Wall clock time and date at job start Mon Mar 30 2020 03:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00150 * 2 1 4 4 H 1.48500 * 109.46696 * 239.99782 * 3 2 1 5 5 H 1.48498 * 109.46947 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47375 * 119.99883 * 3 2 1 7 7 C 1.38809 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00109 * 158.72590 * 7 2 1 9 9 N 1.36932 * 120.00385 * 338.72889 * 7 2 1 10 10 C 1.46497 * 120.00103 * 324.92558 * 9 7 2 11 11 C 1.53000 * 109.47046 * 270.00021 * 10 9 7 12 12 H 1.09004 * 109.82385 * 305.69524 * 11 10 9 13 13 C 1.54385 * 109.90811 * 184.76422 * 11 10 9 14 14 C 1.55299 * 102.25273 * 219.08572 * 13 11 10 15 15 C 1.54947 * 100.94339 * 34.13131 * 14 13 11 16 16 O 1.43238 * 109.83423 * 66.58466 * 11 10 9 17 17 C 1.46500 * 120.00277 * 144.91955 * 9 7 2 18 18 C 1.53784 * 113.61411 * 43.01553 * 17 9 7 19 19 C 1.53777 * 87.08184 * 220.01830 * 18 17 9 20 20 C 1.53777 * 87.08226 * 25.43049 * 19 18 17 21 21 H 0.97007 * 119.99593 * 355.56615 * 1 2 3 22 22 H 1.08995 * 109.47653 * 149.99600 * 10 9 7 23 23 H 1.09000 * 109.47310 * 29.99707 * 10 9 7 24 24 H 1.09000 * 110.84625 * 337.27687 * 13 11 10 25 25 H 1.09005 * 110.84728 * 100.89348 * 13 11 10 26 26 H 1.09005 * 111.12638 * 276.21170 * 14 13 11 27 27 H 1.08996 * 111.16404 * 152.06726 * 14 13 11 28 28 H 1.09000 * 110.30858 * 204.63943 * 15 14 13 29 29 H 1.08997 * 110.30931 * 82.47114 * 15 14 13 30 30 H 1.09003 * 112.84940 * 174.31762 * 17 9 7 31 31 H 1.09001 * 113.60917 * 334.56659 * 18 17 9 32 32 H 1.08995 * 113.61485 * 105.46485 * 18 17 9 33 33 H 1.08995 * 113.61694 * 270.88413 * 19 18 17 34 34 H 1.09004 * 113.61441 * 139.98086 * 19 18 17 35 35 H 1.08999 * 113.61453 * 220.01892 * 20 19 18 36 36 H 1.08999 * 113.61819 * 89.11775 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0350 -1.2342 -0.3388 9 7 1.3955 -2.3475 0.4312 10 6 0.4272 -2.2907 1.5291 11 6 1.1544 -2.4849 2.8611 12 1 1.7363 -3.4063 2.8337 13 6 0.1306 -2.5464 4.0150 14 6 0.8517 -1.7525 5.1381 15 6 1.6110 -0.6890 4.3056 16 8 2.0198 -1.3708 3.1093 17 6 1.7061 -3.6296 -0.2059 18 6 3.2062 -3.8370 -0.4738 19 6 2.7993 -4.4631 -1.8181 20 6 1.5150 -3.6216 -1.7317 21 1 -0.4850 0.8376 0.0649 22 1 -0.3138 -3.0797 1.4012 23 1 -0.0704 -1.3209 1.5249 24 1 -0.8021 -2.0583 3.7324 25 1 -0.0472 -3.5773 4.3213 26 1 1.5449 -2.3901 5.6870 27 1 0.1342 -1.2849 5.8123 28 1 2.4825 -0.3309 4.8537 29 1 0.9498 0.1421 4.0602 30 1 1.2288 -4.4751 0.2896 31 1 3.7640 -2.9062 -0.5767 32 1 3.6787 -4.5413 0.2108 33 1 2.6219 -5.5371 -1.7636 34 1 3.4506 -4.1820 -2.6457 35 1 0.6223 -4.1522 -2.0627 36 1 1.6105 -2.6320 -2.1785 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261157141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:37 Heat of formation + Delta-G solvation = -6.347553 kcal Electronic energy + Delta-G solvation = -16661.408301 eV Core-core repulsion = 14146.875322 eV Total energy + Delta-G solvation = -2514.532979 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.72267 -37.79002 -33.98158 -31.45948 -30.90420 -28.88933 -25.16831 -24.54805 -24.48383 -21.81754 -20.95221 -19.85806 -18.70425 -16.30999 -15.82969 -15.36567 -15.18721 -14.46427 -13.93122 -13.51889 -13.16468 -12.77580 -12.48382 -12.10222 -11.69276 -11.41919 -11.12481 -11.00314 -10.85655 -10.70971 -10.64866 -10.43683 -10.26521 -10.09320 -9.83971 -9.56782 -9.47556 -9.13814 -8.58448 -8.27326 -6.42406 -5.57762 -3.16259 3.49170 3.53570 3.60653 4.58384 4.69963 5.03887 5.27384 5.40836 5.51113 5.58276 5.64531 5.71246 5.81264 5.86241 5.95518 6.09148 6.16233 6.19994 6.27354 6.35880 6.40174 6.46594 6.60989 6.67154 6.74102 6.80130 6.93378 7.01213 7.23294 7.45737 7.82165 7.96806 8.05137 8.67707 9.35951 10.00751 10.54364 11.39081 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.013620 C = 0.009277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.980265 B = 2055.314265 C = 3017.507060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.013 3.987 3 Si 0.890 3.110 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.059 0.941 9 N -0.564 5.564 10 C 0.129 3.871 11 C 0.066 3.934 12 H 0.056 0.944 13 C -0.151 4.151 14 C -0.156 4.156 15 C 0.049 3.951 16 O -0.348 6.348 17 C 0.154 3.846 18 C -0.153 4.153 19 C -0.147 4.147 20 C -0.150 4.150 21 H 0.250 0.750 22 H 0.029 0.971 23 H 0.107 0.893 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.043 0.957 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.854 -5.720 5.984 8.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.186 4.186 3 Si 0.720 3.280 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.355 4.355 8 H 0.077 0.923 9 N -0.280 5.280 10 C 0.002 3.998 11 C 0.006 3.994 12 H 0.074 0.926 13 C -0.189 4.189 14 C -0.194 4.194 15 C -0.029 4.029 16 O -0.266 6.266 17 C 0.045 3.955 18 C -0.192 4.192 19 C -0.185 4.185 20 C -0.190 4.190 21 H 0.060 0.940 22 H 0.048 0.952 23 H 0.124 0.876 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.892 -5.504 5.781 8.031 hybrid contribution 0.261 0.799 0.287 0.889 sum 1.152 -4.704 6.068 7.764 Atomic orbital electron populations 1.70008 1.05442 1.25526 1.52904 1.24907 0.94792 0.98210 1.00658 0.86564 0.79311 0.83924 0.78161 1.21146 1.22033 1.20843 1.18786 0.93517 0.85486 1.37760 0.92336 1.43716 1.48108 1.02295 1.33894 1.21455 0.90740 1.03394 0.84212 1.23638 0.90396 0.88926 0.96486 0.92634 1.23165 1.00024 1.00236 0.95489 1.23229 0.99568 0.98440 0.98125 1.23246 0.97947 0.95103 0.86567 1.88637 1.52945 1.43346 1.41689 1.21818 0.93235 0.89084 0.91328 1.23421 1.00085 1.00136 0.95582 1.22693 0.99337 0.98250 0.98188 1.23465 0.95042 0.99908 1.00582 0.94037 0.95241 0.87602 0.90651 0.91306 0.91287 0.91010 0.91225 0.93056 0.91523 0.89609 0.93669 0.91810 0.92745 0.93802 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 11.28 55.49 0.63 -25.27 16 2 C 0.01 0.35 4.98 -17.43 -0.09 0.27 16 3 Si 0.89 22.47 29.61 -169.99 -5.03 17.44 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.23 -6.19 7.75 -15.06 -0.12 -6.30 16 8 H 0.06 1.63 6.24 -52.48 -0.33 1.31 16 9 N -0.56 -14.04 2.68 -164.74 -0.44 -14.48 16 10 C 0.13 3.02 4.87 -4.04 -0.02 3.00 16 11 C 0.07 1.34 3.77 -26.01 -0.10 1.24 16 12 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.15 -2.44 6.55 -24.79 -0.16 -2.61 16 14 C -0.16 -2.29 7.16 -24.48 -0.18 -2.46 16 15 C 0.05 0.88 7.78 38.19 0.30 1.18 16 16 O -0.35 -7.88 10.58 -35.23 -0.37 -8.26 16 17 C 0.15 3.31 4.40 -67.12 -0.30 3.01 16 18 C -0.15 -3.00 7.58 -25.92 -0.20 -3.20 16 19 C -0.15 -2.56 8.08 -25.92 -0.21 -2.77 16 20 C -0.15 -3.08 7.65 -25.92 -0.20 -3.28 16 21 H 0.25 7.06 8.32 -40.82 -0.34 6.72 16 22 H 0.03 0.65 8.04 -51.93 -0.42 0.23 16 23 H 0.11 2.84 5.32 -51.93 -0.28 2.56 16 24 H 0.07 1.24 7.85 -51.93 -0.41 0.83 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.33 8.04 -51.93 -0.42 0.91 16 31 H 0.09 1.86 6.22 -51.93 -0.32 1.54 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 2.08 7.46 -51.93 -0.39 1.70 16 LS Contribution 284.95 15.07 4.29 4.29 Total: -1.00 -29.51 284.95 -8.11 -37.62 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.92 Total: 0.58 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.26 Total: -11.92 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.18 Total: -39.75 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.37 Total: -8.26 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.51 -8.11 -37.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.271 kcal (2) G-P(sol) polarization free energy of solvation -29.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds