Wall clock time and date at job start Mon Mar 30 2020 03:10:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86800 * 119.99922 * 2 1
4 4 H 1.48501 * 109.47240 * 179.97438 * 3 2 1
5 5 H 1.48494 * 109.47418 * 300.00059 * 3 2 1
6 6 H 1.48497 * 109.47071 * 60.00220 * 3 2 1
7 7 C 1.37875 * 120.00190 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00015 * 185.22944 * 7 2 1
9 9 C 1.50701 * 120.00060 * 5.22826 * 7 2 1
10 10 H 1.08997 * 109.47313 * 354.96270 * 9 7 2
11 11 C 1.52991 * 109.47204 * 234.95943 * 9 7 2
12 12 C 1.53004 * 117.49918 * 132.92024 * 11 9 7
13 13 C 1.52996 * 117.50165 * 64.25859 * 11 9 7
14 14 N 1.46901 * 109.47106 * 114.95691 * 9 7 2
15 15 C 1.48541 * 110.99819 * 57.40007 * 14 9 7
16 16 C 1.54938 * 103.22512 * 200.27821 * 15 14 9
17 17 C 1.54598 * 102.92255 * 37.41703 * 16 15 14
18 18 C 1.47901 * 111.00325 * 300.00426 * 14 9 7
19 19 H 1.09006 * 110.08078 * 26.39891 * 18 14 9
20 20 C 1.52999 * 109.91531 * 265.19598 * 18 14 9
21 21 O 1.42897 * 109.47067 * 295.95394 * 20 18 14
22 22 H 0.96997 * 120.00186 * 359.97438 * 1 2 3
23 23 H 1.09002 * 115.55062 * 278.58285 * 11 9 7
24 24 H 1.09001 * 117.49924 * 359.97438 * 12 11 9
25 25 H 1.08996 * 117.50323 * 145.01842 * 12 11 9
26 26 H 1.08998 * 117.50101 * 214.97949 * 13 11 9
27 27 H 1.09003 * 117.49866 * 359.97087 * 13 11 9
28 28 H 1.09001 * 110.66863 * 81.84478 * 15 14 9
29 29 H 1.08998 * 110.66316 * 318.71277 * 15 14 9
30 30 H 1.08998 * 110.72487 * 279.05420 * 16 15 14
31 31 H 1.09001 * 110.72365 * 155.77101 * 16 15 14
32 32 H 1.08995 * 110.31215 * 96.95818 * 17 16 15
33 33 H 1.09002 * 110.30117 * 219.03053 * 17 16 15
34 34 H 1.08994 * 109.47271 * 55.95666 * 20 18 14
35 35 H 1.09004 * 109.46844 * 175.95418 * 20 18 14
36 36 H 0.96705 * 114.00038 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3464 0.0006
5 1 1.8904 2.3965 -1.2124
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0812 -1.1959 0.0858
9 6 1.2558 -2.4965 -0.1178
10 1 0.1834 -2.3018 -0.1034
11 6 1.6249 -3.4054 1.0561
12 6 0.4812 -4.0964 1.8015
13 6 1.2359 -2.9390 2.4604
14 7 1.6166 -3.1558 -1.3800
15 6 3.0825 -3.3812 -1.4626
16 6 3.3277 -3.5657 -2.9813
17 6 2.3474 -2.5523 -3.6154
18 6 1.2736 -2.3045 -2.5397
19 1 1.2766 -1.2544 -2.2471
20 6 -0.1046 -2.6908 -3.0803
21 8 -0.0635 -4.0305 -3.5758
22 1 -0.4850 0.8400 0.0004
23 1 2.5604 -3.9547 0.9494
24 1 -0.5342 -3.9030 1.4558
25 1 0.6643 -5.0999 2.1855
26 1 1.9153 -3.1816 3.2775
27 1 0.7174 -1.9842 2.5479
28 1 3.3649 -4.2806 -0.9154
29 1 3.6267 -2.5145 -1.0875
30 1 3.0851 -4.5823 -3.2906
31 1 4.3577 -3.3186 -3.2386
32 1 2.8653 -1.6234 -3.8540
33 1 1.8954 -2.9742 -4.5131
34 1 -0.8412 -2.6218 -2.2799
35 1 -0.3812 -2.0130 -3.8879
36 1 -0.9052 -4.3429 -3.9353
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261166162.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:10:26
Heat of formation + Delta-G solvation = -41.947394 kcal
Electronic energy + Delta-G solvation = -16772.438665 eV
Core-core repulsion = 14256.361961 eV
Total energy + Delta-G solvation = -2516.076704 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.22403 -37.91323 -36.70597 -34.70372 -32.23420 -30.82498 -28.02497 -25.75728
-24.97481 -22.99930 -22.35412 -20.50205 -20.42502 -18.37674 -18.19614 -16.88709
-16.56559 -16.31752 -15.44270 -15.25679 -14.86419 -14.30136 -14.18026 -13.74204
-13.71084 -13.11428 -12.81230 -12.76939 -12.30030 -12.22682 -12.20551 -11.86802
-11.75051 -11.44566 -11.14547 -10.97454 -10.86919 -10.68188 -10.59677 -10.51271
-8.82268 -8.03468 -6.22493 1.33282 1.38453 1.46930 2.38754 3.07629
3.31717 3.59661 3.64963 4.00333 4.13804 4.26783 4.34419 4.42452
4.50842 4.59704 4.70140 4.73738 4.86985 4.91438 4.94770 5.06054
5.12348 5.24651 5.25529 5.27538 5.41736 5.46625 5.49020 5.60867
5.72082 5.88357 6.26791 6.47992 6.78786 7.01437 7.12004 7.45413
8.92648
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.019306 B = 0.013335 C = 0.010422
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1449.969263 B = 2099.215842 C = 2686.064522
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C 0.035 3.965
3 Si 0.933 3.067
4 H -0.271 1.271
5 H -0.280 1.280
6 H -0.283 1.283
7 C -0.527 4.527
8 H 0.044 0.956
9 C 0.213 3.787
10 H 0.042 0.958
11 C -0.128 4.128
12 C -0.177 4.177
13 C -0.169 4.169
14 N -0.505 5.505
15 C 0.037 3.963
16 C -0.108 4.108
17 C -0.114 4.114
18 C 0.067 3.933
19 H 0.051 0.949
20 C 0.107 3.893
21 O -0.567 6.567
22 H 0.261 0.739
23 H 0.088 0.912
24 H 0.071 0.929
25 H 0.104 0.896
26 H 0.099 0.901
27 H 0.065 0.935
28 H 0.066 0.934
29 H 0.033 0.967
30 H 0.070 0.930
31 H 0.076 0.924
32 H 0.055 0.945
33 H 0.076 0.924
34 H 0.019 0.981
35 H 0.048 0.952
36 H 0.383 0.617
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.059 -5.437 -4.561 7.389
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.554 5.554
2 C -0.166 4.166
3 Si 0.760 3.240
4 H -0.196 1.196
5 H -0.206 1.206
6 H -0.209 1.209
7 C -0.567 4.567
8 H 0.063 0.937
9 C 0.106 3.894
10 H 0.060 0.940
11 C -0.147 4.147
12 C -0.214 4.214
13 C -0.207 4.207
14 N -0.228 5.228
15 C -0.091 4.091
16 C -0.146 4.146
17 C -0.152 4.152
18 C -0.042 4.042
19 H 0.069 0.931
20 C 0.029 3.971
21 O -0.373 6.373
22 H 0.070 0.930
23 H 0.106 0.894
24 H 0.090 0.910
25 H 0.123 0.877
26 H 0.117 0.883
27 H 0.084 0.916
28 H 0.085 0.915
29 H 0.051 0.949
30 H 0.089 0.911
31 H 0.095 0.905
32 H 0.074 0.926
33 H 0.095 0.905
34 H 0.037 0.963
35 H 0.066 0.934
36 H 0.230 0.770
Dipole moment (debyes) X Y Z Total
from point charges 2.226 -5.767 -4.372 7.572
hybrid contribution -0.059 2.094 0.230 2.108
sum 2.166 -3.673 -4.143 5.945
Atomic orbital electron populations
1.70011 1.06874 1.27038 1.51503 1.25506 0.95319 1.01473 0.94253
0.85895 0.79404 0.81172 0.77573 1.19563 1.20621 1.20948 1.21627
0.93075 0.92367 1.49593 0.93746 1.19089 0.96458 0.88650 0.85205
0.94020 1.22297 0.97714 1.01018 0.93686 1.22916 0.96479 0.96800
1.05168 1.22643 1.03935 0.97746 0.96333 1.65114 1.13039 1.42279
1.02409 1.23046 0.90368 0.99195 0.96480 1.22359 0.98600 0.99349
0.94309 1.22258 0.96127 0.98702 0.98087 1.22228 0.94145 0.96371
0.91466 0.93100 1.21877 0.96655 0.83202 0.95385 1.86520 1.38486
1.29881 1.82418 0.92968 0.89376 0.91040 0.87732 0.88268 0.91642
0.91536 0.94880 0.91140 0.90542 0.92597 0.90513 0.96274 0.93359
0.76958
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -51.14 12.62 21.45 0.27 -50.87 16
2 C 0.03 1.86 4.75 84.65 0.40 2.26 16
3 Si 0.93 42.81 29.54 68.60 2.03 44.83 16
4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16
5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16
6 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16
7 C -0.53 -27.70 5.95 25.60 0.15 -27.55 16
8 H 0.04 2.39 6.54 -2.91 -0.02 2.37 16
9 C 0.21 10.50 2.35 44.17 0.10 10.60 16
10 H 0.04 2.38 6.72 -2.39 -0.02 2.36 16
11 C -0.13 -5.61 5.03 -10.80 -0.05 -5.66 16
12 C -0.18 -6.85 10.18 30.62 0.31 -6.54 16
13 C -0.17 -6.96 9.99 30.62 0.31 -6.65 16
14 N -0.50 -22.54 4.88 -837.43 -4.09 -26.63 16
15 C 0.04 1.49 5.52 86.65 0.48 1.97 16
16 C -0.11 -3.64 7.06 31.80 0.22 -3.41 16
17 C -0.11 -4.06 6.29 31.47 0.20 -3.86 16
18 C 0.07 2.88 2.64 45.06 0.12 3.00 16
19 H 0.05 2.57 6.02 -2.38 -0.01 2.56 16
20 C 0.11 4.13 6.80 71.98 0.49 4.62 16
21 O -0.57 -19.21 12.67 -148.98 -1.89 -21.10 16
22 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16
23 H 0.09 3.68 6.73 -2.39 -0.02 3.66 16
24 H 0.07 2.95 8.07 -2.39 -0.02 2.93 16
25 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16
26 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16
27 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16
28 H 0.07 2.51 7.32 -2.39 -0.02 2.49 16
29 H 0.03 1.45 5.92 -2.39 -0.01 1.43 16
30 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16
31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16
32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
33 H 0.08 2.53 7.18 -2.39 -0.02 2.51 16
34 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16
35 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16
36 H 0.38 8.94 9.12 -74.05 -0.68 8.27 16
Total: -1.00 -59.63 284.66 -0.56 -60.19
By element:
Atomic # 1 Polarization: 24.41 SS G_CDS: 0.39 Total: 24.80 kcal
Atomic # 6 Polarization: -33.96 SS G_CDS: 2.73 Total: -31.23 kcal
Atomic # 7 Polarization: -73.68 SS G_CDS: -3.82 Total: -77.49 kcal
Atomic # 8 Polarization: -19.21 SS G_CDS: -1.89 Total: -21.10 kcal
Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal
Total: -59.63 -0.56 -60.19 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261166162.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.240 kcal
(2) G-P(sol) polarization free energy of solvation -59.626 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.386 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.187 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.947 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds