -24.09019 -22.60835 -21.49959 -21.20138 -20.61532 -19.12261 -16.43822 -16.10637 -15.28821 -15.24797 -14.66176 -14.55527 -13.87513 -13.51714 -13.18752 -12.70320 -12.19557 -11.86945 -11.57962 -11.39684 -11.24842 -10.93734 -10.89167 -10.59044 -10.50297 -10.38288 -10.22380 -9.69426 -9.47831 -9.36892 -9.16361 -8.56131 -8.40171 -7.00756 -5.93285 -3.94030 3.35301 3.43684 3.47520 4.22446 4.48008 4.76798 4.84345 4.95581 5.08045 5.19712 5.36120 5.44066 5.69554 5.73862 5.81860 5.88032 5.93254 5.95378 6.07535 6.14191 6.17731 6.22842 6.27396 6.56437 6.57418 6.65128 7.05519 7.25497 7.27468 7.38073 7.50758 7.94688 8.26386 8.73917 8.76162 9.15185 9.67006 11.14593 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.007408 C = 0.006366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.006105 B = 3778.942598 C = 4397.352821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.480 4.480 8 H 0.055 0.945 9 C 0.221 3.779 10 H 0.079 0.921 11 N -0.668 5.668 12 C 0.065 3.935 13 C 0.081 3.919 14 H 0.060 0.940 15 C -0.152 4.152 16 C -0.154 4.154 17 C 0.039 3.961 18 O -0.347 6.347 19 C -0.172 4.172 20 C -0.173 4.173 21 C -0.176 4.176 22 H 0.259 0.741 23 H 0.315 0.685 24 H 0.074 0.926 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.313 -11.619 3.301 12.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.519 4.519 8 H 0.073 0.927 9 C 0.114 3.886 10 H 0.097 0.903 11 N -0.296 5.296 12 C -0.065 4.065 13 C 0.022 3.978 14 H 0.078 0.922 15 C -0.191 4.191 16 C -0.192 4.192 17 C -0.039 4.039 18 O -0.265 6.265 19 C -0.193 4.193 20 C -0.210 4.210 21 C -0.214 4.214 22 H 0.069 0.931 23 H 0.132 0.868 24 H 0.093 0.907 25 H 0.043 0.957 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.053 -10.798 3.811 11.451 hybrid contribution 0.487 -0.109 -0.789 0.934 sum 0.434 -10.907 3.022 11.326 Atomic orbital electron populations 1.69903 1.05906 1.26364 1.50990 1.24944 0.94809 0.99115 0.94698 0.86582 0.80248 0.83989 0.77426 1.19721 1.21176 1.21085 1.20868 0.93049 0.89573 1.48384 0.92695 1.19158 0.99410 0.89402 0.80592 0.90330 1.61185 1.02528 1.20473 1.45442 1.22005 0.97773 0.93705 0.93029 1.23066 0.96916 0.90861 0.86915 0.92219 1.22994 1.00927 0.99276 0.95863 1.22924 1.00668 0.99724 0.95892 1.23362 0.97502 0.90304 0.92688 1.89366 1.94677 1.28368 1.14077 1.23474 1.03965 0.95744 0.96084 1.22937 0.91040 1.03612 1.03378 1.22660 0.98797 1.02842 0.97085 0.93077 0.86846 0.90728 0.95670 0.90560 0.91047 0.90948 0.91144 0.89600 0.92941 0.91628 0.87136 0.91944 0.91560 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 12.62 55.43 0.70 -25.33 16 2 C 0.07 1.85 5.45 -17.82 -0.10 1.76 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.48 -13.09 6.48 -34.44 -0.22 -13.32 16 8 H 0.05 1.52 7.42 -52.48 -0.39 1.13 16 9 C 0.22 5.52 2.67 -68.86 -0.18 5.33 16 10 H 0.08 2.23 6.58 -51.93 -0.34 1.88 16 11 N -0.67 -15.09 6.23 -107.95 -0.67 -15.76 16 12 C 0.06 1.25 5.09 -3.83 -0.02 1.23 16 13 C 0.08 1.32 3.46 -25.96 -0.09 1.23 16 14 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 15 C -0.15 -1.95 6.63 -25.16 -0.17 -2.11 16 16 C -0.15 -1.75 7.09 -25.16 -0.18 -1.92 16 17 C 0.04 0.52 7.63 37.93 0.29 0.81 16 18 O -0.35 -6.43 11.34 -35.23 -0.40 -6.83 16 19 C -0.17 -3.74 5.56 -90.62 -0.50 -4.25 16 20 C -0.17 -3.58 9.68 -26.69 -0.26 -3.84 16 21 C -0.18 -3.71 10.12 -26.69 -0.27 -3.98 16 22 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.32 6.64 8.48 -39.29 -0.33 6.31 16 24 H 0.07 1.60 8.06 -51.93 -0.42 1.18 16 25 H 0.03 0.45 7.69 -51.93 -0.40 0.05 16 26 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.32 7.79 -51.93 -0.40 0.91 16 33 H 0.11 2.51 6.21 -51.93 -0.32 2.18 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.10 2.31 8.14 -51.93 -0.42 1.89 16 LS Contribution 292.59 15.07 4.41 4.41 Total: -1.00 -29.73 292.59 -8.64 -38.38 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.96 Total: 7.53 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -1.70 Total: -19.06 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.03 Total: -41.10 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.40 Total: -6.83 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.73 -8.64 -38.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137217.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.396 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds