Wall clock time and date at job start Mon Mar 30 2020 03:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00585 * 2 1 4 4 H 1.48498 * 109.47294 * 275.33311 * 3 2 1 5 5 H 1.48499 * 109.47049 * 35.32947 * 3 2 1 6 6 H 1.48503 * 109.47261 * 155.33247 * 3 2 1 7 7 C 1.38818 * 119.99364 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00529 * 336.41293 * 7 2 1 9 9 N 1.36940 * 119.99675 * 156.41779 * 7 2 1 10 10 C 1.46497 * 120.00199 * 321.15865 * 9 7 2 11 11 C 1.53007 * 109.47314 * 270.00431 * 10 9 7 12 12 H 1.08997 * 110.34984 * 57.85369 * 11 10 9 13 13 C 1.54943 * 110.30839 * 179.97438 * 11 10 9 14 14 C 1.55307 * 100.97602 * 155.33570 * 13 11 10 15 15 C 1.54431 * 102.23089 * 325.92073 * 14 13 11 16 16 O 1.43240 * 107.60637 * 21.29556 * 15 14 13 17 17 C 1.46501 * 119.99974 * 141.16035 * 9 7 2 18 18 C 1.53784 * 113.61387 * 42.99277 * 17 9 7 19 19 C 1.53779 * 87.07810 * 220.01668 * 18 17 9 20 20 C 1.53776 * 87.08346 * 25.43165 * 19 18 17 21 21 H 0.97000 * 119.99564 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47212 * 150.00248 * 10 9 7 23 23 H 1.09001 * 109.47204 * 30.00151 * 10 9 7 24 24 H 1.08996 * 111.12605 * 273.27456 * 13 11 10 25 25 H 1.09002 * 111.12795 * 37.40448 * 13 11 10 26 26 H 1.09001 * 110.84814 * 84.08086 * 14 13 11 27 27 H 1.09007 * 110.84766 * 207.69446 * 14 13 11 28 28 H 1.08998 * 109.78931 * 261.79245 * 15 14 13 29 29 H 1.09000 * 109.92767 * 140.87553 * 15 14 13 30 30 H 1.08998 * 112.84833 * 174.29351 * 17 9 7 31 31 H 1.08999 * 113.61476 * 334.56355 * 18 17 9 32 32 H 1.09000 * 113.61321 * 105.46770 * 18 17 9 33 33 H 1.08998 * 113.61923 * 270.87839 * 19 18 17 34 34 H 1.09004 * 113.61295 * 139.98136 * 19 18 17 35 35 H 1.08999 * 113.61893 * 220.01397 * 20 19 18 36 36 H 1.08998 * 113.61313 * 89.11381 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3852 2.1114 -1.3940 5 1 1.5087 2.6175 0.8096 6 1 3.5997 1.4100 0.5843 7 6 2.0101 -1.2023 -0.0005 8 1 1.5378 -2.0987 0.3733 9 7 3.2938 -1.2516 -0.4750 10 6 3.6690 -0.4692 -1.6553 11 6 3.4429 -1.3070 -2.9156 12 1 2.4022 -1.6249 -2.9778 13 6 3.8336 -0.4967 -4.1772 14 6 4.1552 -1.6416 -5.1761 15 6 4.7589 -2.7218 -4.2522 16 8 4.3146 -2.4487 -2.9182 17 6 4.2917 -2.0869 0.1977 18 6 3.7636 -3.4740 0.6004 19 6 4.5562 -3.3092 1.9079 20 6 4.4313 -1.7906 1.7002 21 1 -0.4849 0.8401 0.0004 22 1 4.7208 -0.1913 -1.5877 23 1 3.0575 0.4318 -1.7035 24 1 2.9986 0.1089 -4.5293 25 1 4.7125 0.1206 -3.9911 26 1 3.2462 -2.0052 -5.6552 27 1 4.8827 -1.3150 -5.9193 28 1 5.8472 -2.6784 -4.2957 29 1 4.4158 -3.7091 -4.5614 30 1 5.2441 -2.1177 -0.3316 31 1 2.6838 -3.5048 0.7454 32 1 4.1299 -4.2816 -0.0334 33 1 5.5809 -3.6755 1.8466 34 1 4.0271 -3.6744 2.7882 35 1 5.3366 -1.2392 1.9543 36 1 3.5340 -1.3613 2.1457 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261157140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:35 Heat of formation + Delta-G solvation = -23.258748 kcal Electronic energy + Delta-G solvation = -16613.987430 eV Core-core repulsion = 14098.721126 eV Total energy + Delta-G solvation = -2515.266303 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.43029 -39.48182 -36.05772 -33.56820 -32.92444 -30.77259 -26.98221 -26.49431 -26.21521 -23.35438 -22.35467 -22.07010 -20.30581 -18.34343 -17.79763 -17.02894 -16.81273 -16.56936 -15.78549 -15.53263 -14.69664 -14.59666 -14.32193 -13.98548 -13.73548 -13.25499 -13.12587 -12.70301 -12.57048 -12.50064 -12.37687 -12.12207 -11.81134 -11.72321 -11.63336 -11.45594 -11.10648 -10.84545 -10.56312 -10.32011 -8.60611 -8.16566 -5.51977 1.28056 1.41260 1.53404 2.43872 2.94826 3.12998 3.42764 3.68091 3.96811 4.05180 4.07100 4.10582 4.26231 4.30785 4.38462 4.49784 4.55509 4.76421 4.84265 4.86434 4.88137 4.94309 4.94539 5.05616 5.14107 5.15216 5.19760 5.29749 5.34527 5.55994 5.76149 6.04059 6.25692 6.32015 7.07444 7.71484 8.15539 9.03743 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.019572 B = 0.013461 C = 0.009265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.275905 B = 2079.623100 C = 3021.477643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.019 4.019 3 Si 0.931 3.069 4 H -0.270 1.270 5 H -0.310 1.310 6 H -0.259 1.259 7 C -0.239 4.239 8 H 0.041 0.959 9 N -0.598 5.598 10 C 0.135 3.865 11 C 0.070 3.930 12 H 0.035 0.965 13 C -0.152 4.152 14 C -0.143 4.143 15 C 0.040 3.960 16 O -0.391 6.391 17 C 0.156 3.844 18 C -0.148 4.148 19 C -0.122 4.122 20 C -0.159 4.159 21 H 0.261 0.739 22 H 0.064 0.936 23 H 0.048 0.952 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.571 -2.373 -7.412 14.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.215 4.215 3 Si 0.759 3.241 4 H -0.197 1.197 5 H -0.239 1.239 6 H -0.183 1.183 7 C -0.369 4.369 8 H 0.058 0.942 9 N -0.317 5.317 10 C 0.009 3.991 11 C 0.010 3.990 12 H 0.053 0.947 13 C -0.190 4.190 14 C -0.181 4.181 15 C -0.037 4.037 16 O -0.311 6.311 17 C 0.049 3.951 18 C -0.188 4.188 19 C -0.160 4.160 20 C -0.199 4.199 21 H 0.070 0.930 22 H 0.083 0.917 23 H 0.066 0.934 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.125 0.875 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.501 -2.397 -7.230 14.639 hybrid contribution -0.637 0.902 0.037 1.105 sum 11.864 -1.495 -7.193 13.955 Atomic orbital electron populations 1.70016 1.07634 1.27213 1.54487 1.26038 0.95532 1.00750 0.99196 0.86012 0.79669 0.80761 0.77631 1.19661 1.23871 1.18349 1.18487 0.88431 0.92839 1.37143 0.94181 1.44157 1.07281 1.52645 1.27652 1.21461 0.98543 0.93074 0.85999 1.23501 0.92684 0.86391 0.96425 0.94701 1.23310 1.02749 0.98575 0.94345 1.23076 1.02252 0.94589 0.98143 1.23311 0.99623 0.98607 0.82130 1.88439 1.65699 1.48911 1.28095 1.22038 0.91650 0.90542 0.90852 1.23213 0.99306 0.98557 0.97676 1.22616 1.00658 0.95680 0.97008 1.23420 1.00416 0.96731 0.99301 0.92980 0.91745 0.93433 0.90051 0.89309 0.90714 0.87498 0.90158 0.91672 0.88875 0.93028 0.92174 0.88298 0.91795 0.91643 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.68 13.97 21.65 0.30 -59.37 16 2 C -0.02 -1.13 5.27 84.86 0.45 -0.68 16 3 Si 0.93 45.99 25.21 68.60 1.73 47.72 16 4 H -0.27 -12.44 6.66 99.48 0.66 -11.78 16 5 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 6 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.24 -13.64 8.54 84.03 0.72 -12.92 16 8 H 0.04 2.58 6.44 -2.91 -0.02 2.56 16 9 N -0.60 -28.76 2.26 -675.10 -1.52 -30.28 16 10 C 0.13 5.77 4.26 86.38 0.37 6.14 16 11 C 0.07 2.69 3.70 31.26 0.12 2.80 16 12 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 13 C -0.15 -4.29 6.57 32.05 0.21 -4.08 16 14 C -0.14 -3.22 7.02 31.87 0.22 -3.00 16 15 C 0.04 1.03 7.80 72.47 0.56 1.60 16 16 O -0.39 -14.37 10.64 -148.98 -1.59 -15.95 16 17 C 0.16 6.42 4.04 45.52 0.18 6.61 16 18 C -0.15 -5.85 7.58 31.12 0.24 -5.62 16 19 C -0.12 -3.96 8.08 31.12 0.25 -3.71 16 20 C -0.16 -6.13 7.65 31.12 0.24 -5.89 16 21 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 22 H 0.06 2.46 8.04 -2.39 -0.02 2.44 16 23 H 0.05 2.19 3.53 -2.39 -0.01 2.18 16 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.09 2.24 8.06 -2.39 -0.02 2.22 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 3.51 8.04 -2.39 -0.02 3.49 16 31 H 0.05 2.40 6.24 -2.39 -0.01 2.38 16 32 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 2.49 7.46 -2.39 -0.02 2.47 16 Total: -1.00 -66.48 281.00 3.47 -63.01 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.99 Total: 13.63 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 3.56 Total: -18.75 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -1.22 Total: -89.65 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -1.59 Total: -15.95 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.73 Total: 47.72 kcal Total: -66.48 3.47 -63.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.752 kcal (2) G-P(sol) polarization free energy of solvation -66.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds