Wall clock time and date at job start Mon Mar 30 2020 03:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99922 * 2 1 4 4 H 1.48501 * 109.47240 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47418 * 300.00059 * 3 2 1 6 6 H 1.48497 * 109.47071 * 60.00220 * 3 2 1 7 7 C 1.37875 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00015 * 185.22944 * 7 2 1 9 9 C 1.50701 * 120.00060 * 5.22826 * 7 2 1 10 10 H 1.08997 * 109.47313 * 354.96270 * 9 7 2 11 11 C 1.52991 * 109.47204 * 234.95943 * 9 7 2 12 12 C 1.53004 * 117.49918 * 132.92024 * 11 9 7 13 13 C 1.52996 * 117.50165 * 64.25859 * 11 9 7 14 14 N 1.46901 * 109.47106 * 114.95691 * 9 7 2 15 15 C 1.48541 * 110.99819 * 57.40007 * 14 9 7 16 16 C 1.54938 * 103.22512 * 200.27821 * 15 14 9 17 17 C 1.54598 * 102.92255 * 37.41703 * 16 15 14 18 18 C 1.47901 * 111.00325 * 300.00426 * 14 9 7 19 19 H 1.09006 * 110.08078 * 26.39891 * 18 14 9 20 20 C 1.52999 * 109.91531 * 265.19598 * 18 14 9 21 21 O 1.42897 * 109.47067 * 295.95394 * 20 18 14 22 22 H 0.96997 * 120.00186 * 359.97438 * 1 2 3 23 23 H 1.09002 * 115.55062 * 278.58285 * 11 9 7 24 24 H 1.09001 * 117.49924 * 359.97438 * 12 11 9 25 25 H 1.08996 * 117.50323 * 145.01842 * 12 11 9 26 26 H 1.08998 * 117.50101 * 214.97949 * 13 11 9 27 27 H 1.09003 * 117.49866 * 359.97087 * 13 11 9 28 28 H 1.09001 * 110.66863 * 81.84478 * 15 14 9 29 29 H 1.08998 * 110.66316 * 318.71277 * 15 14 9 30 30 H 1.08998 * 110.72487 * 279.05420 * 16 15 14 31 31 H 1.09001 * 110.72365 * 155.77101 * 16 15 14 32 32 H 1.08995 * 110.31215 * 96.95818 * 17 16 15 33 33 H 1.09002 * 110.30117 * 219.03053 * 17 16 15 34 34 H 1.08994 * 109.47271 * 55.95666 * 20 18 14 35 35 H 1.09004 * 109.46844 * 175.95418 * 20 18 14 36 36 H 0.96705 * 114.00038 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0812 -1.1959 0.0858 9 6 1.2558 -2.4965 -0.1178 10 1 0.1834 -2.3018 -0.1034 11 6 1.6249 -3.4054 1.0561 12 6 0.4812 -4.0964 1.8015 13 6 1.2359 -2.9390 2.4604 14 7 1.6166 -3.1558 -1.3800 15 6 3.0825 -3.3812 -1.4626 16 6 3.3277 -3.5657 -2.9813 17 6 2.3474 -2.5523 -3.6154 18 6 1.2736 -2.3045 -2.5397 19 1 1.2766 -1.2544 -2.2471 20 6 -0.1046 -2.6908 -3.0803 21 8 -0.0635 -4.0305 -3.5758 22 1 -0.4850 0.8400 0.0004 23 1 2.5604 -3.9547 0.9494 24 1 -0.5342 -3.9030 1.4558 25 1 0.6643 -5.0999 2.1855 26 1 1.9153 -3.1816 3.2775 27 1 0.7174 -1.9842 2.5479 28 1 3.3649 -4.2806 -0.9154 29 1 3.6267 -2.5145 -1.0875 30 1 3.0851 -4.5823 -3.2906 31 1 4.3577 -3.3186 -3.2386 32 1 2.8653 -1.6234 -3.8540 33 1 1.8954 -2.9742 -4.5131 34 1 -0.8412 -2.6218 -2.2799 35 1 -0.3812 -2.0130 -3.8879 36 1 -0.9052 -4.3429 -3.9353 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261166162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:26 Heat of formation + Delta-G solvation = -41.947394 kcal Electronic energy + Delta-G solvation = -16772.438665 eV Core-core repulsion = 14256.361961 eV Total energy + Delta-G solvation = -2516.076704 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.22403 -37.91323 -36.70597 -34.70372 -32.23420 -30.82498 -28.02497 -25.75728 -24.97481 -22.99930 -22.35412 -20.50205 -20.42502 -18.37674 -18.19614 -16.88709 -16.56559 -16.31752 -15.44270 -15.25679 -14.86419 -14.30136 -14.18026 -13.74204 -13.71084 -13.11428 -12.81230 -12.76939 -12.30030 -12.22682 -12.20551 -11.86802 -11.75051 -11.44566 -11.14547 -10.97454 -10.86919 -10.68188 -10.59677 -10.51271 -8.82268 -8.03468 -6.22493 1.33282 1.38453 1.46930 2.38754 3.07629 3.31717 3.59661 3.64963 4.00333 4.13804 4.26783 4.34419 4.42452 4.50842 4.59704 4.70140 4.73738 4.86985 4.91438 4.94770 5.06054 5.12348 5.24651 5.25529 5.27538 5.41736 5.46625 5.49020 5.60867 5.72082 5.88357 6.26791 6.47992 6.78786 7.01437 7.12004 7.45413 8.92648 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.013335 C = 0.010422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.969263 B = 2099.215842 C = 2686.064522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.035 3.965 3 Si 0.933 3.067 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.044 0.956 9 C 0.213 3.787 10 H 0.042 0.958 11 C -0.128 4.128 12 C -0.177 4.177 13 C -0.169 4.169 14 N -0.505 5.505 15 C 0.037 3.963 16 C -0.108 4.108 17 C -0.114 4.114 18 C 0.067 3.933 19 H 0.051 0.949 20 C 0.107 3.893 21 O -0.567 6.567 22 H 0.261 0.739 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.019 0.981 35 H 0.048 0.952 36 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.059 -5.437 -4.561 7.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.166 4.166 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.063 0.937 9 C 0.106 3.894 10 H 0.060 0.940 11 C -0.147 4.147 12 C -0.214 4.214 13 C -0.207 4.207 14 N -0.228 5.228 15 C -0.091 4.091 16 C -0.146 4.146 17 C -0.152 4.152 18 C -0.042 4.042 19 H 0.069 0.931 20 C 0.029 3.971 21 O -0.373 6.373 22 H 0.070 0.930 23 H 0.106 0.894 24 H 0.090 0.910 25 H 0.123 0.877 26 H 0.117 0.883 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.037 0.963 35 H 0.066 0.934 36 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.226 -5.767 -4.372 7.572 hybrid contribution -0.059 2.094 0.230 2.108 sum 2.166 -3.673 -4.143 5.945 Atomic orbital electron populations 1.70011 1.06874 1.27038 1.51503 1.25506 0.95319 1.01473 0.94253 0.85895 0.79404 0.81172 0.77573 1.19563 1.20621 1.20948 1.21627 0.93075 0.92367 1.49593 0.93746 1.19089 0.96458 0.88650 0.85205 0.94020 1.22297 0.97714 1.01018 0.93686 1.22916 0.96479 0.96800 1.05168 1.22643 1.03935 0.97746 0.96333 1.65114 1.13039 1.42279 1.02409 1.23046 0.90368 0.99195 0.96480 1.22359 0.98600 0.99349 0.94309 1.22258 0.96127 0.98702 0.98087 1.22228 0.94145 0.96371 0.91466 0.93100 1.21877 0.96655 0.83202 0.95385 1.86520 1.38486 1.29881 1.82418 0.92968 0.89376 0.91040 0.87732 0.88268 0.91642 0.91536 0.94880 0.91140 0.90542 0.92597 0.90513 0.96274 0.93359 0.76958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.14 12.62 21.45 0.27 -50.87 16 2 C 0.03 1.86 4.75 84.65 0.40 2.26 16 3 Si 0.93 42.81 29.54 68.60 2.03 44.83 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 7 C -0.53 -27.70 5.95 25.60 0.15 -27.55 16 8 H 0.04 2.39 6.54 -2.91 -0.02 2.37 16 9 C 0.21 10.50 2.35 44.17 0.10 10.60 16 10 H 0.04 2.38 6.72 -2.39 -0.02 2.36 16 11 C -0.13 -5.61 5.03 -10.80 -0.05 -5.66 16 12 C -0.18 -6.85 10.18 30.62 0.31 -6.54 16 13 C -0.17 -6.96 9.99 30.62 0.31 -6.65 16 14 N -0.50 -22.54 4.88 -837.43 -4.09 -26.63 16 15 C 0.04 1.49 5.52 86.65 0.48 1.97 16 16 C -0.11 -3.64 7.06 31.80 0.22 -3.41 16 17 C -0.11 -4.06 6.29 31.47 0.20 -3.86 16 18 C 0.07 2.88 2.64 45.06 0.12 3.00 16 19 H 0.05 2.57 6.02 -2.38 -0.01 2.56 16 20 C 0.11 4.13 6.80 71.98 0.49 4.62 16 21 O -0.57 -19.21 12.67 -148.98 -1.89 -21.10 16 22 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 23 H 0.09 3.68 6.73 -2.39 -0.02 3.66 16 24 H 0.07 2.95 8.07 -2.39 -0.02 2.93 16 25 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 26 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 27 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.07 2.51 7.32 -2.39 -0.02 2.49 16 29 H 0.03 1.45 5.92 -2.39 -0.01 1.43 16 30 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 2.53 7.18 -2.39 -0.02 2.51 16 34 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.38 8.94 9.12 -74.05 -0.68 8.27 16 Total: -1.00 -59.63 284.66 -0.56 -60.19 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.39 Total: 24.80 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 2.73 Total: -31.23 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -3.82 Total: -77.49 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -1.89 Total: -21.10 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -59.63 -0.56 -60.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.240 kcal (2) G-P(sol) polarization free energy of solvation -59.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds