Wall clock time and date at job start Mon Mar 30 2020 03:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00039 * 2 1 4 4 H 1.48501 * 109.46889 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47192 * 299.99639 * 3 2 1 6 6 H 1.48504 * 109.47325 * 60.00032 * 3 2 1 7 7 C 1.37876 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00001 * 185.19163 * 7 2 1 9 9 C 1.50704 * 119.99919 * 5.18495 * 7 2 1 10 10 H 1.08996 * 109.46871 * 354.92298 * 9 7 2 11 11 N 1.46906 * 109.46952 * 234.92392 * 9 7 2 12 12 C 1.46903 * 110.99629 * 154.99886 * 11 9 7 13 13 C 1.52994 * 109.47051 * 179.97438 * 12 11 9 14 14 H 1.08999 * 110.33627 * 307.25345 * 13 12 11 15 15 C 1.54474 * 110.37586 * 185.00275 * 13 12 11 16 16 C 1.54511 * 104.06591 * 217.19231 * 15 13 12 17 17 C 1.54479 * 104.06189 * 359.97438 * 16 15 13 18 18 O 1.44424 * 104.80307 * 23.98085 * 17 16 15 19 19 C 1.52995 * 109.46999 * 114.92762 * 9 7 2 20 20 C 1.53004 * 117.49885 * 3.39873 * 19 9 7 21 21 C 1.52997 * 117.49722 * 294.74014 * 19 9 7 22 22 H 0.97003 * 119.99483 * 359.97438 * 1 2 3 23 23 H 1.00894 * 111.00056 * 278.95553 * 11 9 7 24 24 H 1.09000 * 109.47511 * 300.00476 * 12 11 9 25 25 H 1.09004 * 109.46772 * 60.00307 * 12 11 9 26 26 H 1.09004 * 110.51136 * 335.83868 * 15 13 12 27 27 H 1.09000 * 110.51365 * 98.40674 * 15 13 12 28 28 H 1.09001 * 110.50985 * 118.64301 * 16 15 13 29 29 H 1.09002 * 110.51103 * 241.21646 * 16 15 13 30 30 H 1.08998 * 110.36800 * 142.80999 * 17 16 15 31 31 H 1.08994 * 110.37142 * 265.14583 * 17 16 15 32 32 H 1.09001 * 115.55248 * 149.06614 * 19 9 7 33 33 H 1.09001 * 117.49900 * 359.97438 * 20 19 9 34 34 H 1.08997 * 117.49912 * 145.02260 * 20 19 9 35 35 H 1.09003 * 117.50024 * 214.98034 * 21 19 9 36 36 H 1.08996 * 117.50340 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0812 -1.1960 0.0852 9 6 1.2555 -2.4965 -0.1168 10 1 0.1832 -2.3017 -0.1010 11 7 1.6114 -3.3692 1.0101 12 6 0.5412 -4.3375 1.2843 13 6 0.9475 -5.2270 2.4609 14 1 1.9280 -5.6681 2.2815 15 6 -0.1064 -6.3334 2.6878 16 6 -0.1717 -6.4804 4.2245 17 6 0.8510 -5.4459 4.7443 18 8 0.9540 -4.4661 3.6883 19 6 1.6299 -3.1834 -1.4317 20 6 2.6945 -2.5117 -2.3015 21 6 1.2259 -2.4867 -2.7326 22 1 -0.4849 0.8401 0.0004 23 1 2.4887 -3.8380 0.8414 24 1 -0.3768 -3.8043 1.5314 25 1 0.3759 -4.9559 0.4020 26 1 -1.0744 -6.0258 2.2921 27 1 0.2145 -7.2671 2.2260 28 1 -1.1719 -6.2454 4.5885 29 1 0.1158 -7.4882 4.5243 30 1 0.4872 -4.9799 5.6601 31 1 1.8168 -5.9208 4.9169 32 1 1.6068 -4.2730 -1.4161 33 1 3.1278 -1.5803 -1.9371 34 1 3.3715 -3.1594 -2.8584 35 1 0.9374 -3.1180 -3.5730 36 1 0.6931 -1.5393 -2.6517 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137217.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:32 Heat of formation + Delta-G solvation = -43.923025 kcal Electronic energy + Delta-G solvation = -15869.391813 eV Core-core repulsion = 13353.229440 eV Total energy + Delta-G solvation = -2516.162373 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.30720 -38.85531 -35.58893 -34.35390 -32.92115 -31.00640 -28.24366 -25.73851 -24.28019 -23.02670 -22.57202 -21.81241 -20.98374 -18.39208 -17.26389 -16.81274 -16.59832 -16.43103 -16.22162 -15.45182 -14.97918 -14.56965 -14.42261 -13.76116 -13.56422 -13.09020 -12.87219 -12.80823 -12.54391 -12.36757 -12.11065 -12.04417 -11.82840 -11.66947 -11.46043 -11.30334 -10.91361 -10.60976 -10.60670 -10.36872 -8.78317 -8.05251 -6.12410 1.39609 1.42225 1.52959 2.44672 3.06576 3.14834 3.25770 3.66577 3.79108 4.05644 4.07611 4.23444 4.25015 4.44275 4.44684 4.51244 4.59058 4.67446 4.74689 4.87694 4.90740 4.94595 4.96964 5.00231 5.18434 5.25723 5.30285 5.45440 5.50028 5.66836 5.76632 6.10854 6.27767 6.82511 6.96297 7.08829 7.51316 9.01444 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.007408 C = 0.006366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.006105 B = 3778.942598 C = 4397.352821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.014 3.986 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.287 1.287 7 C -0.484 4.484 8 H 0.049 0.951 9 C 0.225 3.775 10 H 0.036 0.964 11 N -0.685 5.685 12 C 0.070 3.930 13 C 0.081 3.919 14 H 0.071 0.929 15 C -0.147 4.147 16 C -0.146 4.146 17 C 0.030 3.970 18 O -0.394 6.394 19 C -0.179 4.179 20 C -0.161 4.161 21 C -0.174 4.174 22 H 0.258 0.742 23 H 0.325 0.675 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.364 -13.600 3.143 14.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.184 4.184 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.214 1.214 7 C -0.523 4.523 8 H 0.067 0.933 9 C 0.117 3.883 10 H 0.054 0.946 11 N -0.315 5.315 12 C -0.060 4.060 13 C 0.023 3.977 14 H 0.089 0.911 15 C -0.186 4.186 16 C -0.184 4.184 17 C -0.047 4.047 18 O -0.314 6.314 19 C -0.200 4.200 20 C -0.197 4.197 21 C -0.212 4.212 22 H 0.067 0.933 23 H 0.143 0.857 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.012 -12.795 3.657 13.346 hybrid contribution 0.165 0.463 -0.699 0.854 sum 1.177 -12.333 2.959 12.737 Atomic orbital electron populations 1.70043 1.07275 1.26851 1.52731 1.25664 0.95523 1.02296 0.94922 0.85659 0.79367 0.80256 0.77286 1.18874 1.20520 1.21381 1.21136 0.92801 0.90991 1.47397 0.93315 1.18876 0.96510 0.89779 0.83096 0.94614 1.60920 1.03936 1.21862 1.44732 1.21945 0.95417 0.93326 0.95267 1.23080 0.98628 0.90832 0.85185 0.91081 1.22982 0.99374 0.98924 0.97284 1.22914 1.00329 1.00654 0.94467 1.23630 0.99110 0.90175 0.91757 1.89310 1.95041 1.31185 1.15871 1.23298 1.05248 0.96822 0.94592 1.22909 0.91160 1.02947 1.02727 1.22627 0.98935 1.01778 0.97862 0.93300 0.85735 0.94078 0.93970 0.91254 0.88331 0.90592 0.88105 0.88898 0.91431 0.89158 0.89533 0.88259 0.88161 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.22 12.62 21.45 0.27 -55.95 16 2 C 0.01 0.81 5.45 84.65 0.46 1.27 16 3 Si 0.95 45.40 29.54 68.60 2.03 47.43 16 4 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 7 C -0.48 -26.98 6.48 25.60 0.17 -26.81 16 8 H 0.05 2.72 7.42 -2.91 -0.02 2.70 16 9 C 0.23 11.46 2.67 44.17 0.12 11.58 16 10 H 0.04 2.12 6.58 -2.39 -0.02 2.11 16 11 N -0.69 -31.29 6.23 -495.44 -3.09 -34.38 16 12 C 0.07 2.73 5.09 86.30 0.44 3.17 16 13 C 0.08 2.55 3.46 31.09 0.11 2.65 16 14 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 15 C -0.15 -3.42 6.63 31.61 0.21 -3.21 16 16 C -0.15 -2.89 7.09 31.61 0.22 -2.66 16 17 C 0.03 0.74 7.63 72.49 0.55 1.30 16 18 O -0.39 -14.55 11.34 -148.98 -1.69 -16.24 16 19 C -0.18 -7.62 5.56 -10.79 -0.06 -7.68 16 20 C -0.16 -6.37 9.68 30.62 0.30 -6.08 16 21 C -0.17 -7.17 10.12 30.62 0.31 -6.86 16 22 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 23 H 0.33 13.54 8.48 -89.70 -0.76 12.78 16 24 H 0.04 1.84 8.06 -2.39 -0.02 1.83 16 25 H 0.04 1.48 7.69 -2.38 -0.02 1.46 16 26 H 0.07 1.70 7.87 -2.38 -0.02 1.68 16 27 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 3.39 7.79 -2.39 -0.02 3.37 16 33 H 0.09 3.87 6.21 -2.39 -0.01 3.86 16 34 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 36 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -66.31 292.59 0.63 -65.67 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.29 Total: 26.80 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: 2.83 Total: -33.33 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -2.82 Total: -90.33 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -1.69 Total: -16.24 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -66.31 0.63 -65.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137217.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.750 kcal (2) G-P(sol) polarization free energy of solvation -66.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds