Wall clock time and date at job start Mon Mar 30 2020 03:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99832 * 2 1 4 4 H 1.48504 * 109.47159 * 270.00191 * 3 2 1 5 5 H 1.48502 * 109.46990 * 30.00066 * 3 2 1 6 6 H 1.48498 * 109.46895 * 150.00013 * 3 2 1 7 7 C 1.37879 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99979 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47024 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47434 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47434 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47029 * 180.02562 * 12 11 10 14 14 C 1.46801 * 110.99762 * 170.00019 * 13 12 11 15 15 C 1.53026 * 109.89378 * 189.45097 * 14 13 12 16 16 C 1.53379 * 109.13098 * 297.14194 * 15 14 13 17 17 C 1.51422 * 108.12007 * 52.46589 * 16 15 14 18 18 O 1.20763 * 121.00488 * 130.87457 * 17 16 15 19 19 C 1.46662 * 111.05458 * 294.31941 * 13 12 11 20 20 H 0.96998 * 120.00013 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47415 * 60.00281 * 9 7 2 22 22 H 1.09003 * 109.47351 * 299.99747 * 9 7 2 23 23 H 1.08998 * 109.47507 * 60.00006 * 10 9 7 24 24 H 1.09004 * 109.46997 * 299.99544 * 10 9 7 25 25 H 1.08998 * 109.46797 * 59.99536 * 11 10 9 26 26 H 1.09004 * 109.46628 * 299.99735 * 11 10 9 27 27 H 1.08998 * 109.47507 * 59.99971 * 12 11 10 28 28 H 1.09004 * 109.46997 * 299.99509 * 12 11 10 29 29 H 1.08993 * 109.40255 * 69.32325 * 14 13 12 30 30 H 1.08999 * 109.33061 * 309.53524 * 14 13 12 31 31 H 1.08999 * 109.52662 * 177.24402 * 15 14 13 32 32 H 1.09004 * 109.52648 * 57.03780 * 15 14 13 33 33 H 1.08995 * 109.73619 * 292.80805 * 16 15 14 34 34 H 1.09001 * 109.77020 * 172.13904 * 16 15 14 35 35 H 1.09004 * 109.56875 * 60.06948 * 19 13 12 36 36 H 1.09004 * 109.45836 * 299.64175 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4748 -6.1500 -0.0018 13 7 1.7403 -7.4221 -0.0031 14 6 2.6462 -8.5524 -0.2417 15 6 1.8357 -9.8298 -0.4717 16 6 1.0363 -10.1532 0.7967 17 6 0.2517 -8.9182 1.1865 18 8 -0.9274 -8.9843 1.4389 19 6 0.9883 -7.5976 1.2438 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 2.8721 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8906 25 1 0.8541 -5.0445 -0.8914 26 1 0.8536 -5.0451 0.8887 27 1 3.1015 -6.0927 0.8881 28 1 3.1013 -6.0918 -0.8919 29 1 3.2944 -8.6859 0.6243 30 1 3.2555 -8.3468 -1.1218 31 1 2.5118 -10.6547 -0.6966 32 1 1.1505 -9.6812 -1.3063 33 1 1.7183 -10.4253 1.6022 34 1 0.3510 -10.9778 0.6004 35 1 0.2722 -6.7835 1.3560 36 1 1.6790 -7.6001 2.0871 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385834075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:46 Heat of formation + Delta-G solvation = -59.306817 kcal Electronic energy + Delta-G solvation = -15201.373161 eV Core-core repulsion = 12684.543696 eV Total energy + Delta-G solvation = -2516.829465 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.09202 -37.74413 -34.98850 -33.28248 -31.79896 -29.40691 -28.48735 -25.56005 -23.74183 -22.31402 -21.10476 -19.96819 -19.29803 -16.41687 -16.21240 -16.01246 -15.26788 -15.03093 -14.75996 -14.45808 -14.26020 -13.76748 -13.15126 -12.71530 -12.53342 -12.32806 -11.97969 -11.70728 -11.45931 -11.23399 -11.13523 -10.95435 -10.51114 -10.47817 -10.37752 -9.69146 -9.58747 -9.24143 -8.99397 -8.46251 -8.31186 -5.96183 -3.98654 1.76642 3.33721 3.39806 3.42965 3.74304 3.94242 4.48700 4.50664 4.59221 4.71427 5.05446 5.14010 5.23715 5.28542 5.34588 5.39348 5.47636 5.50125 5.68247 5.82531 5.84863 5.91294 6.10495 6.19070 6.48886 6.76713 6.89804 6.93520 6.99174 7.21388 7.33469 7.72508 7.88166 8.04776 8.47161 9.08950 9.65202 11.15146 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.056306 B = 0.004278 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.163676 B = 6544.117922 C = 6899.356288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.117 4.117 12 C 0.058 3.942 13 N -0.532 5.532 14 C 0.046 3.954 15 C -0.110 4.110 16 C -0.172 4.172 17 C 0.370 3.630 18 O -0.453 6.453 19 C 0.003 3.997 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.014 0.986 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 -19.577 0.777 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.155 4.155 12 C -0.069 4.069 13 N -0.259 5.259 14 C -0.082 4.082 15 C -0.148 4.148 16 C -0.210 4.210 17 C 0.244 3.756 18 O -0.324 6.324 19 C -0.125 4.125 20 H 0.070 0.930 21 H 0.034 0.966 22 H 0.033 0.967 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.898 -19.489 0.539 20.102 hybrid contribution 1.124 0.975 0.682 1.637 sum 6.022 -18.514 1.221 19.507 Atomic orbital electron populations 1.69971 1.06052 1.26532 1.50947 1.25036 0.94832 0.99224 0.95420 0.86614 0.79830 0.83587 0.78077 1.20678 1.21246 1.19925 1.21282 0.92991 0.91212 1.50419 0.92778 1.19092 0.94032 0.91325 0.97213 1.21595 0.99093 0.93912 1.00082 1.21710 0.97911 0.93619 1.02252 1.22300 0.95912 0.87784 1.00921 1.61927 1.27970 1.02981 1.32992 1.22187 0.94122 0.90572 1.01299 1.21576 0.99093 0.97186 0.96979 1.22395 1.00892 0.97723 0.99973 1.24836 0.88266 0.91936 0.70583 1.90421 1.17355 1.88357 1.36283 1.22869 0.99334 0.97772 0.92547 0.93035 0.96570 0.96724 0.93652 0.93395 0.91498 0.92539 0.94686 0.90392 0.94400 0.89814 0.90274 0.90383 0.88658 0.89254 0.87360 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 11 C -0.12 -1.98 5.13 -26.73 -0.14 -2.11 16 12 C 0.06 0.76 4.96 -3.83 -0.02 0.74 16 13 N -0.53 -6.41 4.65 -235.96 -1.10 -7.51 16 14 C 0.05 0.41 5.37 -3.86 -0.02 0.39 16 15 C -0.11 -0.84 6.13 -26.52 -0.16 -1.00 16 16 C -0.17 -1.42 6.24 -27.33 -0.17 -1.59 16 17 C 0.37 4.45 6.88 -28.38 -0.20 4.25 16 18 O -0.45 -7.10 17.90 6.00 0.11 -6.99 16 19 C 0.00 0.04 5.39 -4.80 -0.03 0.01 16 20 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.06 0.97 6.55 -51.93 -0.34 0.63 16 27 H 0.03 0.44 8.13 -51.93 -0.42 0.02 16 28 H 0.08 0.98 7.93 -51.93 -0.41 0.57 16 29 H 0.04 0.30 8.13 -51.93 -0.42 -0.12 16 30 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.11 1.49 6.47 -51.93 -0.34 1.15 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 294.11 15.07 4.43 4.43 Total: -1.00 -32.11 294.11 -8.37 -40.49 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -6.11 Total: -5.55 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -1.42 Total: -15.03 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: -0.36 Total: -34.20 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: 0.11 Total: -6.99 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.11 -8.37 -40.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385834075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.821 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds