Wall clock time and date at job start Mon Mar 30 2020 03:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00585 * 2 1 4 4 H 1.48498 * 109.47294 * 275.33311 * 3 2 1 5 5 H 1.48499 * 109.47049 * 35.32947 * 3 2 1 6 6 H 1.48503 * 109.47261 * 155.33247 * 3 2 1 7 7 C 1.38818 * 119.99364 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00529 * 336.41293 * 7 2 1 9 9 N 1.36940 * 119.99675 * 156.41779 * 7 2 1 10 10 C 1.46497 * 120.00199 * 321.15865 * 9 7 2 11 11 C 1.53007 * 109.47314 * 270.00431 * 10 9 7 12 12 H 1.08997 * 110.34984 * 57.85369 * 11 10 9 13 13 C 1.54943 * 110.30839 * 179.97438 * 11 10 9 14 14 C 1.55307 * 100.97602 * 155.33570 * 13 11 10 15 15 C 1.54431 * 102.23089 * 325.92073 * 14 13 11 16 16 O 1.43240 * 107.60637 * 21.29556 * 15 14 13 17 17 C 1.46501 * 119.99974 * 141.16035 * 9 7 2 18 18 C 1.53784 * 113.61387 * 42.99277 * 17 9 7 19 19 C 1.53779 * 87.07810 * 220.01668 * 18 17 9 20 20 C 1.53776 * 87.08346 * 25.43165 * 19 18 17 21 21 H 0.97000 * 119.99564 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47212 * 150.00248 * 10 9 7 23 23 H 1.09001 * 109.47204 * 30.00151 * 10 9 7 24 24 H 1.08996 * 111.12605 * 273.27456 * 13 11 10 25 25 H 1.09002 * 111.12795 * 37.40448 * 13 11 10 26 26 H 1.09001 * 110.84814 * 84.08086 * 14 13 11 27 27 H 1.09007 * 110.84766 * 207.69446 * 14 13 11 28 28 H 1.08998 * 109.78931 * 261.79245 * 15 14 13 29 29 H 1.09000 * 109.92767 * 140.87553 * 15 14 13 30 30 H 1.08998 * 112.84833 * 174.29351 * 17 9 7 31 31 H 1.08999 * 113.61476 * 334.56355 * 18 17 9 32 32 H 1.09000 * 113.61321 * 105.46770 * 18 17 9 33 33 H 1.08998 * 113.61923 * 270.87839 * 19 18 17 34 34 H 1.09004 * 113.61295 * 139.98136 * 19 18 17 35 35 H 1.08999 * 113.61893 * 220.01397 * 20 19 18 36 36 H 1.08998 * 113.61313 * 89.11381 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3852 2.1114 -1.3940 5 1 1.5087 2.6175 0.8096 6 1 3.5997 1.4100 0.5843 7 6 2.0101 -1.2023 -0.0005 8 1 1.5378 -2.0987 0.3733 9 7 3.2938 -1.2516 -0.4750 10 6 3.6690 -0.4692 -1.6553 11 6 3.4429 -1.3070 -2.9156 12 1 2.4022 -1.6249 -2.9778 13 6 3.8336 -0.4967 -4.1772 14 6 4.1552 -1.6416 -5.1761 15 6 4.7589 -2.7218 -4.2522 16 8 4.3146 -2.4487 -2.9182 17 6 4.2917 -2.0869 0.1977 18 6 3.7636 -3.4740 0.6004 19 6 4.5562 -3.3092 1.9079 20 6 4.4313 -1.7906 1.7002 21 1 -0.4849 0.8401 0.0004 22 1 4.7208 -0.1913 -1.5877 23 1 3.0575 0.4318 -1.7035 24 1 2.9986 0.1089 -4.5293 25 1 4.7125 0.1206 -3.9911 26 1 3.2462 -2.0052 -5.6552 27 1 4.8827 -1.3150 -5.9193 28 1 5.8472 -2.6784 -4.2957 29 1 4.4158 -3.7091 -4.5614 30 1 5.2441 -2.1177 -0.3316 31 1 2.6838 -3.5048 0.7454 32 1 4.1299 -4.2816 -0.0334 33 1 5.5809 -3.6755 1.8466 34 1 4.0271 -3.6744 2.7882 35 1 5.3366 -1.2392 1.9543 36 1 3.5340 -1.3613 2.1457 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261157140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:36 Heat of formation + Delta-G solvation = -4.731873 kcal Electronic energy + Delta-G solvation = -16613.184044 eV Core-core repulsion = 14098.721126 eV Total energy + Delta-G solvation = -2514.462918 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.99233 -37.89757 -34.24257 -31.71868 -31.46126 -29.23645 -25.16279 -24.87589 -24.59449 -21.79933 -21.11109 -20.44632 -18.57706 -16.58818 -16.15301 -15.43350 -15.22632 -14.90404 -14.22717 -14.03013 -13.07412 -12.87853 -12.67129 -12.38806 -12.11269 -11.58383 -11.42708 -11.33171 -11.10844 -10.87595 -10.84241 -10.49989 -10.43728 -10.06630 -9.76595 -9.74430 -9.50804 -9.15333 -8.92294 -8.43538 -6.65287 -5.96918 -3.35530 3.30045 3.47832 3.55688 4.33808 4.55090 4.83794 4.98587 5.12810 5.30682 5.35839 5.56702 5.62655 5.67115 5.68827 5.84088 5.93045 5.99028 6.05766 6.08236 6.12751 6.26795 6.36397 6.42813 6.45411 6.59412 6.67713 6.78929 6.87205 6.98046 7.18087 7.39880 7.66708 8.13528 8.48451 9.09045 9.77825 10.22890 11.18930 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.019572 B = 0.013461 C = 0.009265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.275905 B = 2079.623100 C = 3021.477643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.035 3.965 3 Si 0.867 3.133 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.258 4.258 8 H 0.081 0.919 9 N -0.586 5.586 10 C 0.140 3.860 11 C 0.067 3.933 12 H 0.076 0.924 13 C -0.156 4.156 14 C -0.154 4.154 15 C 0.050 3.950 16 O -0.368 6.368 17 C 0.166 3.834 18 C -0.146 4.146 19 C -0.145 4.145 20 C -0.157 4.157 21 H 0.262 0.738 22 H 0.043 0.957 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.490 -2.619 -6.237 11.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.165 4.165 3 Si 0.697 3.303 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.191 1.191 7 C -0.386 4.386 8 H 0.098 0.902 9 N -0.305 5.305 10 C 0.014 3.986 11 C 0.007 3.993 12 H 0.094 0.906 13 C -0.194 4.194 14 C -0.192 4.192 15 C -0.027 4.027 16 O -0.287 6.287 17 C 0.058 3.942 18 C -0.185 4.185 19 C -0.183 4.183 20 C -0.197 4.197 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.374 -2.629 -6.035 11.455 hybrid contribution 0.294 1.131 -0.301 1.206 sum 9.668 -1.498 -6.336 11.656 Atomic orbital electron populations 1.69893 1.05977 1.26572 1.51623 1.25501 0.95012 0.97514 0.98440 0.87051 0.81142 0.85149 0.76982 1.21520 1.22933 1.19098 1.18706 0.87027 0.94256 1.38645 0.90165 1.44040 1.08026 1.51983 1.26407 1.21383 0.97901 0.93515 0.85800 1.23848 0.94419 0.85635 0.95393 0.90637 1.23333 1.02027 0.98080 0.95990 1.23087 1.01287 0.96390 0.98426 1.23018 0.98234 0.97667 0.83788 1.88487 1.66021 1.49128 1.25076 1.21758 0.91626 0.90604 0.90172 1.23328 1.01040 0.98629 0.95513 1.22666 0.99266 0.97964 0.98400 1.23521 1.01039 0.94618 1.00534 0.92826 0.93893 0.91740 0.90353 0.90931 0.90924 0.90859 0.92395 0.92408 0.90702 0.89465 0.93267 0.91717 0.92559 0.93748 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.97 55.49 0.78 -26.34 16 2 C 0.04 1.01 5.27 -17.43 -0.09 0.91 16 3 Si 0.87 21.89 25.21 -169.99 -4.28 17.60 16 4 H -0.29 -6.97 6.66 56.52 0.38 -6.60 16 5 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.26 -7.07 8.54 -15.06 -0.13 -7.20 16 8 H 0.08 2.39 6.44 -52.49 -0.34 2.05 16 9 N -0.59 -14.03 2.26 -164.73 -0.37 -14.40 16 10 C 0.14 3.08 4.26 -4.04 -0.02 3.06 16 11 C 0.07 1.31 3.70 -25.70 -0.10 1.21 16 12 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 13 C -0.16 -2.41 6.57 -24.48 -0.16 -2.57 16 14 C -0.15 -2.00 7.02 -24.76 -0.17 -2.18 16 15 C 0.05 0.73 7.80 37.91 0.30 1.02 16 16 O -0.37 -7.04 10.64 -35.23 -0.37 -7.41 16 17 C 0.17 3.52 4.04 -67.12 -0.27 3.24 16 18 C -0.15 -2.90 7.58 -25.92 -0.20 -3.10 16 19 C -0.14 -2.52 8.08 -25.92 -0.21 -2.73 16 20 C -0.16 -3.14 7.65 -25.92 -0.20 -3.34 16 21 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 22 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 23 H 0.06 1.51 3.53 -51.93 -0.18 1.33 16 24 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.07 1.05 8.06 -51.93 -0.42 0.64 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.51 8.04 -51.93 -0.42 1.10 16 31 H 0.09 1.94 6.24 -51.93 -0.32 1.62 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.09 2.00 7.46 -51.93 -0.39 1.61 16 LS Contribution 281.00 15.07 4.23 4.23 Total: -1.00 -29.60 281.00 -7.14 -36.75 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.87 Total: 1.22 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -1.25 Total: -11.66 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.40 Total: -40.74 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.37 Total: -7.41 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.28 Total: 17.60 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.60 -7.14 -36.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.015 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds