Wall clock time and date at job start Mon Mar 30 2020 02:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99552 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99969 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 C 1.52996 * 109.46681 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.84436 * 305.69533 * 11 10 9 13 13 C 1.54541 * 109.84414 * 184.76993 * 11 10 9 14 14 C 1.56078 * 101.98917 * 218.64207 * 13 11 10 15 15 H 1.09002 * 112.96501 * 155.27805 * 14 13 11 16 16 C 1.53001 * 106.57807 * 279.41381 * 14 13 11 17 17 C 1.52699 * 110.65760 * 162.55304 * 16 14 13 18 18 C 1.53237 * 108.69218 * 298.05955 * 17 16 14 19 19 C 1.52877 * 108.45158 * 63.11859 * 18 17 16 20 20 C 1.51738 * 111.83952 * 301.16904 * 19 18 17 21 21 H 1.09000 * 109.33299 * 172.87528 * 20 19 18 22 22 O 1.42926 * 112.59828 * 292.64016 * 20 19 18 23 23 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 25 25 H 1.09006 * 109.46810 * 299.99903 * 10 9 7 26 26 H 1.08997 * 109.47198 * 60.00005 * 10 9 7 27 27 H 1.09001 * 110.92754 * 336.81582 * 13 11 10 28 28 H 1.09003 * 110.92447 * 100.43451 * 13 11 10 29 29 H 1.08996 * 109.24060 * 282.85794 * 16 14 13 30 30 H 1.09003 * 109.23720 * 42.29565 * 16 14 13 31 31 H 1.08997 * 109.59624 * 57.82448 * 17 16 14 32 32 H 1.08999 * 109.59564 * 178.29758 * 17 16 14 33 33 H 1.08995 * 109.63935 * 182.80358 * 18 17 16 34 34 H 1.08997 * 109.64024 * 303.22360 * 18 17 16 35 35 H 1.09008 * 109.12704 * 61.23194 * 19 18 17 36 36 H 1.09002 * 109.13031 * 180.39093 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 6 1.0640 -4.8196 0.0190 12 1 0.3685 -4.7079 0.8508 13 6 1.8241 -6.1591 0.1470 14 6 1.0087 -7.0870 -0.8070 15 1 1.5945 -7.9221 -1.1912 16 6 -0.2229 -7.5449 -0.0232 17 6 -1.2908 -8.0907 -0.9685 18 6 -1.7311 -6.9672 -1.9130 19 6 -0.5293 -6.5481 -2.7598 20 6 0.6278 -6.0723 -1.9012 21 1 1.5006 -5.9051 -2.5324 22 8 0.3402 -4.8484 -1.2213 23 1 -0.4850 0.8400 -0.0004 24 1 0.3556 -2.3880 0.0068 25 1 2.6849 -3.7191 -0.8762 26 1 2.6848 -3.7097 0.9038 27 1 2.8537 -6.0567 -0.1956 28 1 1.7917 -6.5286 1.1720 29 1 0.0682 -8.3260 0.6791 30 1 -0.6318 -6.6991 0.5295 31 1 -0.8781 -8.9157 -1.5489 32 1 -2.1468 -8.4392 -0.3907 33 1 -2.5294 -7.3264 -2.5624 34 1 -2.0870 -6.1174 -1.3306 35 1 -0.1941 -7.4006 -3.3507 36 1 -0.8288 -5.7437 -3.4316 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307322287.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:55 Heat of formation + Delta-G solvation = -76.175461 kcal Electronic energy + Delta-G solvation = -16125.038850 eV Core-core repulsion = 13607.477906 eV Total energy + Delta-G solvation = -2517.560944 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.42087 -37.32089 -36.00708 -33.90095 -32.98759 -30.87562 -29.97985 -26.80053 -24.57272 -23.67398 -22.40986 -21.94902 -20.34878 -19.20986 -17.45521 -16.75637 -16.66114 -16.03875 -15.78711 -15.17117 -15.10827 -14.63155 -14.34257 -13.99140 -13.39323 -13.22662 -12.99239 -12.80035 -12.75677 -12.72423 -12.44738 -12.33914 -12.09244 -11.93271 -11.56723 -11.43751 -11.03869 -11.02603 -10.87223 -10.23662 -9.02811 -7.96149 -5.26287 1.44628 1.47255 1.57348 2.54081 2.92005 3.36750 3.47694 3.71232 3.78713 3.98738 4.10237 4.20525 4.25819 4.34991 4.38247 4.52838 4.57699 4.66751 4.69374 4.78065 4.87537 4.90841 4.99168 5.02101 5.11004 5.26104 5.29492 5.32874 5.37207 5.41094 5.44399 5.59776 6.23623 6.32668 7.30465 8.06982 8.31161 9.28110 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.048960 B = 0.006048 C = 0.005747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.762398 B = 4628.303922 C = 4871.085831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.980 3.020 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.076 0.924 9 N -0.743 5.743 10 C 0.143 3.857 11 C 0.079 3.921 12 H 0.063 0.937 13 C -0.138 4.138 14 C -0.104 4.104 15 H 0.124 0.876 16 C -0.113 4.113 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.111 4.111 20 C 0.071 3.929 21 H 0.046 0.954 22 O -0.391 6.391 23 H 0.252 0.748 24 H 0.373 0.627 25 H 0.015 0.985 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.099 0.901 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.924 -20.121 -2.109 20.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.094 0.906 9 N -0.385 5.385 10 C 0.016 3.984 11 C 0.021 3.979 12 H 0.081 0.919 13 C -0.176 4.176 14 C -0.122 4.122 15 H 0.142 0.858 16 C -0.150 4.150 17 C -0.150 4.150 18 C -0.156 4.156 19 C -0.149 4.149 20 C 0.014 3.986 21 H 0.064 0.936 22 O -0.311 6.311 23 H 0.060 0.940 24 H 0.204 0.796 25 H 0.032 0.968 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.117 0.883 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.972 -19.862 -2.179 20.005 hybrid contribution 0.032 1.437 0.048 1.439 sum 1.004 -18.424 -2.131 18.574 Atomic orbital electron populations 1.69867 1.06873 1.26075 1.59462 1.25681 0.96469 1.01438 1.03538 0.84978 0.78151 0.79227 0.76801 1.18839 1.21931 1.21636 1.19735 0.91515 0.85456 1.41404 0.90579 1.42535 1.05622 1.01187 1.89182 1.21238 0.93959 0.85479 0.97738 1.22923 0.92983 0.95381 0.86607 0.91898 1.23382 0.99678 0.92376 1.02194 1.22865 0.97156 0.97741 0.94434 0.85833 1.21531 0.94824 1.00578 0.98114 1.21512 0.98439 0.97578 0.97492 1.21507 0.97273 0.98408 0.98395 1.21293 0.94892 1.01094 0.97576 1.22525 0.97467 0.84238 0.94406 0.93566 1.88560 1.69307 1.39356 1.33882 0.93958 0.79585 0.96750 0.94616 0.89865 0.88206 0.89786 0.93952 0.89965 0.91159 0.90521 0.94290 0.88265 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.28 13.06 21.65 0.28 -62.99 16 2 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 3 Si 0.98 48.20 29.55 68.60 2.03 50.23 16 4 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.25 -14.98 9.99 84.03 0.84 -14.14 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.74 -41.92 5.58 -343.44 -1.92 -43.83 16 10 C 0.14 6.30 5.81 86.38 0.50 6.80 16 11 C 0.08 2.86 2.81 31.12 0.09 2.95 16 12 H 0.06 2.42 7.88 -2.39 -0.02 2.40 16 13 C -0.14 -3.43 5.90 32.19 0.19 -3.24 16 14 C -0.10 -2.20 3.68 -9.38 -0.03 -2.24 16 15 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 16 C -0.11 -2.25 4.93 30.49 0.15 -2.10 16 17 C -0.11 -1.98 5.92 30.57 0.18 -1.80 16 18 C -0.12 -2.65 5.96 30.63 0.18 -2.47 16 19 C -0.11 -2.67 5.60 30.14 0.17 -2.50 16 20 C 0.07 2.02 3.16 30.52 0.10 2.11 16 21 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 22 O -0.39 -15.43 10.70 -148.98 -1.59 -17.03 16 23 H 0.25 15.68 8.31 -92.71 -0.77 14.91 16 24 H 0.37 22.75 7.67 -92.71 -0.71 22.04 16 25 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 27 H 0.08 1.95 7.86 -2.39 -0.02 1.93 16 28 H 0.10 2.07 7.95 -2.39 -0.02 2.05 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.04 1.08 7.03 -2.39 -0.02 1.06 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -71.77 283.56 1.96 -69.81 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.33 Total: 24.81 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 2.83 Total: -21.00 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -1.63 Total: -106.83 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -1.59 Total: -17.03 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Total: -71.77 1.96 -69.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307322287.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.364 kcal (2) G-P(sol) polarization free energy of solvation -71.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds