Wall clock time and date at job start Mon Mar 30 2020 02:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00202 * 2 1 4 4 H 1.48499 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47501 * 300.00232 * 3 2 1 6 6 H 1.48501 * 109.46969 * 60.00290 * 3 2 1 7 7 C 1.37877 * 119.99539 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99532 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00424 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47431 * 179.97438 * 9 7 2 11 11 C 1.46690 * 111.04804 * 310.62250 * 10 9 7 12 12 C 1.53912 * 104.77584 * 214.29821 * 11 10 9 13 13 H 1.09002 * 109.20614 * 283.13137 * 12 11 10 14 14 C 1.50749 * 112.99371 * 161.29984 * 12 11 10 15 15 C 1.52822 * 111.72991 * 294.89824 * 14 12 11 16 16 C 1.53328 * 108.10084 * 301.06891 * 15 14 12 17 17 H 1.09001 * 109.67750 * 304.33667 * 16 15 14 18 18 O 1.42899 * 109.67292 * 183.83311 * 16 15 14 19 19 C 1.52588 * 108.41360 * 64.10298 * 16 15 14 20 20 C 1.51816 * 111.29770 * 298.09580 * 19 16 15 21 21 H 1.08998 * 111.44315 * 285.93729 * 20 19 16 22 22 C 1.47599 * 111.00318 * 190.00093 * 10 9 7 23 23 H 0.97000 * 119.99676 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47269 * 60.00027 * 9 7 2 25 25 H 1.09003 * 109.47061 * 300.00196 * 9 7 2 26 26 H 1.09011 * 109.82717 * 95.59076 * 11 10 9 27 27 H 1.08994 * 110.49369 * 333.35156 * 11 10 9 28 28 H 1.08998 * 109.02857 * 55.48287 * 14 12 11 29 29 H 1.08999 * 109.02503 * 174.39840 * 14 12 11 30 30 H 1.09003 * 109.73657 * 60.72110 * 15 14 12 31 31 H 1.09005 * 109.73307 * 181.41656 * 15 14 12 32 32 H 0.96703 * 114.00099 * 60.00747 * 18 16 15 33 33 H 1.09007 * 109.16450 * 58.05956 * 19 16 15 34 34 H 1.09002 * 109.16283 * 177.30362 * 19 16 15 35 35 H 1.08998 * 109.96606 * 1.88879 * 22 10 9 36 36 H 1.09002 * 109.96799 * 240.62670 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2055 -3.6157 -0.0027 11 6 3.2253 -3.4361 -1.0417 12 6 3.5414 -4.8604 -1.5318 13 1 4.1796 -5.3576 -0.8013 14 6 4.2168 -4.8830 -2.8794 15 6 3.3000 -4.3518 -3.9807 16 6 2.0396 -5.2242 -4.0134 17 1 2.3199 -6.2693 -4.1455 18 8 1.1971 -4.8121 -5.0915 19 6 1.3005 -5.0532 -2.6894 20 6 2.1493 -5.5186 -1.5200 21 1 2.2087 -6.6062 -1.4786 22 6 1.5178 -4.8994 -0.2431 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5563 -0.8920 25 1 0.6239 -2.5574 0.8880 26 1 4.1140 -2.9741 -0.6114 27 1 2.8353 -2.8287 -1.8583 28 1 5.1152 -4.2674 -2.8371 29 1 4.4997 -5.9083 -3.1179 30 1 3.0271 -3.3186 -3.7659 31 1 3.8104 -4.4060 -4.9424 32 1 1.6115 -4.8800 -5.9626 33 1 1.0589 -3.9997 -2.5480 34 1 0.3769 -5.6313 -2.7180 35 1 0.4530 -4.7274 -0.4003 36 1 1.6661 -5.5660 0.6064 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307170690.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:52 Heat of formation + Delta-G solvation = -87.112495 kcal Electronic energy + Delta-G solvation = -16515.944702 eV Core-core repulsion = 13997.909493 eV Total energy + Delta-G solvation = -2518.035209 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.42422 -38.23252 -35.90182 -34.52110 -32.60493 -31.18245 -28.55088 -27.85631 -25.21382 -22.99931 -22.91157 -21.57971 -19.87505 -18.35318 -18.00630 -16.98505 -16.88794 -16.17263 -15.67007 -15.46756 -14.73746 -14.55085 -14.32241 -13.90048 -13.84117 -13.39737 -13.02233 -12.96347 -12.69312 -12.63466 -12.53663 -12.33572 -12.19196 -11.69092 -11.39602 -11.20630 -11.17973 -11.06521 -10.69727 -10.61233 -8.97475 -8.26331 -6.36795 1.35880 1.37009 1.50597 2.35920 3.06770 3.19315 3.40270 3.57139 3.75487 4.02262 4.06147 4.12472 4.19256 4.43150 4.50475 4.54329 4.62859 4.73557 4.81028 4.85016 4.98703 5.00282 5.04817 5.15584 5.20999 5.24538 5.30578 5.39721 5.44582 5.55129 5.61172 5.95216 6.31154 6.59145 6.81426 6.94373 7.33440 8.86213 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029451 B = 0.008178 C = 0.007838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.508339 B = 3423.078188 C = 3571.472049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.065 0.935 9 C 0.207 3.793 10 N -0.540 5.540 11 C 0.066 3.934 12 C -0.089 4.089 13 H 0.092 0.908 14 C -0.096 4.096 15 C -0.151 4.151 16 C 0.112 3.888 17 H 0.087 0.913 18 O -0.593 6.593 19 C -0.110 4.110 20 C -0.084 4.084 21 H 0.121 0.879 22 C 0.036 3.964 23 H 0.265 0.735 24 H -0.042 1.042 25 H -0.003 1.003 26 H 0.057 0.943 27 H 0.022 0.978 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.036 0.964 31 H 0.092 0.908 32 H 0.394 0.606 33 H 0.021 0.979 34 H 0.063 0.937 35 H 0.030 0.970 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.651 -12.784 -8.749 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.083 0.917 9 C 0.081 3.919 10 N -0.264 5.264 11 C -0.062 4.062 12 C -0.108 4.108 13 H 0.110 0.890 14 C -0.134 4.134 15 C -0.189 4.189 16 C 0.054 3.946 17 H 0.104 0.896 18 O -0.401 6.401 19 C -0.148 4.148 20 C -0.103 4.103 21 H 0.139 0.861 22 C -0.092 4.092 23 H 0.074 0.926 24 H -0.025 1.025 25 H 0.015 0.985 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.055 0.945 31 H 0.111 0.889 32 H 0.244 0.756 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.315 -12.561 -7.745 16.938 hybrid contribution -0.472 1.389 -0.845 1.693 sum 7.843 -11.171 -8.590 16.127 Atomic orbital electron populations 1.70112 1.07870 1.27896 1.51588 1.25994 0.95799 1.03477 0.94623 0.85307 0.79013 0.78309 0.77869 1.18476 1.20340 1.20072 1.21567 0.93652 0.91234 1.50358 0.91718 1.19501 0.90471 0.89256 0.92702 1.63373 1.14215 1.02278 1.46557 1.22438 0.94713 0.96909 0.92092 1.21539 0.96122 0.94417 0.98685 0.89009 1.20839 0.97830 1.03054 0.91683 1.22318 0.96794 0.99181 1.00584 1.21768 0.89141 0.97822 0.85904 0.89552 1.86510 1.44720 1.90084 1.18811 1.21305 0.99163 1.00015 0.94301 1.22084 0.94282 1.01236 0.92702 0.86132 1.23253 0.96282 0.91705 0.97959 0.92647 1.02468 0.98524 0.92471 0.95994 0.90961 0.88582 0.94476 0.88914 0.75612 0.95979 0.91831 0.95179 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.81 13.29 21.45 0.28 -58.52 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 45.81 29.54 68.60 2.03 47.84 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.53 -31.57 8.34 25.60 0.21 -31.36 16 8 H 0.06 3.75 6.68 -2.91 -0.02 3.73 16 9 C 0.21 11.89 4.57 85.56 0.39 12.28 16 10 N -0.54 -24.93 5.30 -892.76 -4.73 -29.66 16 11 C 0.07 2.70 4.24 86.65 0.37 3.06 16 12 C -0.09 -2.51 2.87 -10.88 -0.03 -2.54 16 13 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 14 C -0.10 -2.10 5.38 29.80 0.16 -1.93 16 15 C -0.15 -3.67 5.45 30.64 0.17 -3.50 16 16 C 0.11 2.82 3.46 30.57 0.11 2.92 16 17 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 18 O -0.59 -16.01 13.34 -148.98 -1.99 -18.00 16 19 C -0.11 -3.56 4.26 30.07 0.13 -3.43 16 20 C -0.08 -2.41 3.53 -10.05 -0.04 -2.45 16 21 H 0.12 2.56 8.14 -2.39 -0.02 2.55 16 22 C 0.04 1.35 6.15 86.97 0.53 1.88 16 23 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 24 H -0.04 -2.66 7.37 -2.39 -0.02 -2.68 16 25 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.06 2.36 7.70 -2.38 -0.02 2.34 16 27 H 0.02 1.02 5.53 -2.39 -0.01 1.00 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.04 1.21 6.79 -2.39 -0.02 1.19 16 31 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.39 6.33 9.09 -74.06 -0.67 5.66 16 33 H 0.02 0.93 6.53 -2.38 -0.02 0.92 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.03 1.24 7.10 -2.39 -0.02 1.22 16 36 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -72.61 274.86 -1.56 -74.17 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.39 Total: 8.83 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 2.46 Total: -24.65 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -4.44 Total: -88.18 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.99 Total: -18.00 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -72.61 -1.56 -74.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307170690.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.942 kcal (2) G-P(sol) polarization free energy of solvation -72.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds