Wall clock time and date at job start Mon Mar 30 2020 03:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99922 * 2 1 4 4 H 1.48501 * 109.47240 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47418 * 300.00059 * 3 2 1 6 6 H 1.48497 * 109.47071 * 60.00220 * 3 2 1 7 7 C 1.37875 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00015 * 185.22944 * 7 2 1 9 9 C 1.50701 * 120.00060 * 5.22826 * 7 2 1 10 10 H 1.08997 * 109.47313 * 354.96270 * 9 7 2 11 11 C 1.52991 * 109.47204 * 234.95943 * 9 7 2 12 12 C 1.53004 * 117.49918 * 132.92024 * 11 9 7 13 13 C 1.52996 * 117.50165 * 64.25859 * 11 9 7 14 14 N 1.46901 * 109.47106 * 114.95691 * 9 7 2 15 15 C 1.48541 * 110.99819 * 57.40007 * 14 9 7 16 16 C 1.54938 * 103.22512 * 200.27821 * 15 14 9 17 17 C 1.54598 * 102.92255 * 37.41703 * 16 15 14 18 18 C 1.47901 * 111.00325 * 300.00426 * 14 9 7 19 19 H 1.09006 * 110.08078 * 26.39891 * 18 14 9 20 20 C 1.52999 * 109.91531 * 265.19598 * 18 14 9 21 21 O 1.42897 * 109.47067 * 295.95394 * 20 18 14 22 22 H 0.96997 * 120.00186 * 359.97438 * 1 2 3 23 23 H 1.09002 * 115.55062 * 278.58285 * 11 9 7 24 24 H 1.09001 * 117.49924 * 359.97438 * 12 11 9 25 25 H 1.08996 * 117.50323 * 145.01842 * 12 11 9 26 26 H 1.08998 * 117.50101 * 214.97949 * 13 11 9 27 27 H 1.09003 * 117.49866 * 359.97087 * 13 11 9 28 28 H 1.09001 * 110.66863 * 81.84478 * 15 14 9 29 29 H 1.08998 * 110.66316 * 318.71277 * 15 14 9 30 30 H 1.08998 * 110.72487 * 279.05420 * 16 15 14 31 31 H 1.09001 * 110.72365 * 155.77101 * 16 15 14 32 32 H 1.08995 * 110.31215 * 96.95818 * 17 16 15 33 33 H 1.09002 * 110.30117 * 219.03053 * 17 16 15 34 34 H 1.08994 * 109.47271 * 55.95666 * 20 18 14 35 35 H 1.09004 * 109.46844 * 175.95418 * 20 18 14 36 36 H 0.96705 * 114.00038 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0812 -1.1959 0.0858 9 6 1.2558 -2.4965 -0.1178 10 1 0.1834 -2.3018 -0.1034 11 6 1.6249 -3.4054 1.0561 12 6 0.4812 -4.0964 1.8015 13 6 1.2359 -2.9390 2.4604 14 7 1.6166 -3.1558 -1.3800 15 6 3.0825 -3.3812 -1.4626 16 6 3.3277 -3.5657 -2.9813 17 6 2.3474 -2.5523 -3.6154 18 6 1.2736 -2.3045 -2.5397 19 1 1.2766 -1.2544 -2.2471 20 6 -0.1046 -2.6908 -3.0803 21 8 -0.0635 -4.0305 -3.5758 22 1 -0.4850 0.8400 0.0004 23 1 2.5604 -3.9547 0.9494 24 1 -0.5342 -3.9030 1.4558 25 1 0.6643 -5.0999 2.1855 26 1 1.9153 -3.1816 3.2775 27 1 0.7174 -1.9842 2.5479 28 1 3.3649 -4.2806 -0.9154 29 1 3.6267 -2.5145 -1.0875 30 1 3.0851 -4.5823 -3.2906 31 1 4.3577 -3.3186 -3.2386 32 1 2.8653 -1.6234 -3.8540 33 1 1.8954 -2.9742 -4.5131 34 1 -0.8412 -2.6218 -2.2799 35 1 -0.3812 -2.0130 -3.8879 36 1 -0.9052 -4.3429 -3.9353 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261166162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:26 Heat of formation + Delta-G solvation = -22.796706 kcal Electronic energy + Delta-G solvation = -16771.608229 eV Core-core repulsion = 14256.361961 eV Total energy + Delta-G solvation = -2515.246268 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.54597 -36.27961 -35.18221 -32.76399 -30.49941 -29.24218 -26.13853 -24.12469 -23.16800 -21.34338 -20.74497 -18.86192 -18.63187 -16.77712 -16.32167 -15.21599 -14.77725 -14.65413 -13.84329 -13.58615 -13.13245 -12.54979 -12.48653 -12.18312 -11.98822 -11.37656 -11.01901 -10.96372 -10.58768 -10.57211 -10.46480 -10.22646 -10.00554 -9.87011 -9.57537 -9.28101 -9.08407 -9.03253 -8.79838 -8.58382 -6.98383 -6.05437 -4.17270 3.21209 3.31041 3.35071 4.33654 4.89797 5.06079 5.15769 5.29253 5.59548 5.66500 5.80895 5.95605 6.06865 6.09697 6.19268 6.27502 6.34845 6.45214 6.48367 6.58212 6.62646 6.72722 6.82400 6.85320 6.98219 7.05161 7.16056 7.22704 7.24542 7.74573 7.81231 8.20494 8.21960 8.36918 8.63416 9.00993 9.48749 10.93852 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.013335 C = 0.010422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.969263 B = 2099.215842 C = 2686.064522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.074 3.926 3 Si 0.881 3.119 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.205 3.795 10 H 0.081 0.919 11 C -0.109 4.109 12 C -0.196 4.196 13 C -0.171 4.171 14 N -0.501 5.501 15 C 0.039 3.961 16 C -0.118 4.118 17 C -0.118 4.118 18 C 0.076 3.924 19 H 0.089 0.911 20 C 0.096 3.904 21 O -0.561 6.561 22 H 0.262 0.738 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.029 0.971 36 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.068 -4.405 -3.927 5.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.129 4.129 3 Si 0.709 3.291 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.568 4.568 8 H 0.073 0.927 9 C 0.098 3.902 10 H 0.099 0.901 11 C -0.128 4.128 12 C -0.233 4.233 13 C -0.209 4.209 14 N -0.225 5.225 15 C -0.089 4.089 16 C -0.156 4.156 17 C -0.157 4.157 18 C -0.033 4.033 19 H 0.106 0.894 20 C 0.018 3.982 21 O -0.363 6.363 22 H 0.072 0.928 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.240 -4.722 -3.726 6.142 hybrid contribution 0.278 1.829 0.051 1.851 sum 1.518 -2.893 -3.675 4.918 Atomic orbital electron populations 1.69900 1.05795 1.26650 1.50291 1.24960 0.94757 0.98975 0.94199 0.86707 0.80492 0.84207 0.77708 1.19726 1.20930 1.20959 1.21531 0.93680 0.91290 1.50249 0.92688 1.19360 0.99025 0.88380 0.83388 0.90147 1.22329 0.96378 1.00120 0.93931 1.22907 0.97910 0.95626 1.06864 1.22690 1.03522 0.98585 0.96088 1.65131 1.11724 1.42679 1.02934 1.23007 0.91856 0.99731 0.94315 1.22390 0.97376 0.99194 0.96670 1.22282 0.96749 0.98038 0.98587 1.22209 0.91907 0.98487 0.90721 0.89374 1.22150 0.98591 0.81851 0.95582 1.86603 1.36389 1.30919 1.82430 0.92810 0.90269 0.89739 0.90956 0.91004 0.88627 0.92420 0.92906 0.91890 0.93010 0.93073 0.91879 0.93554 0.95312 0.79733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.06 12.62 55.43 0.70 -23.36 16 2 C 0.07 1.94 4.75 -17.82 -0.08 1.86 16 3 Si 0.88 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -13.61 5.95 -34.44 -0.20 -13.82 16 8 H 0.05 1.46 6.54 -52.48 -0.34 1.12 16 9 C 0.20 4.95 2.35 -68.87 -0.16 4.79 16 10 H 0.08 2.20 6.72 -51.93 -0.35 1.86 16 11 C -0.11 -2.40 5.03 -90.62 -0.46 -2.85 16 12 C -0.20 -3.92 10.18 -26.69 -0.27 -4.19 16 13 C -0.17 -3.58 9.99 -26.69 -0.27 -3.84 16 14 N -0.50 -11.22 4.88 -216.04 -1.05 -12.27 16 15 C 0.04 0.81 5.52 -1.89 -0.01 0.80 16 16 C -0.12 -2.14 7.06 -24.87 -0.18 -2.32 16 17 C -0.12 -2.23 6.29 -25.37 -0.16 -2.39 16 18 C 0.08 1.63 2.64 -66.64 -0.18 1.45 16 19 H 0.09 2.17 6.02 -51.93 -0.31 1.86 16 20 C 0.10 1.87 6.80 37.16 0.25 2.13 16 21 O -0.56 -10.03 12.67 -35.23 -0.45 -10.47 16 22 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 23 H 0.08 1.70 6.73 -51.93 -0.35 1.35 16 24 H 0.08 1.75 8.07 -51.93 -0.42 1.33 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.10 2.21 8.14 -51.93 -0.42 1.79 16 28 H 0.06 1.14 7.32 -51.93 -0.38 0.76 16 29 H 0.05 1.17 5.92 -51.93 -0.31 0.86 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.13 7.18 -51.93 -0.37 0.75 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.36 4.60 9.12 45.56 0.42 5.01 16 LS Contribution 284.66 15.07 4.29 4.29 Total: -1.00 -27.69 284.66 -8.18 -35.87 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -4.94 Total: 8.77 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -1.71 Total: -18.38 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.36 Total: -35.63 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.45 Total: -10.47 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.69 -8.18 -35.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.077 kcal (2) G-P(sol) polarization free energy of solvation -27.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds