Wall clock time and date at job start Mon Mar 30 2020 03:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00150 * 2 1 4 4 H 1.48500 * 109.46696 * 239.99782 * 3 2 1 5 5 H 1.48498 * 109.46947 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47375 * 119.99883 * 3 2 1 7 7 C 1.38809 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00109 * 158.72590 * 7 2 1 9 9 N 1.36932 * 120.00385 * 338.72889 * 7 2 1 10 10 C 1.46497 * 120.00103 * 324.92558 * 9 7 2 11 11 C 1.53000 * 109.47046 * 270.00021 * 10 9 7 12 12 H 1.09004 * 109.82385 * 305.69524 * 11 10 9 13 13 C 1.54385 * 109.90811 * 184.76422 * 11 10 9 14 14 C 1.55299 * 102.25273 * 219.08572 * 13 11 10 15 15 C 1.54947 * 100.94339 * 34.13131 * 14 13 11 16 16 O 1.43238 * 109.83423 * 66.58466 * 11 10 9 17 17 C 1.46500 * 120.00277 * 144.91955 * 9 7 2 18 18 C 1.53784 * 113.61411 * 43.01553 * 17 9 7 19 19 C 1.53777 * 87.08184 * 220.01830 * 18 17 9 20 20 C 1.53777 * 87.08226 * 25.43049 * 19 18 17 21 21 H 0.97007 * 119.99593 * 355.56615 * 1 2 3 22 22 H 1.08995 * 109.47653 * 149.99600 * 10 9 7 23 23 H 1.09000 * 109.47310 * 29.99707 * 10 9 7 24 24 H 1.09000 * 110.84625 * 337.27687 * 13 11 10 25 25 H 1.09005 * 110.84728 * 100.89348 * 13 11 10 26 26 H 1.09005 * 111.12638 * 276.21170 * 14 13 11 27 27 H 1.08996 * 111.16404 * 152.06726 * 14 13 11 28 28 H 1.09000 * 110.30858 * 204.63943 * 15 14 13 29 29 H 1.08997 * 110.30931 * 82.47114 * 15 14 13 30 30 H 1.09003 * 112.84940 * 174.31762 * 17 9 7 31 31 H 1.09001 * 113.60917 * 334.56659 * 18 17 9 32 32 H 1.08995 * 113.61485 * 105.46485 * 18 17 9 33 33 H 1.08995 * 113.61694 * 270.88413 * 19 18 17 34 34 H 1.09004 * 113.61441 * 139.98086 * 19 18 17 35 35 H 1.08999 * 113.61453 * 220.01892 * 20 19 18 36 36 H 1.08999 * 113.61819 * 89.11775 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0350 -1.2342 -0.3388 9 7 1.3955 -2.3475 0.4312 10 6 0.4272 -2.2907 1.5291 11 6 1.1544 -2.4849 2.8611 12 1 1.7363 -3.4063 2.8337 13 6 0.1306 -2.5464 4.0150 14 6 0.8517 -1.7525 5.1381 15 6 1.6110 -0.6890 4.3056 16 8 2.0198 -1.3708 3.1093 17 6 1.7061 -3.6296 -0.2059 18 6 3.2062 -3.8370 -0.4738 19 6 2.7993 -4.4631 -1.8181 20 6 1.5150 -3.6216 -1.7317 21 1 -0.4850 0.8376 0.0649 22 1 -0.3138 -3.0797 1.4012 23 1 -0.0704 -1.3209 1.5249 24 1 -0.8021 -2.0583 3.7324 25 1 -0.0472 -3.5773 4.3213 26 1 1.5449 -2.3901 5.6870 27 1 0.1342 -1.2849 5.8123 28 1 2.4825 -0.3309 4.8537 29 1 0.9498 0.1421 4.0602 30 1 1.2288 -4.4751 0.2896 31 1 3.7640 -2.9062 -0.5767 32 1 3.6787 -4.5413 0.2108 33 1 2.6219 -5.5371 -1.7636 34 1 3.4506 -4.1820 -2.6457 35 1 0.6223 -4.1522 -2.0627 36 1 1.6105 -2.6320 -2.1785 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261157141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:37 Heat of formation + Delta-G solvation = -23.685596 kcal Electronic energy + Delta-G solvation = -16662.160135 eV Core-core repulsion = 14146.875322 eV Total energy + Delta-G solvation = -2515.284813 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.29002 -39.40675 -35.85554 -33.07081 -32.69537 -30.53625 -27.05944 -26.19509 -26.11581 -23.45943 -22.31816 -21.53865 -20.42409 -18.05924 -17.56008 -17.10751 -16.68313 -16.22226 -15.81861 -15.13672 -14.86932 -14.14374 -14.14236 -13.75985 -13.38442 -13.11115 -12.97700 -12.70666 -12.45291 -12.39690 -12.29766 -12.05365 -11.92988 -11.68366 -11.54687 -11.32731 -11.10324 -10.79731 -10.36087 -10.22584 -8.44598 -7.65906 -5.28009 1.43638 1.46690 1.54440 2.58602 3.19005 3.36587 3.71207 3.80922 4.04525 4.07416 4.12838 4.17018 4.32278 4.40401 4.48752 4.57991 4.83706 4.84790 4.91355 4.92228 4.95580 4.98666 5.09845 5.11949 5.17481 5.20089 5.31053 5.37695 5.60759 5.77746 5.82190 5.92640 6.47752 6.61745 7.30719 8.02676 8.49336 9.25029 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.013620 C = 0.009277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.980265 B = 2055.314265 C = 3017.507060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.033 4.033 3 Si 0.937 3.063 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.218 4.218 8 H 0.047 0.953 9 N -0.580 5.580 10 C 0.128 3.872 11 C 0.067 3.933 12 H 0.058 0.942 13 C -0.144 4.144 14 C -0.139 4.139 15 C 0.036 3.964 16 O -0.388 6.388 17 C 0.139 3.861 18 C -0.149 4.149 19 C -0.122 4.122 20 C -0.154 4.154 21 H 0.244 0.756 22 H 0.037 0.963 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.034 0.966 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.290 -7.466 7.115 10.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.229 4.229 3 Si 0.767 3.233 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.349 4.349 8 H 0.065 0.935 9 N -0.297 5.297 10 C 0.001 3.999 11 C 0.008 3.992 12 H 0.075 0.925 13 C -0.182 4.182 14 C -0.176 4.176 15 C -0.041 4.041 16 O -0.308 6.308 17 C 0.031 3.969 18 C -0.189 4.189 19 C -0.160 4.160 20 C -0.194 4.194 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.117 0.883 26 H 0.107 0.893 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.339 -7.266 6.912 10.118 hybrid contribution 0.139 1.293 -0.071 1.302 sum 1.479 -5.974 6.840 9.201 Atomic orbital electron populations 1.70122 1.06297 1.25446 1.54766 1.25405 0.95368 1.00349 1.01739 0.85814 0.78243 0.81418 0.77856 1.20634 1.22099 1.21383 1.18837 0.93028 0.86731 1.36308 0.93537 1.43926 1.48143 1.02786 1.34871 1.21404 0.90971 1.01730 0.85782 1.23485 0.91008 0.88393 0.96338 0.92451 1.23126 0.98462 1.02340 0.94313 1.23182 0.99779 0.97192 0.97481 1.23469 0.98973 0.95557 0.86072 1.88581 1.53958 1.44282 1.43972 1.22167 0.94780 0.88221 0.91710 1.23285 0.98417 0.99615 0.97566 1.22625 0.96870 0.99438 0.97028 1.23355 0.97492 0.98843 0.99738 0.94661 0.94436 0.91046 0.91391 0.88301 0.89302 0.88338 0.89550 0.94741 0.89493 0.92428 0.91654 0.88459 0.91756 0.92735 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.98 11.28 21.65 0.24 -54.73 16 2 C -0.03 -1.91 4.98 84.86 0.42 -1.49 16 3 Si 0.94 47.38 29.61 68.60 2.03 49.41 16 4 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 5 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 6 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 7 C -0.22 -12.26 7.75 84.03 0.65 -11.61 16 8 H 0.05 2.69 6.24 -2.91 -0.02 2.67 16 9 N -0.58 -29.17 2.68 -675.12 -1.81 -30.98 16 10 C 0.13 6.04 4.87 86.38 0.42 6.46 16 11 C 0.07 2.70 3.77 31.06 0.12 2.81 16 12 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 13 C -0.14 -4.34 6.55 31.85 0.21 -4.13 16 14 C -0.14 -3.65 7.16 32.05 0.23 -3.42 16 15 C 0.04 1.26 7.78 72.65 0.56 1.83 16 16 O -0.39 -17.60 10.58 -148.98 -1.58 -19.17 16 17 C 0.14 5.82 4.40 45.52 0.20 6.02 16 18 C -0.15 -5.64 7.58 31.12 0.24 -5.40 16 19 C -0.12 -3.93 8.08 31.12 0.25 -3.68 16 20 C -0.15 -6.22 7.65 31.12 0.24 -5.98 16 21 H 0.24 14.29 8.32 -92.70 -0.77 13.52 16 22 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 23 H 0.07 3.95 5.32 -2.39 -0.01 3.94 16 24 H 0.07 2.14 7.85 -2.39 -0.02 2.12 16 25 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 26 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 3.27 8.04 -2.39 -0.02 3.25 16 31 H 0.06 2.50 6.22 -2.39 -0.01 2.48 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.06 1.96 8.14 -2.38 -0.02 1.95 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 2.41 7.46 -2.39 -0.02 2.39 16 Total: -1.00 -65.31 284.95 3.46 -61.84 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 1.03 Total: 12.21 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 3.54 Total: -18.58 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -1.56 Total: -85.71 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -1.58 Total: -19.17 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -65.31 3.46 -61.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.158 kcal (2) G-P(sol) polarization free energy of solvation -65.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds