Wall clock time and date at job start Mon Mar 30 2020 03:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99956 * 2 1 4 4 H 1.48500 * 109.47376 * 270.00141 * 3 2 1 5 5 H 1.48506 * 109.46913 * 30.00386 * 3 2 1 6 6 H 1.48495 * 109.47075 * 149.99968 * 3 2 1 7 7 C 1.37873 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99746 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00027 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47034 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47307 * 180.02562 * 10 9 7 12 12 C 1.47173 * 110.99783 * 292.42709 * 11 10 9 13 13 C 1.52678 * 108.48131 * 171.14867 * 12 11 10 14 14 C 1.53051 * 110.68719 * 61.40374 * 13 12 11 15 15 H 1.09006 * 112.59630 * 76.85806 * 14 13 12 16 16 C 1.55783 * 106.46267 * 201.19566 * 14 13 12 17 17 O 1.44025 * 104.80667 * 77.28040 * 16 14 13 18 18 C 1.43609 * 109.77117 * 25.21945 * 17 16 14 19 19 C 1.53461 * 106.93581 * 358.40195 * 18 17 16 20 20 H 1.09001 * 108.83845 * 93.20905 * 19 18 17 21 21 C 1.46657 * 111.00082 * 169.99632 * 11 10 9 22 22 H 0.97007 * 120.00092 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47441 * 60.00111 * 9 7 2 24 24 H 1.08994 * 109.47418 * 300.00059 * 9 7 2 25 25 H 1.08993 * 109.47241 * 60.00209 * 10 9 7 26 26 H 1.09003 * 109.46678 * 299.99799 * 10 9 7 27 27 H 1.09000 * 109.62982 * 290.84186 * 12 11 10 28 28 H 1.08994 * 109.63461 * 51.45325 * 12 11 10 29 29 H 1.08992 * 109.23611 * 181.72096 * 13 12 11 30 30 H 1.09000 * 109.23331 * 301.09599 * 13 12 11 31 31 H 1.08999 * 110.37108 * 196.28080 * 16 14 13 32 32 H 1.09000 * 110.36173 * 318.59673 * 16 14 13 33 33 H 1.09001 * 109.97122 * 239.02901 * 18 17 16 34 34 H 1.08999 * 109.96322 * 117.77037 * 18 17 16 35 35 H 1.09002 * 109.03734 * 304.52524 * 21 11 10 36 36 H 1.09000 * 109.03244 * 63.45837 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 7 5.4906 -2.6364 -0.0022 12 6 6.0180 -2.1112 -1.2719 13 6 7.5272 -1.9286 -1.1304 14 6 8.2098 -3.2688 -0.8465 15 1 8.3015 -3.8892 -1.7381 16 6 9.5842 -2.9347 -0.1937 17 8 9.2702 -2.5893 1.1688 18 6 8.0392 -3.2180 1.5581 19 6 7.5228 -3.9859 0.3338 20 1 7.8806 -5.0142 0.3867 21 6 6.0162 -3.9850 0.2345 22 1 -0.4850 0.8401 -0.0004 23 1 3.8753 -0.6803 0.8889 24 1 3.8745 -0.6799 -0.8911 25 1 3.6580 -3.1497 -0.8924 26 1 3.6586 -3.1508 0.8876 27 1 5.8082 -2.8171 -2.0755 28 1 5.5520 -1.1510 -1.4927 29 1 7.9266 -1.5109 -2.0545 30 1 7.7303 -1.2412 -0.3092 31 1 10.2408 -3.8041 -0.2258 32 1 10.0488 -2.0886 -0.6999 33 1 7.3131 -2.4619 1.8566 34 1 8.2182 -3.9085 2.3822 35 1 5.5984 -4.3713 1.1642 36 1 5.7137 -4.6337 -0.5875 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595826744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:00 Heat of formation + Delta-G solvation = -71.915049 kcal Electronic energy + Delta-G solvation = -16157.248052 eV Core-core repulsion = 13639.871854 eV Total energy + Delta-G solvation = -2517.376199 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.41436 -38.46220 -35.48204 -34.07555 -32.76516 -31.55591 -29.11013 -26.90475 -24.87639 -23.97292 -22.70622 -21.75285 -20.04863 -19.05343 -17.40240 -16.78537 -16.61797 -16.21824 -16.09389 -15.82725 -14.98790 -14.73772 -14.64201 -14.12009 -13.89136 -13.67136 -13.24159 -13.10559 -12.88227 -12.70655 -12.10630 -11.90316 -11.86028 -11.77475 -11.62275 -11.45477 -11.18547 -11.06060 -10.75116 -10.37352 -9.22727 -8.31387 -6.35294 1.33937 1.36982 1.50012 2.35035 2.92514 3.04312 3.07765 3.41530 3.70448 3.92804 4.13557 4.17124 4.33541 4.38638 4.46654 4.49374 4.53590 4.61506 4.75602 4.83272 4.85148 4.87455 4.93194 4.97655 5.05955 5.13398 5.18783 5.29263 5.40379 5.49083 5.62665 6.08243 6.13563 6.23829 6.30524 6.72439 7.29666 8.85289 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.043965 B = 0.006489 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.710807 B = 4314.247893 C = 4531.511753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.251 1.251 7 C -0.533 4.533 8 H 0.034 0.966 9 C 0.001 3.999 10 C 0.083 3.917 11 N -0.543 5.543 12 C 0.046 3.954 13 C -0.105 4.105 14 C -0.113 4.113 15 H 0.117 0.883 16 C 0.052 3.948 17 O -0.410 6.410 18 C 0.060 3.940 19 C -0.108 4.108 20 H 0.102 0.898 21 C 0.063 3.937 22 H 0.267 0.733 23 H 0.018 0.982 24 H 0.017 0.983 25 H 0.020 0.980 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.104 -7.449 -2.302 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.175 1.175 7 C -0.571 4.571 8 H 0.052 0.948 9 C -0.036 4.036 10 C -0.045 4.045 11 N -0.267 5.267 12 C -0.081 4.081 13 C -0.143 4.143 14 C -0.132 4.132 15 H 0.135 0.865 16 C -0.024 4.024 17 O -0.330 6.330 18 C -0.016 4.016 19 C -0.127 4.127 20 H 0.121 0.879 21 C -0.065 4.065 22 H 0.076 0.924 23 H 0.036 0.964 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 20.246 -6.910 -1.764 21.465 hybrid contribution -0.982 0.114 -0.657 1.187 sum 19.263 -6.797 -2.421 20.570 Atomic orbital electron populations 1.70057 1.08204 1.28195 1.52581 1.25935 0.95553 1.03325 0.94029 0.85679 0.79441 0.78443 0.79233 1.19034 1.20804 1.17485 1.21418 0.91908 0.93227 1.50557 0.94809 1.19420 0.93314 0.94438 0.96473 1.21802 0.85786 0.97561 0.99328 1.62411 1.07510 1.22820 1.33999 1.22194 0.96153 0.99869 0.89917 1.21521 0.93169 0.97211 1.02391 1.22895 0.94838 0.96821 0.98630 0.86467 1.23801 0.95990 1.01261 0.81372 1.88490 1.41205 1.73278 1.30025 1.22997 0.85404 0.96349 0.96847 1.21921 0.94592 1.01154 0.95007 0.87940 1.21501 0.94424 0.89168 1.01377 0.92417 0.96371 0.96507 0.96161 0.91957 0.94355 0.91857 0.89720 0.92439 0.90615 0.89029 0.92153 0.90658 0.90558 0.94243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 2 C 0.01 0.51 5.47 84.65 0.46 0.98 16 3 Si 0.95 45.40 27.47 68.60 1.88 47.29 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.25 -11.48 6.54 99.48 0.65 -10.83 16 7 C -0.53 -31.27 9.66 25.60 0.25 -31.02 16 8 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 9 C 0.00 0.06 4.02 29.85 0.12 0.18 16 10 C 0.08 3.33 4.88 86.30 0.42 3.75 16 11 N -0.54 -17.81 4.33 -900.80 -3.90 -21.71 16 12 C 0.05 1.37 5.33 86.14 0.46 1.83 16 13 C -0.11 -2.47 5.03 30.50 0.15 -2.31 16 14 C -0.11 -2.13 3.82 -9.39 -0.04 -2.17 16 15 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 16 C 0.05 0.95 7.00 72.94 0.51 1.46 16 17 O -0.41 -10.53 11.01 -148.98 -1.64 -12.17 16 18 C 0.06 1.45 6.89 72.14 0.50 1.95 16 19 C -0.11 -2.23 2.85 -10.87 -0.03 -2.26 16 20 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 21 C 0.06 1.61 4.76 85.70 0.41 2.02 16 22 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 23 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 24 H 0.02 0.79 5.87 -2.39 -0.01 0.78 16 25 H 0.02 0.83 8.11 -2.39 -0.02 0.81 16 26 H 0.06 2.53 7.99 -2.39 -0.02 2.51 16 27 H 0.04 1.07 8.08 -2.39 -0.02 1.05 16 28 H 0.06 2.12 6.22 -2.39 -0.01 2.11 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.60 7.26 -2.39 -0.02 1.58 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.51 7.98 -2.39 -0.02 1.49 16 33 H 0.06 1.77 7.63 -2.39 -0.02 1.75 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.92 8.02 -2.39 -0.02 1.90 16 36 H 0.04 0.96 8.10 -2.39 -0.02 0.94 16 Total: -1.00 -67.20 276.69 0.83 -66.37 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 0.98 Total: 5.73 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 3.21 Total: -25.59 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -3.60 Total: -81.63 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -1.64 Total: -12.17 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.29 kcal Total: -67.20 0.83 -66.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595826744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.547 kcal (2) G-P(sol) polarization free energy of solvation -67.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds