Wall clock time and date at job start Mon Mar 30 2020 03:10:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86800 * 119.99922 * 2 1
4 4 H 1.48501 * 109.47240 * 179.97438 * 3 2 1
5 5 H 1.48494 * 109.47418 * 300.00059 * 3 2 1
6 6 H 1.48497 * 109.47071 * 60.00220 * 3 2 1
7 7 C 1.37875 * 120.00190 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00015 * 185.22944 * 7 2 1
9 9 C 1.50701 * 120.00060 * 5.22826 * 7 2 1
10 10 H 1.08997 * 109.47313 * 354.96270 * 9 7 2
11 11 C 1.52991 * 109.47204 * 234.95943 * 9 7 2
12 12 C 1.53004 * 117.49918 * 132.92024 * 11 9 7
13 13 C 1.52996 * 117.50165 * 64.25859 * 11 9 7
14 14 N 1.46901 * 109.47106 * 114.95691 * 9 7 2
15 15 C 1.48541 * 110.99819 * 57.40007 * 14 9 7
16 16 C 1.54938 * 103.22512 * 200.27821 * 15 14 9
17 17 C 1.54598 * 102.92255 * 37.41703 * 16 15 14
18 18 C 1.47901 * 111.00325 * 300.00426 * 14 9 7
19 19 H 1.09006 * 110.08078 * 26.39891 * 18 14 9
20 20 C 1.52999 * 109.91531 * 265.19598 * 18 14 9
21 21 O 1.42897 * 109.47067 * 295.95394 * 20 18 14
22 22 H 0.96997 * 120.00186 * 359.97438 * 1 2 3
23 23 H 1.09002 * 115.55062 * 278.58285 * 11 9 7
24 24 H 1.09001 * 117.49924 * 359.97438 * 12 11 9
25 25 H 1.08996 * 117.50323 * 145.01842 * 12 11 9
26 26 H 1.08998 * 117.50101 * 214.97949 * 13 11 9
27 27 H 1.09003 * 117.49866 * 359.97087 * 13 11 9
28 28 H 1.09001 * 110.66863 * 81.84478 * 15 14 9
29 29 H 1.08998 * 110.66316 * 318.71277 * 15 14 9
30 30 H 1.08998 * 110.72487 * 279.05420 * 16 15 14
31 31 H 1.09001 * 110.72365 * 155.77101 * 16 15 14
32 32 H 1.08995 * 110.31215 * 96.95818 * 17 16 15
33 33 H 1.09002 * 110.30117 * 219.03053 * 17 16 15
34 34 H 1.08994 * 109.47271 * 55.95666 * 20 18 14
35 35 H 1.09004 * 109.46844 * 175.95418 * 20 18 14
36 36 H 0.96705 * 114.00038 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3464 0.0006
5 1 1.8904 2.3965 -1.2124
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0812 -1.1959 0.0858
9 6 1.2558 -2.4965 -0.1178
10 1 0.1834 -2.3018 -0.1034
11 6 1.6249 -3.4054 1.0561
12 6 0.4812 -4.0964 1.8015
13 6 1.2359 -2.9390 2.4604
14 7 1.6166 -3.1558 -1.3800
15 6 3.0825 -3.3812 -1.4626
16 6 3.3277 -3.5657 -2.9813
17 6 2.3474 -2.5523 -3.6154
18 6 1.2736 -2.3045 -2.5397
19 1 1.2766 -1.2544 -2.2471
20 6 -0.1046 -2.6908 -3.0803
21 8 -0.0635 -4.0305 -3.5758
22 1 -0.4850 0.8400 0.0004
23 1 2.5604 -3.9547 0.9494
24 1 -0.5342 -3.9030 1.4558
25 1 0.6643 -5.0999 2.1855
26 1 1.9153 -3.1816 3.2775
27 1 0.7174 -1.9842 2.5479
28 1 3.3649 -4.2806 -0.9154
29 1 3.6267 -2.5145 -1.0875
30 1 3.0851 -4.5823 -3.2906
31 1 4.3577 -3.3186 -3.2386
32 1 2.8653 -1.6234 -3.8540
33 1 1.8954 -2.9742 -4.5131
34 1 -0.8412 -2.6218 -2.2799
35 1 -0.3812 -2.0130 -3.8879
36 1 -0.9052 -4.3429 -3.9353
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261166162.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:10:26
Heat of formation + Delta-G solvation = -22.796706 kcal
Electronic energy + Delta-G solvation = -16771.608229 eV
Core-core repulsion = 14256.361961 eV
Total energy + Delta-G solvation = -2515.246268 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-38.54597 -36.27961 -35.18221 -32.76399 -30.49941 -29.24218 -26.13853 -24.12469
-23.16800 -21.34338 -20.74497 -18.86192 -18.63187 -16.77712 -16.32167 -15.21599
-14.77725 -14.65413 -13.84329 -13.58615 -13.13245 -12.54979 -12.48653 -12.18312
-11.98822 -11.37656 -11.01901 -10.96372 -10.58768 -10.57211 -10.46480 -10.22646
-10.00554 -9.87011 -9.57537 -9.28101 -9.08407 -9.03253 -8.79838 -8.58382
-6.98383 -6.05437 -4.17270 3.21209 3.31041 3.35071 4.33654 4.89797
5.06079 5.15769 5.29253 5.59548 5.66500 5.80895 5.95605 6.06865
6.09697 6.19268 6.27502 6.34845 6.45214 6.48367 6.58212 6.62646
6.72722 6.82400 6.85320 6.98219 7.05161 7.16056 7.22704 7.24542
7.74573 7.81231 8.20494 8.21960 8.36918 8.63416 9.00993 9.48749
10.93852
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.019306 B = 0.013335 C = 0.010422
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1449.969263 B = 2099.215842 C = 2686.064522
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.888 5.888
2 C 0.074 3.926
3 Si 0.881 3.119
4 H -0.273 1.273
5 H -0.283 1.283
6 H -0.284 1.284
7 C -0.528 4.528
8 H 0.055 0.945
9 C 0.205 3.795
10 H 0.081 0.919
11 C -0.109 4.109
12 C -0.196 4.196
13 C -0.171 4.171
14 N -0.501 5.501
15 C 0.039 3.961
16 C -0.118 4.118
17 C -0.118 4.118
18 C 0.076 3.924
19 H 0.089 0.911
20 C 0.096 3.904
21 O -0.561 6.561
22 H 0.262 0.738
23 H 0.079 0.921
24 H 0.084 0.916
25 H 0.072 0.928
26 H 0.071 0.929
27 H 0.095 0.905
28 H 0.057 0.943
29 H 0.053 0.947
30 H 0.062 0.938
31 H 0.051 0.949
32 H 0.050 0.950
33 H 0.062 0.938
34 H 0.046 0.954
35 H 0.029 0.971
36 H 0.359 0.641
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.068 -4.405 -3.927 5.997
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.526 5.526
2 C -0.129 4.129
3 Si 0.709 3.291
4 H -0.197 1.197
5 H -0.209 1.209
6 H -0.210 1.210
7 C -0.568 4.568
8 H 0.073 0.927
9 C 0.098 3.902
10 H 0.099 0.901
11 C -0.128 4.128
12 C -0.233 4.233
13 C -0.209 4.209
14 N -0.225 5.225
15 C -0.089 4.089
16 C -0.156 4.156
17 C -0.157 4.157
18 C -0.033 4.033
19 H 0.106 0.894
20 C 0.018 3.982
21 O -0.363 6.363
22 H 0.072 0.928
23 H 0.097 0.903
24 H 0.103 0.897
25 H 0.090 0.910
26 H 0.090 0.910
27 H 0.114 0.886
28 H 0.076 0.924
29 H 0.071 0.929
30 H 0.081 0.919
31 H 0.070 0.930
32 H 0.069 0.931
33 H 0.081 0.919
34 H 0.064 0.936
35 H 0.047 0.953
36 H 0.203 0.797
Dipole moment (debyes) X Y Z Total
from point charges 1.240 -4.722 -3.726 6.142
hybrid contribution 0.278 1.829 0.051 1.851
sum 1.518 -2.893 -3.675 4.918
Atomic orbital electron populations
1.69900 1.05795 1.26650 1.50291 1.24960 0.94757 0.98975 0.94199
0.86707 0.80492 0.84207 0.77708 1.19726 1.20930 1.20959 1.21531
0.93680 0.91290 1.50249 0.92688 1.19360 0.99025 0.88380 0.83388
0.90147 1.22329 0.96378 1.00120 0.93931 1.22907 0.97910 0.95626
1.06864 1.22690 1.03522 0.98585 0.96088 1.65131 1.11724 1.42679
1.02934 1.23007 0.91856 0.99731 0.94315 1.22390 0.97376 0.99194
0.96670 1.22282 0.96749 0.98038 0.98587 1.22209 0.91907 0.98487
0.90721 0.89374 1.22150 0.98591 0.81851 0.95582 1.86603 1.36389
1.30919 1.82430 0.92810 0.90269 0.89739 0.90956 0.91004 0.88627
0.92420 0.92906 0.91890 0.93010 0.93073 0.91879 0.93554 0.95312
0.79733
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -24.06 12.62 55.43 0.70 -23.36 16
2 C 0.07 1.94 4.75 -17.82 -0.08 1.86 16
3 Si 0.88 20.58 29.54 -169.99 -5.02 15.56 16
4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
7 C -0.53 -13.61 5.95 -34.44 -0.20 -13.82 16
8 H 0.05 1.46 6.54 -52.48 -0.34 1.12 16
9 C 0.20 4.95 2.35 -68.87 -0.16 4.79 16
10 H 0.08 2.20 6.72 -51.93 -0.35 1.86 16
11 C -0.11 -2.40 5.03 -90.62 -0.46 -2.85 16
12 C -0.20 -3.92 10.18 -26.69 -0.27 -4.19 16
13 C -0.17 -3.58 9.99 -26.69 -0.27 -3.84 16
14 N -0.50 -11.22 4.88 -216.04 -1.05 -12.27 16
15 C 0.04 0.81 5.52 -1.89 -0.01 0.80 16
16 C -0.12 -2.14 7.06 -24.87 -0.18 -2.32 16
17 C -0.12 -2.23 6.29 -25.37 -0.16 -2.39 16
18 C 0.08 1.63 2.64 -66.64 -0.18 1.45 16
19 H 0.09 2.17 6.02 -51.93 -0.31 1.86 16
20 C 0.10 1.87 6.80 37.16 0.25 2.13 16
21 O -0.56 -10.03 12.67 -35.23 -0.45 -10.47 16
22 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16
23 H 0.08 1.70 6.73 -51.93 -0.35 1.35 16
24 H 0.08 1.75 8.07 -51.93 -0.42 1.33 16
25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
26 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16
27 H 0.10 2.21 8.14 -51.93 -0.42 1.79 16
28 H 0.06 1.14 7.32 -51.93 -0.38 0.76 16
29 H 0.05 1.17 5.92 -51.93 -0.31 0.86 16
30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
33 H 0.06 1.13 7.18 -51.93 -0.37 0.75 16
34 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16
35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
36 H 0.36 4.60 9.12 45.56 0.42 5.01 16
LS Contribution 284.66 15.07 4.29 4.29
Total: -1.00 -27.69 284.66 -8.18 -35.87
By element:
Atomic # 1 Polarization: 13.70 SS G_CDS: -4.94 Total: 8.77 kcal
Atomic # 6 Polarization: -16.67 SS G_CDS: -1.71 Total: -18.38 kcal
Atomic # 7 Polarization: -35.28 SS G_CDS: -0.36 Total: -35.63 kcal
Atomic # 8 Polarization: -10.03 SS G_CDS: -0.45 Total: -10.47 kcal
Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal
Total LS contribution 4.29 Total: 4.29 kcal
Total: -27.69 -8.18 -35.87 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261166162.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.077 kcal
(2) G-P(sol) polarization free energy of solvation -27.691 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.613 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.874 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.797 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds