Wall clock time and date at job start Mon Mar 30 2020 03:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86802 * 119.99924 * 2 1 4 4 H 1.48498 * 109.47228 * 89.99737 * 3 2 1 5 5 H 1.48500 * 109.46960 * 329.99694 * 3 2 1 6 6 H 1.48502 * 109.47068 * 210.00199 * 3 2 1 7 7 C 1.37874 * 120.00606 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00697 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99469 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.64814 * 59.29712 * 9 7 2 11 11 C 1.54595 * 110.71967 * 296.14325 * 9 7 2 12 12 C 1.53994 * 105.13871 * 219.68278 * 11 9 7 13 13 N 1.47900 * 107.06126 * 358.78332 * 12 11 9 14 14 C 1.46895 * 111.00685 * 145.83938 * 13 12 11 15 15 H 1.09000 * 110.01627 * 294.55750 * 14 13 12 16 16 C 1.54272 * 110.02954 * 55.94675 * 14 13 12 17 17 C 1.54888 * 104.19339 * 142.89620 * 16 14 13 18 18 C 1.54883 * 102.74948 * 322.05708 * 17 16 14 19 19 C 1.53879 * 110.03525 * 173.11294 * 14 13 12 20 20 H 1.08997 * 110.02962 * 121.42740 * 19 14 13 21 21 O 1.42898 * 110.03082 * 0.02562 * 19 14 13 22 22 C 1.48737 * 105.94255 * 25.19688 * 13 12 11 23 23 H 0.97004 * 120.00067 * 180.02562 * 1 2 3 24 24 H 1.08997 * 110.31535 * 338.60343 * 11 9 7 25 25 H 1.09005 * 110.30636 * 100.67627 * 11 9 7 26 26 H 1.09010 * 109.91577 * 118.12972 * 12 11 9 27 27 H 1.08997 * 109.92044 * 239.42179 * 12 11 9 28 28 H 1.09000 * 110.48585 * 261.57483 * 16 14 13 29 29 H 1.09002 * 110.48659 * 24.08912 * 16 14 13 30 30 H 1.09000 * 110.75558 * 80.37431 * 17 16 14 31 31 H 1.08996 * 110.75388 * 203.74106 * 17 16 14 32 32 H 1.09006 * 110.48902 * 156.61912 * 18 17 16 33 33 H 1.08998 * 110.49210 * 279.12823 * 18 17 16 34 34 H 0.96693 * 114.00055 * 179.97438 * 21 19 14 35 35 H 1.09002 * 110.83639 * 202.58393 * 22 13 12 36 36 H 1.08994 * 110.58470 * 79.38552 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4000 5 1 1.4465 2.6526 -0.7001 6 1 3.5466 1.4402 -0.7001 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6082 -2.5718 -0.8767 11 6 0.4253 -2.6540 1.2983 12 6 0.5678 -4.1361 1.6912 13 7 1.4012 -4.7818 0.6540 14 6 2.2450 -5.8340 1.2361 15 1 2.9702 -5.3944 1.9210 16 6 1.3689 -6.8615 1.9821 17 6 2.0539 -8.2215 1.6987 18 6 2.5126 -8.0730 0.2268 19 6 2.9722 -6.6043 0.1200 20 1 4.0508 -6.5391 0.2630 21 8 2.6145 -6.0705 -1.1564 22 6 2.2308 -3.6978 0.0632 23 1 -0.4850 -0.8401 0.0004 24 1 0.8295 -2.0141 2.0826 25 1 -0.6206 -2.4093 1.1127 26 1 1.0553 -4.2174 2.6629 27 1 -0.4144 -4.6075 1.7250 28 1 1.3633 -6.6528 3.0519 29 1 0.3528 -6.8544 1.5876 30 1 2.9101 -8.3674 2.3572 31 1 1.3426 -9.0410 1.8008 32 1 3.3417 -8.7484 0.0155 33 1 1.6825 -8.2654 -0.4529 34 1 3.0412 -6.5143 -1.9019 35 1 2.5699 -3.9701 -0.9363 36 1 3.0783 -3.4686 0.7090 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306960011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:47 Heat of formation + Delta-G solvation = -55.011086 kcal Electronic energy + Delta-G solvation = -16367.037291 eV Core-core repulsion = 13850.394104 eV Total energy + Delta-G solvation = -2516.643188 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.31522 -36.89350 -34.79792 -33.04199 -30.03469 -28.33908 -27.35863 -26.15934 -23.81724 -21.02458 -20.78227 -19.41525 -19.07551 -17.36322 -16.63640 -15.68749 -14.91431 -14.66643 -14.09740 -13.72685 -13.56700 -13.13096 -12.47529 -12.19842 -12.12970 -11.75840 -11.46096 -11.19951 -11.10613 -10.80858 -10.65684 -10.45531 -10.29195 -10.14598 -10.04100 -9.78325 -9.50968 -9.22882 -8.37947 -8.26190 -7.59410 -6.25566 -3.96576 3.46870 3.50824 3.66595 4.34579 4.57068 4.60252 4.65105 4.79621 5.11075 5.33537 5.44727 5.48428 5.57089 5.61482 5.76961 5.82584 5.83565 5.97023 6.00235 6.14806 6.21679 6.23468 6.37465 6.48869 6.57578 6.92050 7.07072 7.15424 7.41209 7.65317 7.73189 7.87314 8.06200 8.38622 8.53132 8.98584 9.75896 11.13375 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.051272 B = 0.006785 C = 0.006371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.980704 B = 4125.508678 C = 4393.849704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.019 3.981 3 Si 1.069 2.931 4 H -0.290 1.290 5 H -0.285 1.285 6 H -0.290 1.290 7 C -0.593 4.593 8 H 0.047 0.953 9 C 0.035 3.965 10 H 0.027 0.973 11 C -0.121 4.121 12 C 0.036 3.964 13 N -0.496 5.496 14 C 0.077 3.923 15 H 0.042 0.958 16 C -0.118 4.118 17 C -0.121 4.121 18 C -0.154 4.154 19 C 0.110 3.890 20 H 0.049 0.951 21 O -0.532 6.532 22 C 0.058 3.942 23 H 0.273 0.727 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.026 0.974 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.361 0.639 35 H 0.081 0.919 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.020 -14.892 2.506 15.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.185 4.185 3 Si 0.898 3.102 4 H -0.217 1.217 5 H -0.210 1.210 6 H -0.216 1.216 7 C -0.632 4.632 8 H 0.065 0.935 9 C 0.016 3.984 10 H 0.045 0.955 11 C -0.160 4.160 12 C -0.092 4.092 13 N -0.220 5.220 14 C -0.033 4.033 15 H 0.060 0.940 16 C -0.156 4.156 17 C -0.159 4.159 18 C -0.192 4.192 19 C 0.050 3.950 20 H 0.067 0.933 21 O -0.334 6.334 22 C -0.069 4.069 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.206 0.794 35 H 0.100 0.900 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.137 -13.092 2.487 13.953 hybrid contribution 1.130 -1.749 0.489 2.139 sum 5.267 -14.841 2.976 16.027 Atomic orbital electron populations 1.70734 1.06832 1.31110 1.46417 1.25754 0.96592 1.02401 0.93784 0.83544 0.74713 0.75328 0.76591 1.21656 1.21043 1.21584 1.21978 0.93939 0.91476 1.55759 0.93465 1.19709 0.93101 0.92815 0.92788 0.95454 1.22609 1.00411 0.92128 1.00808 1.22883 0.97070 0.96449 0.92768 1.64819 1.20170 1.10217 1.26787 1.22452 0.94244 0.93523 0.93107 0.94011 1.22462 1.00160 0.93616 0.99313 1.22362 1.00006 0.97509 0.95996 1.23090 1.01283 0.96946 0.97834 1.22410 0.96195 0.91423 0.85000 0.93331 1.86920 1.71944 1.60308 1.14252 1.23274 0.94754 0.90105 0.98717 0.91538 0.92434 0.93011 0.95578 0.92147 0.91960 0.90265 0.91696 0.91464 0.91980 0.90402 0.79433 0.90038 0.95816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.09 13.45 55.43 0.75 -27.35 16 2 C 0.02 0.55 5.34 -17.83 -0.10 0.46 16 3 Si 1.07 25.76 29.90 -169.99 -5.08 20.67 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.59 -17.17 8.40 -34.44 -0.29 -17.46 16 8 H 0.05 1.36 7.78 -52.49 -0.41 0.96 16 9 C 0.04 0.93 2.57 -89.90 -0.23 0.70 16 10 H 0.03 0.79 8.00 -51.93 -0.42 0.37 16 11 C -0.12 -2.94 5.47 -25.37 -0.14 -3.08 16 12 C 0.04 0.74 5.68 -2.76 -0.02 0.72 16 13 N -0.50 -10.01 4.50 -220.98 -1.00 -11.00 16 14 C 0.08 1.26 2.38 -66.59 -0.16 1.10 16 15 H 0.04 0.71 7.97 -51.93 -0.41 0.30 16 16 C -0.12 -1.60 5.50 -25.07 -0.14 -1.74 16 17 C -0.12 -1.31 6.91 -24.74 -0.17 -1.48 16 18 C -0.15 -1.72 6.55 -25.08 -0.16 -1.89 16 19 C 0.11 1.54 4.07 -25.61 -0.10 1.44 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 21 O -0.53 -8.30 10.03 -35.23 -0.35 -8.65 16 22 C 0.06 1.34 5.20 -1.78 -0.01 1.33 16 23 H 0.27 8.34 5.66 -40.82 -0.23 8.11 16 24 H 0.06 1.48 7.84 -51.93 -0.41 1.08 16 25 H 0.05 1.28 7.07 -51.93 -0.37 0.92 16 26 H 0.03 0.50 7.69 -51.92 -0.40 0.10 16 27 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.17 7.84 -51.93 -0.41 0.76 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.36 3.88 9.11 45.56 0.42 4.30 16 35 H 0.08 1.88 6.33 -51.93 -0.33 1.55 16 36 H 0.02 0.56 7.80 -51.93 -0.41 0.15 16 LS Contribution 277.26 15.07 4.18 4.18 Total: -1.00 -31.93 277.26 -8.14 -40.07 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.12 Total: 1.98 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -1.52 Total: -19.90 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: -0.25 Total: -38.35 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.35 Total: -8.65 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.93 -8.14 -40.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306960011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.939 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds