Wall clock time and date at job start Mon Mar 30 2020 03:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99832 * 2 1 4 4 H 1.48504 * 109.47159 * 270.00191 * 3 2 1 5 5 H 1.48502 * 109.46990 * 30.00066 * 3 2 1 6 6 H 1.48498 * 109.46895 * 150.00013 * 3 2 1 7 7 C 1.37879 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99979 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47024 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47434 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47434 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47029 * 180.02562 * 12 11 10 14 14 C 1.46801 * 110.99762 * 170.00019 * 13 12 11 15 15 C 1.53026 * 109.89378 * 189.45097 * 14 13 12 16 16 C 1.53379 * 109.13098 * 297.14194 * 15 14 13 17 17 C 1.51422 * 108.12007 * 52.46589 * 16 15 14 18 18 O 1.20763 * 121.00488 * 130.87457 * 17 16 15 19 19 C 1.46662 * 111.05458 * 294.31941 * 13 12 11 20 20 H 0.96998 * 120.00013 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47415 * 60.00281 * 9 7 2 22 22 H 1.09003 * 109.47351 * 299.99747 * 9 7 2 23 23 H 1.08998 * 109.47507 * 60.00006 * 10 9 7 24 24 H 1.09004 * 109.46997 * 299.99544 * 10 9 7 25 25 H 1.08998 * 109.46797 * 59.99536 * 11 10 9 26 26 H 1.09004 * 109.46628 * 299.99735 * 11 10 9 27 27 H 1.08998 * 109.47507 * 59.99971 * 12 11 10 28 28 H 1.09004 * 109.46997 * 299.99509 * 12 11 10 29 29 H 1.08993 * 109.40255 * 69.32325 * 14 13 12 30 30 H 1.08999 * 109.33061 * 309.53524 * 14 13 12 31 31 H 1.08999 * 109.52662 * 177.24402 * 15 14 13 32 32 H 1.09004 * 109.52648 * 57.03780 * 15 14 13 33 33 H 1.08995 * 109.73619 * 292.80805 * 16 15 14 34 34 H 1.09001 * 109.77020 * 172.13904 * 16 15 14 35 35 H 1.09004 * 109.56875 * 60.06948 * 19 13 12 36 36 H 1.09004 * 109.45836 * 299.64175 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4748 -6.1500 -0.0018 13 7 1.7403 -7.4221 -0.0031 14 6 2.6462 -8.5524 -0.2417 15 6 1.8357 -9.8298 -0.4717 16 6 1.0363 -10.1532 0.7967 17 6 0.2517 -8.9182 1.1865 18 8 -0.9274 -8.9843 1.4389 19 6 0.9883 -7.5976 1.2438 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 2.8721 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8906 25 1 0.8541 -5.0445 -0.8914 26 1 0.8536 -5.0451 0.8887 27 1 3.1015 -6.0927 0.8881 28 1 3.1013 -6.0918 -0.8919 29 1 3.2944 -8.6859 0.6243 30 1 3.2555 -8.3468 -1.1218 31 1 2.5118 -10.6547 -0.6966 32 1 1.1505 -9.6812 -1.3063 33 1 1.7183 -10.4253 1.6022 34 1 0.3510 -10.9778 0.6004 35 1 0.2722 -6.7835 1.3560 36 1 1.6790 -7.6001 2.0871 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385834075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:46 Heat of formation + Delta-G solvation = -80.279973 kcal Electronic energy + Delta-G solvation = -15202.282625 eV Core-core repulsion = 12684.543696 eV Total energy + Delta-G solvation = -2517.738929 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.02946 -38.76752 -36.50989 -34.83489 -33.34664 -30.40819 -29.98223 -27.00407 -25.13661 -23.26289 -22.48550 -21.58527 -20.11982 -18.42468 -17.35860 -17.02288 -16.50316 -16.15638 -15.97140 -15.86952 -15.42737 -14.78261 -14.44317 -14.00979 -13.91230 -13.57446 -13.38302 -13.12489 -12.88012 -12.67291 -12.31645 -12.23615 -11.95315 -11.87776 -11.80956 -11.33676 -11.28247 -11.03069 -10.55817 -10.51769 -9.34741 -8.19553 -6.31555 0.83369 1.39912 1.41910 1.52987 2.41203 2.84676 3.09868 3.13290 3.73019 3.85393 4.03276 4.16538 4.19228 4.29943 4.44572 4.53645 4.55567 4.66930 4.69562 4.81443 4.89025 4.92374 4.98454 5.15107 5.21377 5.27890 5.30933 5.37280 5.55751 5.77310 5.87177 5.93194 6.10995 6.25661 6.41650 6.86695 7.38169 8.92505 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.056306 B = 0.004278 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.163676 B = 6544.117922 C = 6899.356288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.109 4.109 12 C 0.069 3.931 13 N -0.547 5.547 14 C 0.043 3.957 15 C -0.105 4.105 16 C -0.164 4.164 17 C 0.369 3.631 18 O -0.501 6.501 19 C 0.000 4.000 20 H 0.263 0.737 21 H -0.013 1.013 22 H -0.014 1.014 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.708 -20.661 0.700 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.081 0.919 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.147 4.147 12 C -0.058 4.058 13 N -0.274 5.274 14 C -0.084 4.084 15 C -0.142 4.142 16 C -0.201 4.201 17 C 0.247 3.753 18 O -0.376 6.376 19 C -0.128 4.128 20 H 0.072 0.928 21 H 0.005 0.995 22 H 0.004 0.996 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.131 0.869 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.611 -20.595 0.454 21.961 hybrid contribution 0.258 1.299 0.701 1.498 sum 7.868 -19.296 1.155 20.871 Atomic orbital electron populations 1.70121 1.07995 1.27760 1.51843 1.26056 0.95765 1.03613 0.94731 0.85410 0.78673 0.78185 0.78552 1.19676 1.20856 1.18460 1.21755 0.93660 0.92396 1.50346 0.91880 1.19041 0.94611 0.93620 0.94391 1.21386 0.97866 0.93267 1.00785 1.21545 0.98266 0.93841 1.01068 1.22081 0.94675 0.86906 1.02130 1.61852 1.29011 1.03619 1.32947 1.22344 0.93974 0.89572 1.02536 1.21597 0.99105 0.97698 0.95838 1.22422 1.00965 0.95507 1.01216 1.25400 0.87728 0.93350 0.68826 1.90409 1.19388 1.89064 1.38720 1.22840 0.99283 0.97141 0.93562 0.92827 0.99491 0.99601 0.92816 0.92550 0.93080 0.93523 0.93458 0.89098 0.92553 0.88757 0.86921 0.91869 0.85755 0.88794 0.90299 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.75 13.29 21.45 0.28 -58.47 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 3 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.09 -3.88 5.15 30.59 0.16 -3.72 16 11 C -0.11 -3.73 5.13 30.59 0.16 -3.57 16 12 C 0.07 1.71 4.96 86.30 0.43 2.13 16 13 N -0.55 -12.30 4.65 -900.45 -4.19 -16.48 16 14 C 0.04 0.61 5.37 86.33 0.46 1.08 16 15 C -0.10 -1.24 6.13 30.73 0.19 -1.05 16 16 C -0.16 -2.25 6.24 30.20 0.19 -2.06 16 17 C 0.37 8.66 6.88 29.53 0.20 8.86 16 18 O -0.50 -16.14 17.90 -1.46 -0.03 -16.17 16 19 C 0.00 0.00 5.39 85.80 0.46 0.46 16 20 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 21 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 22 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 23 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.05 1.66 6.55 -2.39 -0.02 1.65 16 27 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 28 H 0.09 2.03 7.93 -2.39 -0.02 2.02 16 29 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 30 H 0.09 1.19 7.93 -2.39 -0.02 1.18 16 31 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 2.29 6.47 -2.38 -0.02 2.27 16 36 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -71.67 294.11 2.22 -69.46 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: 1.03 Total: 2.59 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 3.09 Total: -27.78 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -3.90 Total: -74.95 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.03 Total: -16.17 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -71.67 2.22 -69.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385834075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.825 kcal (2) G-P(sol) polarization free energy of solvation -71.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds