Wall clock time and date at job start Mon Mar 30 2020 02:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00202 * 2 1 4 4 H 1.48499 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47501 * 300.00232 * 3 2 1 6 6 H 1.48501 * 109.46969 * 60.00290 * 3 2 1 7 7 C 1.37877 * 119.99539 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99532 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00424 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47431 * 179.97438 * 9 7 2 11 11 C 1.46690 * 111.04804 * 310.62250 * 10 9 7 12 12 C 1.53912 * 104.77584 * 214.29821 * 11 10 9 13 13 H 1.09002 * 109.20614 * 283.13137 * 12 11 10 14 14 C 1.50749 * 112.99371 * 161.29984 * 12 11 10 15 15 C 1.52822 * 111.72991 * 294.89824 * 14 12 11 16 16 C 1.53328 * 108.10084 * 301.06891 * 15 14 12 17 17 H 1.09001 * 109.67750 * 304.33667 * 16 15 14 18 18 O 1.42899 * 109.67292 * 183.83311 * 16 15 14 19 19 C 1.52588 * 108.41360 * 64.10298 * 16 15 14 20 20 C 1.51816 * 111.29770 * 298.09580 * 19 16 15 21 21 H 1.08998 * 111.44315 * 285.93729 * 20 19 16 22 22 C 1.47599 * 111.00318 * 190.00093 * 10 9 7 23 23 H 0.97000 * 119.99676 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47269 * 60.00027 * 9 7 2 25 25 H 1.09003 * 109.47061 * 300.00196 * 9 7 2 26 26 H 1.09011 * 109.82717 * 95.59076 * 11 10 9 27 27 H 1.08994 * 110.49369 * 333.35156 * 11 10 9 28 28 H 1.08998 * 109.02857 * 55.48287 * 14 12 11 29 29 H 1.08999 * 109.02503 * 174.39840 * 14 12 11 30 30 H 1.09003 * 109.73657 * 60.72110 * 15 14 12 31 31 H 1.09005 * 109.73307 * 181.41656 * 15 14 12 32 32 H 0.96703 * 114.00099 * 60.00747 * 18 16 15 33 33 H 1.09007 * 109.16450 * 58.05956 * 19 16 15 34 34 H 1.09002 * 109.16283 * 177.30362 * 19 16 15 35 35 H 1.08998 * 109.96606 * 1.88879 * 22 10 9 36 36 H 1.09002 * 109.96799 * 240.62670 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2055 -3.6157 -0.0027 11 6 3.2253 -3.4361 -1.0417 12 6 3.5414 -4.8604 -1.5318 13 1 4.1796 -5.3576 -0.8013 14 6 4.2168 -4.8830 -2.8794 15 6 3.3000 -4.3518 -3.9807 16 6 2.0396 -5.2242 -4.0134 17 1 2.3199 -6.2693 -4.1455 18 8 1.1971 -4.8121 -5.0915 19 6 1.3005 -5.0532 -2.6894 20 6 2.1493 -5.5186 -1.5200 21 1 2.2087 -6.6062 -1.4786 22 6 1.5178 -4.8994 -0.2431 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5563 -0.8920 25 1 0.6239 -2.5574 0.8880 26 1 4.1140 -2.9741 -0.6114 27 1 2.8353 -2.8287 -1.8583 28 1 5.1152 -4.2674 -2.8371 29 1 4.4997 -5.9083 -3.1179 30 1 3.0271 -3.3186 -3.7659 31 1 3.8104 -4.4060 -4.9424 32 1 1.6115 -4.8800 -5.9626 33 1 1.0589 -3.9997 -2.5480 34 1 0.3769 -5.6313 -2.7180 35 1 0.4530 -4.7274 -0.4003 36 1 1.6661 -5.5660 0.6064 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307170690.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:53 Heat of formation + Delta-G solvation = -62.718493 kcal Electronic energy + Delta-G solvation = -16514.886899 eV Core-core repulsion = 13997.909493 eV Total energy + Delta-G solvation = -2516.977406 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.06945 -36.95926 -34.35434 -32.57954 -31.22293 -29.67928 -26.85292 -26.17880 -23.47348 -21.72769 -21.46056 -19.93481 -18.52342 -17.02851 -16.13633 -15.62433 -15.08383 -14.67256 -14.32141 -13.96288 -13.38073 -12.96274 -12.56574 -12.52163 -12.17882 -11.93735 -11.58302 -11.26985 -11.21660 -11.07901 -10.89837 -10.67847 -10.42419 -10.13599 -10.02117 -9.84960 -9.71523 -9.51623 -9.04437 -8.45517 -7.13106 -6.01835 -4.03054 3.31294 3.38565 3.43018 4.25303 4.44260 4.75071 4.82760 5.10506 5.15804 5.27103 5.33041 5.38778 5.39037 5.57750 5.68620 5.73772 5.90755 6.06606 6.09853 6.13795 6.22179 6.29394 6.36147 6.50137 6.51891 6.70057 6.77510 6.89446 7.29868 7.47252 7.74657 7.80626 8.06609 8.27939 8.56977 9.05067 9.61334 11.09519 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029451 B = 0.008178 C = 0.007838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.508339 B = 3423.078188 C = 3571.472049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.188 3.812 10 N -0.530 5.530 11 C 0.068 3.932 12 C -0.101 4.101 13 H 0.073 0.927 14 C -0.100 4.100 15 C -0.153 4.153 16 C 0.108 3.892 17 H 0.050 0.950 18 O -0.568 6.568 19 C -0.110 4.110 20 C -0.099 4.099 21 H 0.077 0.923 22 C 0.044 3.956 23 H 0.261 0.739 24 H -0.007 1.007 25 H 0.030 0.970 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.372 0.628 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.260 -11.207 -7.693 14.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.062 3.938 10 N -0.255 5.255 11 C -0.060 4.060 12 C -0.120 4.120 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.191 4.191 16 C 0.049 3.951 17 H 0.068 0.932 18 O -0.373 6.373 19 C -0.148 4.148 20 C -0.118 4.118 21 H 0.096 0.904 22 C -0.085 4.085 23 H 0.070 0.930 24 H 0.011 0.989 25 H 0.048 0.952 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.218 0.782 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.906 -10.962 -6.674 14.128 hybrid contribution 0.340 0.924 -1.175 1.533 sum 6.246 -10.038 -7.848 14.190 Atomic orbital electron populations 1.69972 1.06045 1.26628 1.50883 1.24992 0.94851 0.99306 0.95383 0.86476 0.80076 0.83567 0.77530 1.19685 1.21099 1.20972 1.21267 0.93477 0.90194 1.50246 0.91862 1.19928 0.90447 0.87395 0.96013 1.63472 1.14627 1.02282 1.45070 1.22456 0.96217 0.93671 0.93680 1.21549 0.95713 0.98289 0.96431 0.90867 1.20816 0.98350 1.00653 0.93978 1.22337 0.96469 1.01660 0.98615 1.21773 0.89837 0.95923 0.87530 0.93189 1.86559 1.43628 1.89779 1.17297 1.21334 0.98220 1.03581 0.91649 1.22084 0.95080 0.99185 0.95480 0.90429 1.23120 0.97438 0.92933 0.94960 0.92981 0.98949 0.95189 0.91615 0.92974 0.91638 0.92440 0.90295 0.92118 0.78165 0.90472 0.91766 0.92985 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -14.63 8.34 -34.44 -0.29 -14.92 16 8 H 0.06 1.78 6.68 -52.48 -0.35 1.42 16 9 C 0.19 5.02 4.57 -4.98 -0.02 5.00 16 10 N -0.53 -11.77 5.30 -233.53 -1.24 -13.01 16 11 C 0.07 1.35 4.24 -3.46 -0.01 1.33 16 12 C -0.10 -1.55 2.87 -90.75 -0.26 -1.81 16 13 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 14 C -0.10 -1.28 5.38 -27.95 -0.15 -1.43 16 15 C -0.15 -2.03 5.45 -26.65 -0.15 -2.17 16 16 C 0.11 1.48 3.46 -26.77 -0.09 1.39 16 17 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 18 O -0.57 -8.05 13.34 -35.23 -0.47 -8.52 16 19 C -0.11 -1.79 4.26 -27.54 -0.12 -1.91 16 20 C -0.10 -1.52 3.53 -89.47 -0.32 -1.83 16 21 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 22 C 0.04 0.81 6.15 -2.21 -0.01 0.80 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 24 H -0.01 -0.21 7.37 -51.93 -0.38 -0.59 16 25 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.07 1.34 7.70 -51.92 -0.40 0.94 16 27 H 0.05 1.14 5.53 -51.93 -0.29 0.85 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.26 6.79 -51.93 -0.35 0.91 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.37 3.42 9.09 45.56 0.41 3.84 16 33 H 0.08 1.55 6.53 -51.93 -0.34 1.21 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.01 7.10 -51.93 -0.37 0.64 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 274.86 15.07 4.14 4.14 Total: -1.00 -31.34 274.86 -8.37 -39.71 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.01 Total: 1.15 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -1.52 Total: -14.02 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: -0.50 Total: -39.36 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.47 Total: -8.52 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.34 -8.37 -39.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307170690.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.009 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds